ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf53o01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC096732.3| Homo sapiens BAC clone RP11-93L9 from 4, complete... 48 0.064
2emb|AL833449.1|HSM804762 Homo sapiens mRNA; cDNA DKFZp686P12109 ... 48 0.064
3ref|NM_001051495.1| Oryza sativa (japonica cultivar-group) Os01g... 44 1.00
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.00
5emb|AL390877.9| Human DNA sequence from clone RP11-134N8 on chro... 44 1.00
6dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 44 1.00
7gb|AC111001.4| Homo sapiens BAC clone RP13-933J18 from 4, comple... 44 1.00
8gb|AC112232.5| Homo sapiens BAC clone RP11-166K6 from 4, complet... 44 1.00
9dbj|AK103554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 1.00
10dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 44 1.00
11emb|CR956630.8| Zebrafish DNA sequence from clone CH73-141B18 in... 42 3.9
12gb|AC187716.2| Callithrix jacchus BAC clone CH259-71H12 from chr... 42 3.9
13emb|CT573356.15| Zebrafish DNA sequence from clone CH211-276F18 ... 42 3.9
14ref|XM_629756.1| Dictyostelium discoideum AX4 hypothetical prote... 42 3.9
15gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome... 42 3.9
16gb|AC137746.2| Oryza sativa (japonica cultivar-group) chromosome... 42 3.9
17gb|AC079416.4| Homo sapiens chromosome 16 clone RP11-454F8, comp... 42 3.9
18gb|AC103768.2| Homo sapiens chromosome 18, clone RP11-108G18, co... 42 3.9
19gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, compl... 42 3.9
20gb|AC096742.3| Homo sapiens BAC clone RP11-328K4 from 4, complet... 42 3.9
21gb|AC103774.2| Homo sapiens chromosome 18, clone RP11-177E16, co... 42 3.9
22gb|AC105201.3| Homo sapiens chromosome 18, clone RP11-244M2, com... 42 3.9
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
26gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, compl... 42 3.9
27emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on ch... 42 3.9
28emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chro... 42 3.9
29emb|AL356157.14| Human DNA sequence from clone RP11-733D4 on chr... 42 3.9
30emb|AL136380.22| Human DNA sequence from clone RP5-882O7 on chro... 42 3.9
31emb|AL133472.12| Human DNA sequence from clone RP1-177C7 on chro... 42 3.9
32emb|AL133480.9| Human DNA sequence from clone RP11-307L3 on chro... 42 3.9
33gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, comp... 42 3.9
34gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, com... 42 3.9
35gb|AC092795.2| Homo sapiens chromosome 3 clone RP11-9J18, comple... 42 3.9
36gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, compl... 42 3.9
37emb|Y10159.1|DDY10159 D.discoideum racGAP gene 42 3.9
38gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, comp... 42 3.9
39gb|AC093911.2| Homo sapiens BAC clone RP11-765B12 from 2, comple... 42 3.9
40gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, compl... 42 3.9
41gb|AC012450.9| Homo sapiens BAC clone RP11-351J7 from 2, complet... 42 3.9
42gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 42 3.9
43gb|AC007345.5|AC007345 Homo sapiens chromosome 16 clone RP11-466... 42 3.9
44gb|AC139712.1| Homo sapiens BAC clone RP11-754G3 from 2, complet... 42 3.9
45dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
46gb|AC007649.12| Homo sapiens 12 BAC RPCI11-90N16 (Roswell Park C... 42 3.9
47dbj|AP005878.2| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
48dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
49gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete... 42 3.9
50gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K... 42 3.9
51emb|BX649631.8| Zebrafish DNA sequence from clone CH211-186M12 i... 42 3.9
52gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O... 42 3.9
53gb|AC004053.1|AC004053 Homo sapiens chromosome 4 clone B211A1 ma... 42 3.9
54ref|XM_731503.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 3.9
55ref|XM_740788.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 3.9
56dbj|AP001955.2| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 42 3.9

>gb|AC096732.3| Homo sapiens BAC clone RP11-93L9 from 4, complete sequence
          Length = 184810
 Score = 48.1 bits (24), Expect = 0.064
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 999   atatttaatgaaattttatttata 1022
             ||||||||||||||||||||||||
Sbjct: 72657 atatttaatgaaattttatttata 72680



to top

>emb|AL833449.1|HSM804762 Homo sapiens mRNA; cDNA DKFZp686P12109 (from clone DKFZp686P12109)
          Length = 6527

