| Clone Name | FLbaf53o01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC096732.3| Homo sapiens BAC clone RP11-93L9 from 4, complete sequence Length = 184810 Score = 48.1 bits (24), Expect = 0.064 Identities = 24/24 (100%) Strand = Plus / Plus Query: 999 atatttaatgaaattttatttata 1022 |||||||||||||||||||||||| Sbjct: 72657 atatttaatgaaattttatttata 72680
>emb|AL833449.1|HSM804762 Homo sapiens mRNA; cDNA DKFZp686P12109 (from clone DKFZp686P12109) Length = 6527 Score = 48.1 bits (24), Expect = 0.064 Identities = 24/24 (100%) Strand = Plus / Plus Query: 999 atatttaatgaaattttatttata 1022 |||||||||||||||||||||||| Sbjct: 3897 atatttaatgaaattttatttata 3920
>ref|NM_001051495.1| Oryza sativa (japonica cultivar-group) Os01g0874900 (Os01g0874900) mRNA, complete cds Length = 2347 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 ctcctgctcgtgttcctcctcgtcgc 235 ||||||||||| |||||||||||||| Sbjct: 623 ctcctgctcgtcttcctcctcgtcgc 648
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 ctcctgctcgtgttcctcctcgtcgc 235 ||||||||||| |||||||||||||| Sbjct: 37956445 ctcctgctcgtcttcctcctcgtcgc 37956470
>emb|AL390877.9| Human DNA sequence from clone RP11-134N8 on chromosome 1 Contains a proline-rich nuclear receptor coactivator 2 (PNRC2) pseudogene, complete sequence Length = 149598 Score = 44.1 bits (22), Expect = 1.00 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgca 467 |||||||||||||||||||||| Sbjct: 69832 ttgtgaaaatgcccatactgca 69853
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 ctcctgctcgtgttcctcctcgtcgc 235 ||||||||||| |||||||||||||| Sbjct: 37389 ctcctgctcgtcttcctcctcgtcgc 37414
>gb|AC111001.4| Homo sapiens BAC clone RP13-933J18 from 4, complete sequence Length = 119175 Score = 44.1 bits (22), Expect = 1.00 Identities = 22/22 (100%) Strand = Plus / Plus Query: 650 ttttgcagaaagacccctgcca 671 |||||||||||||||||||||| Sbjct: 39263 ttttgcagaaagacccctgcca 39284
>gb|AC112232.5| Homo sapiens BAC clone RP11-166K6 from 4, complete sequence Length = 171050 Score = 44.1 bits (22), Expect = 1.00 Identities = 22/22 (100%) Strand = Plus / Plus Query: 650 ttttgcagaaagacccctgcca 671 |||||||||||||||||||||| Sbjct: 34806 ttttgcagaaagacccctgcca 34827
>dbj|AK103554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132G05, full insert sequence Length = 2348 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 ctcctgctcgtgttcctcctcgtcgc 235 ||||||||||| |||||||||||||| Sbjct: 624 ctcctgctcgtcttcctcctcgtcgc 649
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 ctcctgctcgtgttcctcctcgtcgc 235 ||||||||||| |||||||||||||| Sbjct: 52721 ctcctgctcgtcttcctcctcgtcgc 52746
>emb|CR956630.8| Zebrafish DNA sequence from clone CH73-141B18 in linkage group 6, complete sequence Length = 119622 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 864 tttttgcagaaagacccttgc 884 ||||||||||||||||||||| Sbjct: 112579 tttttgcagaaagacccttgc 112559
>gb|AC187716.2| Callithrix jacchus BAC clone CH259-71H12 from chromosome unknown, complete sequence Length = 165346 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 70803 ttgtgaaaatgcccatactgc 70783
>emb|CT573356.15| Zebrafish DNA sequence from clone CH211-276F18 in linkage group 24, complete sequence Length = 156417 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 998 aatatttaatgaaattttatt 1018 ||||||||||||||||||||| Sbjct: 149497 aatatttaatgaaattttatt 149477
>ref|XM_629756.1| Dictyostelium discoideum AX4 hypothetical protein (racGAP) mRNA, complete cds Length = 4053 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1000 tatttaatgaaattttattta 1020 ||||||||||||||||||||| Sbjct: 457 tatttaatgaaattttattta 437
>gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0628H02, complete sequence Length = 65115 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 47484 tatcacacttggccacgtcaaaact 47508
>gb|AC137746.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0030J05, complete sequence Length = 147352 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 12794 tatcacacttggccacgtcaaaact 12818
>gb|AC079416.4| Homo sapiens chromosome 16 clone RP11-454F8, complete sequence Length = 205498 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 90247 ttgtgaaaatgcccatactgc 90227
>gb|AC103768.2| Homo sapiens chromosome 18, clone RP11-108G18, complete sequence Length = 180473 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 61538 ttgtgaaaatgcccatactgc 61518
>gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, complete sequence Length = 215308 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 123844 ttgtgaaaatgcccatactgc 123864
>gb|AC096742.3| Homo sapiens BAC clone RP11-328K4 from 4, complete sequence Length = 113991 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 17415 ttgtgaaaatgcccatactgc 17435
>gb|AC103774.2| Homo sapiens chromosome 18, clone RP11-177E16, complete sequence Length = 175384 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 61148 ttgtgaaaatgcccatactgc 61128
>gb|AC105201.3| Homo sapiens chromosome 18, clone RP11-244M2, complete sequence Length = 151032 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 999 atatttaatgaaattttattt 1019 ||||||||||||||||||||| Sbjct: 42945 atatttaatgaaattttattt 42925
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 5524019 tatcacacttggccacgtcaaaact 5523995
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 12513946 tatcacacttggccacgtcaaaact 12513970
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 33920927 tatcacacttggccacgtcaaaact 33920903
>gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, complete sequence Length = 177470 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 54473 ttgtgaaaatgcccatactgc 54453
>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 187738 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 163978 ttgtgaaaatgcccatactgc 163998
>emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chromosome 9, complete sequence Length = 117273 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 75648 ttgtgaaaatgcccatactgc 75628
>emb|AL356157.14| Human DNA sequence from clone RP11-733D4 on chromosome 10 Contains part of a novel gene, complete sequence Length = 198917 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 160156 ttgtgaaaatgcccatactgc 160176
>emb|AL136380.22| Human DNA sequence from clone RP5-882O7 on chromosome 1p33-34.2 Contains the 5' end of the PTCH2 gene for patched homolog 2 (Drosophila), a ribosomal protein S2 (RPS2) pseudogene, the EIF2B3 gene for eukaryotic translation initiation factor 2B subunit 3 gamma 58kDa, a chromosome 14 open reading frame 18 (C14orf18) pseudogene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a mitochondrial ribosomal protein S17 (MRPS17) pseudogene and four CpG islands, complete sequence Length = 171656 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 129819 ttgtgaaaatgcccatactgc 129799
>emb|AL133472.12| Human DNA sequence from clone RP1-177C7 on chromosome 6 Contains the 5' end of the gene for a novel protein (FLJ30976) and the 5' end of the KIAA0274 gene (similar to the novel protein CG17840). Contains a CpG island, complete sequence Length = 87434 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 54120 ttgtgaaaatgcccatactgc 54100
>emb|AL133480.9| Human DNA sequence from clone RP11-307L3 on chromosome 9p23-24.3 Contains a selenoprotein T (LOC51714) pseudogene, the gene for a novel protein kinase (NYD-SP25), the 5' end of the gene for ubiquitin-like, containing PHD and RING finger domains 2 (URF2), a novel gene and a CpG island, complete sequence Length = 189672 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 179809 ttgtgaaaatgcccatactgc 179789
>gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, complete sequence Length = 171603 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 19855 ttgtgaaaatgcccatactgc 19835
>gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, complete sequence Length = 186428 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 aggcgcccgccacagctcccg 39 ||||||||||||||||||||| Sbjct: 145306 aggcgcccgccacagctcccg 145286
>gb|AC092795.2| Homo sapiens chromosome 3 clone RP11-9J18, complete sequence Length = 142517 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 42663 ttgtgaaaatgcccatactgc 42683
>gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, complete sequence Length = 125406 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 53044 ttgtgaaaatgcccatactgc 53024
>emb|Y10159.1|DDY10159 D.discoideum racGAP gene Length = 4535 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1000 tatttaatgaaattttattta 1020 ||||||||||||||||||||| Sbjct: 779 tatttaatgaaattttattta 759
