ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf48k24 |
|---|---|
| Clone Library Name | barley_pub |
>Q80YR5:SAFB2_MOUSE Scaffold attachment factor B2 - Mus musculus (Mouse)| Length = 991 Score = 37.7 bits (86), Expect = 0.12 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +3 Query: 255 REEELDRQPGGRRMVRERDGVHVPQGQPP--RLLEPHGEAAGVPWH 386 +E +DR+ G R V ERDG + P Q RLLE H +G WH Sbjct: 819 QEHVIDRRDGSRTRVEERDGQYYPDDQHSHGRLLEHHAWDSGDGWH 864
>P64850:Y1454_MYCBO Uncharacterized protein Mb1454 - Mycobacterium bovis| Length = 157 Score = 36.2 bits (82), Expect = 0.35 Identities = 23/70 (32%), Positives = 30/70 (42%) Frame = +1 Query: 334 SRLGSSNLMERQLEFRGILSSNPAENPDFYSWNRVMVRYCDGASFTGEGYNAGSKVYFRG 513 SRLG L + L NP DF WN R + +F GE N G+ ++ R Sbjct: 41 SRLGDVCLDAPSGSWFSPLVINPCNGTDFQRWNLTDDRQVESVAFPGECVNIGNALWARL 100 Query: 514 QRIWNAVMQH 543 Q N + QH Sbjct: 101 QPCVNWISQH 110
>P64849:Y1419_MYCTU Uncharacterized protein Rv1419/MT1462 - Mycobacterium tuberculosis| Length = 157 Score = 36.2 bits (82), Expect = 0.35 Identities = 23/70 (32%), Positives = 30/70 (42%) Frame = +1 Query: 334 SRLGSSNLMERQLEFRGILSSNPAENPDFYSWNRVMVRYCDGASFTGEGYNAGSKVYFRG 513 SRLG L + L NP DF WN R + +F GE N G+ ++ R Sbjct: 41 SRLGDVCLDAPSGSWFSPLVINPCNGTDFQRWNLTDDRQVESVAFPGECVNIGNALWARL 100 Query: 514 QRIWNAVMQH 543 Q N + QH Sbjct: 101 QPCVNWISQH 110
>P09021:HXA5_MOUSE Homeobox protein Hox-A5 - Mus musculus (Mouse)| Length = 270 Score = 34.3 bits (77), Expect = 1.3 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 7/80 (8%) Frame = -2 Query: 326 RYMHAITLSHHPPPSRLTIQLFFPAPDPGSMW*AGGVPSMHTAPLATADV-------RMV 168 RY T +H PPP L AP PGS GG S+ + A+A+ R Sbjct: 85 RYSQPATSTHSPPPDPLPCSAV--APSPGSDSHHGGKNSLGNSSGASANAGSTHISSREG 142 Query: 167 IGTAGTLGADAPRTKTTRGS 108 +GTA DAP + G+ Sbjct: 143 VGTASAAEEDAPASSEQAGA 162
>A2D5Y4:HXA5_LEMCA Homeobox protein Hox-A5 - Lemur catta (Ring-tailed lemur)| Length = 270 Score = 34.3 bits (77), Expect = 1.3 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = -2 Query: 326 RYMHAITLSHHPPPSRLTIQLFFPAPDPGSMW*AGGVPSMHTAPLATADV-------RMV 168 RY T +H PPP L AP PGS GG S+ + A+A+ R Sbjct: 85 RYSQPATSTHSPPPDPLPCSAV--APSPGSDSHHGGKNSLGNSSGASANAGSTHISSREG 142 Query: 167 IGTAGTLGADAPRTKTTRGSAQS 99 +GTA DAP + + SAQS Sbjct: 143 VGTASGAEEDAP-ASSEQASAQS 164
>Q2HJ67:HXA5_BOVIN Homeobox protein Hox-A5 - Bos taurus (Bovine)| Length = 270 Score = 34.3 bits (77), Expect = 1.3 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = -2 Query: 326 RYMHAITLSHHPPPSRLTIQLFFPAPDPGSMW*AGGVPSMHTAPLATADV-------RMV 168 RY T +H PPP L AP PGS GG S+ + A+A+ R Sbjct: 85 RYSQPATSTHSPPPDPLPCSAV--APSPGSDSHHGGKNSLGNSSGASANAGSTHISSREG 142 Query: 167 IGTAGTLGADAPRTKTTRGSAQS 99 +GTA DAP + + SAQS Sbjct: 143 VGTASGAEEDAP-ASSEQASAQS 164
>Q6CZ89:RRAA_ERWCT Regulator of ribonuclease activity A - Erwinia carotovora subsp.| atroseptica (Pectobacterium atrosepticum) Length = 161 Score = 33.9 bits (76), Expect = 1.7 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 640 TFFAGRSTTVKCLADAGLFLDAVDISG-GRTLRSYFGGIVATHGVAQNLPRSCT 798 T F G+ TTVKC D GL D + +G GR L GG V + L R T Sbjct: 30 TSFGGKITTVKCFEDNGLLFDLFEENGLGRVLLIDGGGSVRRALINAELARLAT 83