 Score = 48.1 bits (24), Expect = 0.064
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 999  atatttaatgaaattttatttata 1022
            ||||||||||||||||||||||||
Sbjct: 3897 atatttaatgaaattttatttata 3920



to top

>ref|NM_001051495.1| Oryza sativa (japonica cultivar-group) Os01g0874900 (Os01g0874900)
           mRNA, complete cds
          Length = 2347

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 210 ctcctgctcgtgttcctcctcgtcgc 235
           ||||||||||| ||||||||||||||
Sbjct: 623 ctcctgctcgtcttcctcctcgtcgc 648



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 210      ctcctgctcgtgttcctcctcgtcgc 235
                ||||||||||| ||||||||||||||
Sbjct: 37956445 ctcctgctcgtcttcctcctcgtcgc 37956470



to top

>emb|AL390877.9| Human DNA sequence from clone RP11-134N8 on chromosome 1 Contains a
             proline-rich nuclear receptor coactivator 2 (PNRC2)
             pseudogene, complete sequence
          Length = 149598

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   ttgtgaaaatgcccatactgca 467
             ||||||||||||||||||||||
Sbjct: 69832 ttgtgaaaatgcccatactgca 69853



to top

>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 210   ctcctgctcgtgttcctcctcgtcgc 235
             ||||||||||| ||||||||||||||
Sbjct: 37389 ctcctgctcgtcttcctcctcgtcgc 37414



to top

>gb|AC111001.4| Homo sapiens BAC clone RP13-933J18 from 4, complete sequence
          Length = 119175

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 650   ttttgcagaaagacccctgcca 671
             ||||||||||||||||||||||
Sbjct: 39263 ttttgcagaaagacccctgcca 39284



to top

>gb|AC112232.5| Homo sapiens BAC clone RP11-166K6 from 4, complete sequence
          Length = 171050

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 650   ttttgcagaaagacccctgcca 671
             ||||||||||||||||||||||
Sbjct: 34806 ttttgcagaaagacccctgcca 34827



to top

>dbj|AK103554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132G05, full
           insert sequence
          Length = 2348

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 210 ctcctgctcgtgttcctcctcgtcgc 235
           ||||||||||| ||||||||||||||
Sbjct: 624 ctcctgctcgtcttcctcctcgtcgc 649



to top

>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 210   ctcctgctcgtgttcctcctcgtcgc 235
             ||||||||||| ||||||||||||||
Sbjct: 52721 ctcctgctcgtcttcctcctcgtcgc 52746



to top

>emb|CR956630.8| Zebrafish DNA sequence from clone CH73-141B18 in linkage group 6,
              complete sequence
          Length = 119622

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 864    tttttgcagaaagacccttgc 884
              |||||||||||||||||||||
Sbjct: 112579 tttttgcagaaagacccttgc 112559



to top

>gb|AC187716.2| Callithrix jacchus BAC clone CH259-71H12 from chromosome unknown,
             complete sequence
          Length = 165346

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 70803 ttgtgaaaatgcccatactgc 70783



to top

>emb|CT573356.15| Zebrafish DNA sequence from clone CH211-276F18 in linkage group 24,
              complete sequence
          Length = 156417

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 998    aatatttaatgaaattttatt 1018
              |||||||||||||||||||||
Sbjct: 149497 aatatttaatgaaattttatt 149477



to top

>ref|XM_629756.1| Dictyostelium discoideum AX4 hypothetical protein (racGAP) mRNA,
            complete cds
          Length = 4053

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1000 tatttaatgaaattttattta 1020
            |||||||||||||||||||||
Sbjct: 457  tatttaatgaaattttattta 437



to top

>gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0628H02,
             complete sequence
          Length = 65115

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 551   tatcacacttggacacgtcaaaact 575
             |||||||||||| ||||||||||||
Sbjct: 47484 tatcacacttggccacgtcaaaact 47508



to top

>gb|AC137746.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OSJNBa0030J05, complete sequence
          Length = 147352

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 551   tatcacacttggacacgtcaaaact 575
             |||||||||||| ||||||||||||
Sbjct: 12794 tatcacacttggccacgtcaaaact 12818



to top

>gb|AC079416.4| Homo sapiens chromosome 16 clone RP11-454F8, complete sequence
          Length = 205498

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 90247 ttgtgaaaatgcccatactgc 90227



to top

>gb|AC103768.2| Homo sapiens chromosome 18, clone RP11-108G18, complete sequence
          Length = 180473

