ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf48k24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049421.1| Oryza sativa (japonica cultivar-group) Os01g0319000 (Os01g0319000) mRNA, complete cds Length = 2171 Score = 115 bits (58), Expect = 5e-22 Identities = 121/142 (85%) Strand = Plus / Plus Query: 159 ggtgcctatcaccatcctcacgtccgccgtcgccaagggggccgtgtgcatggatggtac 218 |||||| ||||||||||||| |||||||||| |||||| |||||||||||||| || || Sbjct: 789 ggtgcccatcaccatcctcaactccgccgtcgacaagggagccgtgtgcatggacgggac 848 Query: 219 gccgccggcctaccacatggacccggggtccggtgcagggaagaagagctggatcgtcaa 278 ||||||||| |||||| |||||||||| ||||| | || || ||||||| | ||||| Sbjct: 849 gccgccggcgtaccacctggacccgggctccggcggcggcaaccggagctgggtggtcaa 908 Query: 279 cctggagggaggcggatggtgc 300 ||||||||| ||||| |||||| Sbjct: 909 cctggagggcggcgggtggtgc 930 Score = 111 bits (56), Expect = 7e-21 Identities = 189/232 (81%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 793 tgcaccggtcatctcgacgccacctcgtgcttcttcccccagaa-ataatcggcagcata 851 ||||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||| Sbjct: 1420 tgcaccgaccatctcgacgccacctcgtgcttcttccctcagaacataatcgacggcata 1479 Query: 852 aatacccccatcttcctgctgaatgcagcctacgatacctggcagatccatgaaagcctg 911 || || |||||||||||||||||||| || ||||| |||||||||| | | |||||| Sbjct: 1480 aagacacccatcttcctgctgaatgcggcgtacgacgtctggcagatcgagcagagcctg 1539 Query: 912 gccccggacgtggccgaccacaacggcacgtggcgagcctgcaagtccaatcgtttagct 971 ||||| ||| || ||| || |||||| ||||||| |||||||| ||| || ||| Sbjct: 1540 gcccctaacgcagctgacaccagcggcacctggcgagtctgcaagttcaaccgcgcagcc 1599 Query: 972 tgcaacgcatcccagatgaaagtcttgcaagctttcagggaccagatggtgg 1023 |||||||| || ||| || | || |||||| |||||| || |||||||||| Sbjct: 1600 tgcaacgcgtctcagctgcagttcctgcaaggtttcagagatcagatggtgg 1651 Score = 87.7 bits (44), Expect = 1e-13 Identities = 151/186 (81%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 1052 gagctacggcctcttcatcaactcgtgcttcacgcacggccagtccaaagtcccggctac 1111 |||| |||| || |||||||||||||||||| | ||| |||||||| | | |||| || Sbjct: 1680 gagcaacgggctgttcatcaactcgtgcttcgctcactgccagtccgagctgacggccac 1739 Query: 1112 ttggaatgcaaatggctctcctactattcataataagagcattgcgaaatctgtgagtga 1171 ||||||| |||||||||| || | || || ||| | ||||| || ||||| |||| Sbjct: 1740 ctggaatgg---tggctctcctgctctccagaacaagggaattgcaaagtctgttggtga 1796 Query: 1172 ctggtactttggccgggctgaagtgagggccatcgattgcccctacccctgcgaccacac 1231 |||||||||||| || ||||| |||| |||||||||||||||||||||||| ||| | || Sbjct: 1797 ctggtactttggtcgagctgaggtgaaggccatcgattgcccctacccctgtgacaaaac 1856 Query: 1232 atgcca 1237 |||||| Sbjct: 1857 atgcca 1862 Score = 71.9 bits (36), Expect = 6e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 382 ggcatcttgagctccaaccccgctgagaaccctgatttctacagctggaaccgggtgatg 441 |||||| |||||||| | |||| || ||||| |||||| ||||||||||||| || | | Sbjct: 1012 ggcatcatgagctccgccgccgccgacaaccccgatttccacagctggaaccgcgtcaag 1071 Query: 442 gtccgctactgcgacggcgcgtccttcaccggcgaaggctacaacgcgggctcgaaggtc 501 |||||||||||||| ||| ||||||| ||||||| | || ||||| ||| | |||| | Sbjct: 1072 atccgctactgcgacagcgggtccttcgccggcgacgccttcaacgagggattgaagctg 1131 Query: 502 tatttccggggccagcgcat 521 | |||||||| |||||||| Sbjct: 1132 caattccgggggcagcgcat 1151 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 662 ccaccgtcaagtgtctcgccgacgcaggactcttcctggacgccgtcgacatctccggcg 721 ||||||||||||| ||| |||||| || |||||||| |||||||| ||| || |||||| Sbjct: 1289 ccaccgtcaagtgcctctccgacggcggcctcttcctcgacgccgtggacgtcgccggcg 1348 Query: 722 gc 723 || Sbjct: 1349 gc 1350