>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence Length = 152529 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 4703 ttgtgaaaatgcccatactgc 4723
>gb|AC093911.2| Homo sapiens BAC clone RP11-765B12 from 2, complete sequence Length = 186199 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 21173 ttgtgaaaatgcccatactgc 21193
>gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, complete sequence Length = 181706 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1000 tatttaatgaaattttattta 1020 ||||||||||||||||||||| Sbjct: 154619 tatttaatgaaattttattta 154599
>gb|AC012450.9| Homo sapiens BAC clone RP11-351J7 from 2, complete sequence Length = 183695 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 70210 ttgtgaaaatgcccatactgc 70230
>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence Length = 202361 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 186565 ttgtgaaaatgcccatactgc 186585
>gb|AC007345.5|AC007345 Homo sapiens chromosome 16 clone RP11-466N18, complete sequence Length = 188863 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 17985 ttgtgaaaatgcccatactgc 18005
>gb|AC139712.1| Homo sapiens BAC clone RP11-754G3 from 2, complete sequence Length = 180898 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 84219 ttgtgaaaatgcccatactgc 84199
>dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1031_C12 Length = 157574 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 129858 tatcacacttggccacgtcaaaact 129834
>gb|AC007649.12| Homo sapiens 12 BAC RPCI11-90N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168623 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 10898 ttgtgaaaatgcccatactgc 10918
>dbj|AP005878.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0012I09 Length = 127774 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 2549 tatcacacttggccacgtcaaaact 2525
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 tatcacacttggacacgtcaaaact 575 |||||||||||| |||||||||||| Sbjct: 79890 tatcacacttggccacgtcaaaact 79866
>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence Length = 152747 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1000 tatttaatgaaattttattta 1020 ||||||||||||||||||||| Sbjct: 21446 tatttaatgaaattttattta 21426
>gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K14, complete sequence Length = 162868 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 11924 ttgtgaaaatgcccatactgc 11904
>emb|BX649631.8| Zebrafish DNA sequence from clone CH211-186M12 in linkage group 22, complete sequence Length = 168355 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 864 tttttgcagaaagacccttgc 884 ||||||||||||||||||||| Sbjct: 128188 tttttgcagaaagacccttgc 128208
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence Length = 141894 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 19103 ttgtgaaaatgcccatactgc 19123
>gb|AC004053.1|AC004053 Homo sapiens chromosome 4 clone B211A1 map 4q25, complete sequence Length = 166900 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 100259 ttgtgaaaatgcccatactgc 100279
>ref|XM_731503.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300888.00.0) partial mRNA Length = 870 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 996 ccaatatttaatgaaatttta 1016 ||||||||||||||||||||| Sbjct: 538 ccaatatttaatgaaatttta 558
>ref|XM_740788.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000347.02.0) partial mRNA Length = 1608 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 996 ccaatatttaatgaaatttta 1016 ||||||||||||||||||||| Sbjct: 1264 ccaatatttaatgaaatttta 1284
>dbj|AP001955.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2002L2, complete sequence Length = 88753 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 ttgtgaaaatgcccatactgc 466 ||||||||||||||||||||| Sbjct: 22621 ttgtgaaaatgcccatactgc 22601 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,372,082 Number of extensions: 9313808 Number of successful extensions: 201314 Number of sequences better than 10.0: 56 Number of HSP's gapped: 201314 Number of HSP's successfully gapped: 56 Length of query: 1042 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1019 Effective length of database: 18,503,978,556 Effective search space: 18855554148564 Effective search space used: 18855554148564 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)