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 61538 ttgtgaaaatgcccatactgc 61518



to top

>gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, complete sequence
          Length = 215308

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 123844 ttgtgaaaatgcccatactgc 123864



to top

>gb|AC096742.3| Homo sapiens BAC clone RP11-328K4 from 4, complete sequence
          Length = 113991

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 17415 ttgtgaaaatgcccatactgc 17435



to top

>gb|AC103774.2| Homo sapiens chromosome 18, clone RP11-177E16, complete sequence
          Length = 175384

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 61148 ttgtgaaaatgcccatactgc 61128



to top

>gb|AC105201.3| Homo sapiens chromosome 18, clone RP11-244M2, complete sequence
          Length = 151032

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 999   atatttaatgaaattttattt 1019
             |||||||||||||||||||||
Sbjct: 42945 atatttaatgaaattttattt 42925



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 551     tatcacacttggacacgtcaaaact 575
               |||||||||||| ||||||||||||
Sbjct: 5524019 tatcacacttggccacgtcaaaact 5523995



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 551      tatcacacttggacacgtcaaaact 575
                |||||||||||| ||||||||||||
Sbjct: 12513946 tatcacacttggccacgtcaaaact 12513970



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 551      tatcacacttggacacgtcaaaact 575
                |||||||||||| ||||||||||||
Sbjct: 33920927 tatcacacttggccacgtcaaaact 33920903



to top

>gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, complete sequence
          Length = 177470

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 54473 ttgtgaaaatgcccatactgc 54453



to top

>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5'
              end of a novel gene and the 3' end of a novel gene,
              complete sequence
          Length = 187738

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 163978 ttgtgaaaatgcccatactgc 163998



to top

>emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chromosome 9, complete
             sequence
          Length = 117273

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 75648 ttgtgaaaatgcccatactgc 75628



to top

>emb|AL356157.14| Human DNA sequence from clone RP11-733D4 on chromosome 10 Contains part
              of a novel gene, complete sequence
          Length = 198917

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 160156 ttgtgaaaatgcccatactgc 160176



to top

>emb|AL136380.22| Human DNA sequence from clone RP5-882O7 on chromosome 1p33-34.2 Contains
              the 5' end of the PTCH2 gene for patched homolog 2
              (Drosophila), a ribosomal protein S2 (RPS2) pseudogene, the
              EIF2B3 gene for eukaryotic translation initiation factor 2B
              subunit 3 gamma 58kDa, a chromosome 14 open reading frame
              18 (C14orf18) pseudogene, a peptidylprolyl isomerase A
              (cyclophilin A) (PPIA) pseudogene, a mitochondrial
              ribosomal protein S17 (MRPS17) pseudogene and four CpG
              islands, complete sequence
          Length = 171656

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 129819 ttgtgaaaatgcccatactgc 129799



to top

>emb|AL133472.12| Human DNA sequence from clone RP1-177C7 on chromosome 6 Contains the 5'
             end of the gene for a novel protein (FLJ30976) and the 5'
             end of the KIAA0274 gene (similar to the novel protein
             CG17840). Contains a CpG island, complete sequence
          Length = 87434

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 54120 ttgtgaaaatgcccatactgc 54100



to top

>emb|AL133480.9| Human DNA sequence from clone RP11-307L3 on chromosome 9p23-24.3 Contains
              a selenoprotein T (LOC51714) pseudogene, the gene for a
              novel protein kinase (NYD-SP25), the 5' end of the gene for
              ubiquitin-like, containing PHD and RING finger domains 2
              (URF2), a novel gene and a CpG island, complete sequence
          Length = 189672

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 179809 ttgtgaaaatgcccatactgc 179789



to top

>gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, complete sequence
          Length = 171603

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 19855 ttgtgaaaatgcccatactgc 19835



to top

>gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, complete sequence
          Length = 186428

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     aggcgcccgccacagctcccg 39
              |||||||||||||||||||||
Sbjct: 145306 aggcgcccgccacagctcccg 145286



to top

>gb|AC092795.2| Homo sapiens chromosome 3 clone RP11-9J18, complete sequence
          Length = 142517

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 42663 ttgtgaaaatgcccatactgc 42683



to top

>gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, complete sequence
          Length = 125406