>dbj|AK107088.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G08, full insert sequence Length = 2170 Score = 115 bits (58), Expect = 5e-22 Identities = 121/142 (85%) Strand = Plus / Plus Query: 159 ggtgcctatcaccatcctcacgtccgccgtcgccaagggggccgtgtgcatggatggtac 218 |||||| ||||||||||||| |||||||||| |||||| |||||||||||||| || || Sbjct: 788 ggtgcccatcaccatcctcaactccgccgtcgacaagggagccgtgtgcatggacgggac 847 Query: 219 gccgccggcctaccacatggacccggggtccggtgcagggaagaagagctggatcgtcaa 278 ||||||||| |||||| |||||||||| ||||| | || || ||||||| | ||||| Sbjct: 848 gccgccggcgtaccacctggacccgggctccggcggcggcaaccggagctgggtggtcaa 907 Query: 279 cctggagggaggcggatggtgc 300 ||||||||| ||||| |||||| Sbjct: 908 cctggagggcggcgggtggtgc 929 Score = 111 bits (56), Expect = 7e-21 Identities = 189/232 (81%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 793 tgcaccggtcatctcgacgccacctcgtgcttcttcccccagaa-ataatcggcagcata 851 ||||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||| Sbjct: 1419 tgcaccgaccatctcgacgccacctcgtgcttcttccctcagaacataatcgacggcata 1478 Query: 852 aatacccccatcttcctgctgaatgcagcctacgatacctggcagatccatgaaagcctg 911 || || |||||||||||||||||||| || ||||| |||||||||| | | |||||| Sbjct: 1479 aagacacccatcttcctgctgaatgcggcgtacgacgtctggcagatcgagcagagcctg 1538 Query: 912 gccccggacgtggccgaccacaacggcacgtggcgagcctgcaagtccaatcgtttagct 971 ||||| ||| || ||| || |||||| ||||||| |||||||| ||| || ||| Sbjct: 1539 gcccctaacgcagctgacaccagcggcacctggcgagtctgcaagttcaaccgcgcagcc 1598 Query: 972 tgcaacgcatcccagatgaaagtcttgcaagctttcagggaccagatggtgg 1023 |||||||| || ||| || | || |||||| |||||| || |||||||||| Sbjct: 1599 tgcaacgcgtctcagctgcagttcctgcaaggtttcagagatcagatggtgg 1650 Score = 87.7 bits (44), Expect = 1e-13 Identities = 151/186 (81%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 1052 gagctacggcctcttcatcaactcgtgcttcacgcacggccagtccaaagtcccggctac 1111 |||| |||| || |||||||||||||||||| | ||| |||||||| | | |||| || Sbjct: 1679 gagcaacgggctgttcatcaactcgtgcttcgctcactgccagtccgagctgacggccac 1738 Query: 1112 ttggaatgcaaatggctctcctactattcataataagagcattgcgaaatctgtgagtga 1171 ||||||| |||||||||| || | || || ||| | ||||| || ||||| |||| Sbjct: 1739 ctggaatgg---tggctctcctgctctccagaacaagggaattgcaaagtctgttggtga 1795 Query: 1172 ctggtactttggccgggctgaagtgagggccatcgattgcccctacccctgcgaccacac 1231 |||||||||||| || ||||| |||| |||||||||||||||||||||||| ||| | || Sbjct: 1796 ctggtactttggtcgagctgaggtgaaggccatcgattgcccctacccctgtgacaaaac 1855 Query: 1232 atgcca 1237 |||||| Sbjct: 1856 atgcca 1861 Score = 71.9 bits (36), Expect = 6e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 382 ggcatcttgagctccaaccccgctgagaaccctgatttctacagctggaaccgggtgatg 441 |||||| |||||||| | |||| || ||||| |||||| ||||||||||||| || | | Sbjct: 1011 ggcatcatgagctccgccgccgccgacaaccccgatttccacagctggaaccgcgtcaag 1070 Query: 442 