>P20719:HXA5_HUMAN Homeobox protein Hox-A5 - Homo sapiens (Human)| Length = 270 Score = 33.5 bits (75), Expect = 2.3 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Frame = -2 Query: 326 RYMHAITLSHHPPPSRLTIQLFFPAPDPGSMW*AGGVPSMHTAPLATADV-------RMV 168 RY T +H P P L AP PGS GG S+ + A+AD R Sbjct: 85 RYSQPATSTHSPQPDPLPCSAV--APSPGSDSHHGGKNSLSNSSGASADAGSTHISSREG 142 Query: 167 IGTAGTLGADAPRTKTTRGSAQS 99 +GTA DAP + + SAQS Sbjct: 143 VGTASGAEEDAP-ASSEQASAQS 164
>P22875:YXIS_SACER Hypothetical 28.9 kDa protein in xis 5'region - Saccharopolyspora| erythraea (Streptomyces erythraeus) Length = 263 Score = 33.1 bits (74), Expect = 2.9 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = -2 Query: 251 PDPGSMW*AGGVPSMHTAPLATADVRMVIGTAGTLGADAPRTKTTRGSA 105 PDP +W P+ + P T IGTAGT G D P + T+G+A Sbjct: 221 PDP-DLWDGTSRPTAPSRPSLTC-----IGTAGTAGTDTPPSTNTKGAA 263
>Q66G87:RRAA_YERPS Regulator of ribonuclease activity A - Yersinia pseudotuberculosis| Length = 161 Score = 33.1 bits (74), Expect = 3.0 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +1 Query: 640 TFFAGRSTTVKCLADAGLFLDAVDISG-GRTLRSYFGGIV 756 T F G+ TTVKC D GL D ++ +G GR L GG V Sbjct: 30 TSFGGKITTVKCFEDNGLLFDLLEENGLGRVLVVDGGGSV 69
>Q8ZJJ7:RRAA_YERPE Regulator of ribonuclease activity A - Yersinia pestis| Length = 161 Score = 33.1 bits (74), Expect = 3.0 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +1 Query: 640 TFFAGRSTTVKCLADAGLFLDAVDISG-GRTLRSYFGGIV 756 T F G+ TTVKC D GL D ++ +G GR L GG V Sbjct: 30 TSFGGKITTVKCFEDNGLLFDLLEENGLGRVLVVDGGGSV 69
>A2D5K9:HXA5_LAGLA Homeobox protein Hox-A5 - Lagothrix lagotricha (Common woolly| monkey) Length = 270 Score = 32.7 bits (73), Expect = 3.8 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Frame = -2 Query: 326 RYMHAITLSHHPPPSRLTIQLFFPAPDPGSMW*AGGVPSMHTAPLATADV-------RMV 168 RY T +H PPP L AP PG GG S+ + A+A+ R Sbjct: 85 RYSQPATSTHSPPPDPLPCSAV--APSPGGDSHHGGKNSLGNSSGASANAGSTHISSREG 142 Query: 167 IGTAGTLGADAPRTKTTRGSAQS 99 +GTA DAP + + SAQS Sbjct: 143 VGTASGAEEDAP-ASSEQASAQS 164
>Q14623:IHH_HUMAN Indian hedgehog protein precursor - Homo sapiens (Human)| Length = 411 Score = 32.3 bits (72), Expect = 5.0 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Frame = -2 Query: 350 EEPRRLPLRYMHAI-TLSHHPPPSRLTIQLFFPAPDPGSMW*AGGVPSMHTAPLATADVR 174 + PRRL L H + T +H P+ F PG GVP + A +A Sbjct: 264 DPPRRLALTPAHLLFTADNHTEPAARFRATFASHVQPGQYVLVAGVPGLQPARVA----- 318 Query: 173 MVIGTAGTLGADAPRTKTTRGSAQSLVILIFSPI 72 + T LGA AP TK + +V F+ + Sbjct: 319 -AVSTHVALGAYAPLTKHGTLVVEDVVASCFAAV 351
>O43541:SMAD6_HUMAN Mothers against decapentaplegic homolog 6 - Homo sapiens (Human)| Length = 496 Score = 31.6 bits (70), Expect = 8.6 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Frame = +1 Query: 214 GTPPAYHMDPGSGAGKKSWIVNLEGG-GW-----CESVMACMYRKGSRLGS 348 G PP +PG+GAG V GG GW CE+V C++ + G+ Sbjct: 87 GGPPRPMSEPGAGAGSSLLDVAEPGGPGWLPESDCETVTCCLFSERDAAGA 137 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 247,966,465 Number of extensions: 5670097 Number of successful extensions: 16183 Number of sequences better than 10.0: 14 Number of HSP's gapped: 16166 Number of HSP's successfully gapped: 14 Length of query: 477 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 360 Effective length of database: 68,593,924 Effective search space: 24693812640 Effective search space used: 24693812640 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