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 53044 ttgtgaaaatgcccatactgc 53024



to top

>emb|Y10159.1|DDY10159 D.discoideum racGAP gene
          Length = 4535

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1000 tatttaatgaaattttattta 1020
            |||||||||||||||||||||
Sbjct: 779  tatttaatgaaattttattta 759



to top

>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence
          Length = 152529

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  ttgtgaaaatgcccatactgc 466
            |||||||||||||||||||||
Sbjct: 4703 ttgtgaaaatgcccatactgc 4723



to top

>gb|AC093911.2| Homo sapiens BAC clone RP11-765B12 from 2, complete sequence
          Length = 186199

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 21173 ttgtgaaaatgcccatactgc 21193



to top

>gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, complete sequence
          Length = 181706

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1000   tatttaatgaaattttattta 1020
              |||||||||||||||||||||
Sbjct: 154619 tatttaatgaaattttattta 154599



to top

>gb|AC012450.9| Homo sapiens BAC clone RP11-351J7 from 2, complete sequence
          Length = 183695

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 70210 ttgtgaaaatgcccatactgc 70230



to top

>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 186565 ttgtgaaaatgcccatactgc 186585



to top

>gb|AC007345.5|AC007345 Homo sapiens chromosome 16 clone RP11-466N18, complete sequence
          Length = 188863

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 17985 ttgtgaaaatgcccatactgc 18005



to top

>gb|AC139712.1| Homo sapiens BAC clone RP11-754G3 from 2, complete sequence
          Length = 180898

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 84219 ttgtgaaaatgcccatactgc 84199



to top

>dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1031_C12
          Length = 157574

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 551    tatcacacttggacacgtcaaaact 575
              |||||||||||| ||||||||||||
Sbjct: 129858 tatcacacttggccacgtcaaaact 129834



to top

>gb|AC007649.12| Homo sapiens 12 BAC RPCI11-90N16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168623

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 10898 ttgtgaaaatgcccatactgc 10918



to top

>dbj|AP005878.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBb0012I09
          Length = 127774

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 551  tatcacacttggacacgtcaaaact 575
            |||||||||||| ||||||||||||
Sbjct: 2549 tatcacacttggccacgtcaaaact 2525



to top

>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_E04
          Length = 133621

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 551   tatcacacttggacacgtcaaaact 575
             |||||||||||| ||||||||||||
Sbjct: 79890 tatcacacttggccacgtcaaaact 79866



to top

>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence
          Length = 152747

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1000  tatttaatgaaattttattta 1020
             |||||||||||||||||||||
Sbjct: 21446 tatttaatgaaattttattta 21426



to top

>gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K14, complete sequence
          Length = 162868

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 11924 ttgtgaaaatgcccatactgc 11904



to top

>emb|BX649631.8| Zebrafish DNA sequence from clone CH211-186M12 in linkage group 22,
              complete sequence
          Length = 168355

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 864    tttttgcagaaagacccttgc 884
              |||||||||||||||||||||
Sbjct: 128188 tttttgcagaaagacccttgc 128208



to top

>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence
          Length = 141894

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 19103 ttgtgaaaatgcccatactgc 19123



to top

>gb|AC004053.1|AC004053 Homo sapiens chromosome 4 clone B211A1 map 4q25, complete sequence
          Length = 166900

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    ttgtgaaaatgcccatactgc 466
              |||||||||||||||||||||
Sbjct: 100259 ttgtgaaaatgcccatactgc 100279



to top

>ref|XM_731503.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300888.00.0)
            partial mRNA
          Length = 870

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 996  ccaatatttaatgaaatttta 1016
            |||||||||||||||||||||
Sbjct: 538  ccaatatttaatgaaatttta 558



to top

>ref|XM_740788.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000347.02.0)
            partial mRNA
          Length = 1608

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 996  ccaatatttaatgaaatttta 1016
            |||||||||||||||||||||
Sbjct: 1264 ccaatatttaatgaaatttta 1284



to top

>dbj|AP001955.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2002L2, complete
             sequence
          Length = 88753

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ttgtgaaaatgcccatactgc 466
             |||||||||||||||||||||
Sbjct: 22621 ttgtgaaaatgcccatactgc 22601


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 181,372,082
Number of extensions: 9313808
Number of successful extensions: 201314
Number of sequences better than 10.0: 56
Number of HSP's gapped: 201314
Number of HSP's successfully gapped: 56
Length of query: 1042
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1019
Effective length of database: 18,503,978,556
Effective search space: 18855554148564
Effective search space used: 18855554148564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top