gtccgctactgcgacggcgcgtccttcaccggcgaaggctacaacgcgggctcgaaggtc 501 |||||||||||||| ||| ||||||| ||||||| | || ||||| ||| | |||| | Sbjct: 1071 atccgctactgcgacagcgggtccttcgccggcgacgccttcaacgagggattgaagctg 1130 Query: 502 tatttccggggccagcgcat 521 | |||||||| |||||||| Sbjct: 1131 caattccgggggcagcgcat 1150 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 662 ccaccgtcaagtgtctcgccgacgcaggactcttcctggacgccgtcgacatctccggcg 721 ||||||||||||| ||| |||||| || |||||||| |||||||| ||| || |||||| Sbjct: 1288 ccaccgtcaagtgcctctccgacggcggcctcttcctcgacgccgtggacgtcgccggcg 1347 Query: 722 gc 723 || Sbjct: 1348 gc 1349
>dbj|AK067689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117E22, full insert sequence Length = 1675 Score = 115 bits (58), Expect = 5e-22 Identities = 121/142 (85%) Strand = Plus / Plus Query: 159 ggtgcctatcaccatcctcacgtccgccgtcgccaagggggccgtgtgcatggatggtac 218 |||||| ||||||||||||| |||||||||| |||||| |||||||||||||| || || Sbjct: 530 ggtgcccatcaccatcctcaactccgccgtcgacaagggagccgtgtgcatggacgggac 589 Query: 219 gccgccggcctaccacatggacccggggtccggtgcagggaagaagagctggatcgtcaa 278 ||||||||| |||||| |||||||||| ||||| | || || ||||||| | ||||| Sbjct: 590 gccgccggcgtaccacctggacccgggctccggcggcggcaaccggagctgggtggtcaa 649 Query: 279 cctggagggaggcggatggtgc 300 ||||||||| ||||| |||||| Sbjct: 650 cctggagggcggcgggtggtgc 671 Score = 111 bits (56), Expect = 7e-21 Identities = 189/232 (81%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 793 tgcaccggtcatctcgacgccacctcgtgcttcttcccccagaa-ataatcggcagcata 851 ||||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||| Sbjct: 1161 tgcaccgaccatctcgacgccacctcgtgcttcttccctcagaacataatcgacggcata 1220 Query: 852 aatacccccatcttcctgctgaatgcagcctacgatacctggcagatccatgaaagcctg 911 || || |||||||||||||||||||| || ||||| |||||||||| | | |||||| Sbjct: 1221 aagacacccatcttcctgctgaatgcggcgtacgacgtctggcagatcgagcagagcctg 1280 Query: 912 gccccggacgtggccgaccacaacggcacgtggcgagcctgcaagtccaatcgtttagct 971 ||||| ||| || ||| || |||||| ||||||| |||||||| ||| || ||| Sbjct: 1281 gcccctaacgcagctgacaccagcggcacctggcgagtctgcaagttcaaccgcgcagcc 1340 Query: 972 tgcaacgcatcccagatgaaagtcttgcaagctttcagggaccagatggtgg 1023 |||||||| || ||| || | || |||||| |||||| || |||||||||| Sbjct: 1341 tgcaacgcgtctcagctgcagttcctgcaaggtttcagagatcagatggtgg 1392 Score = 85.7 bits (43), Expect = 4e-13 Identities = 141/173 (81%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 1065 ttcatcaactcgtgcttcacgcacggccagtccaaagtcccggctacttggaatgcaaat 1124 |||||||||||||||||| | ||| |||||||| | | |||| || ||||||| | Sbjct: 1434 ttcatcaactcgtgcttcgctcactgccagtccgagctgacggccacctggaatgg---t 1490 Query: 1125 ggctctcctactattcataataagagcattgcgaaatctgtgagtgactggtactttggc 1184 ||||||||| || | || || ||| | ||||| || ||||| |||||||||||||||| Sbjct: 1491 ggctctcctgctctccagaacaagggaattgcaaagtctgttggtgactggtactttggt 1550 Query: 1185 cgggctgaagtgagggccatcgattgcccctacccctgcgaccacacatgcca 1237 || ||||| |||| |||||||||||||||||||||||| ||| | |||||||| Sbjct: 1551 cgagctgaggtgaaggccatcgattgcccctacccctgtgacaaaacatgcca 1603 Score = 65.9 bits (33), Expect = 4e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 409 aaccctgatttctacagctggaaccgggtgatggtccgctactgcgacggcgcgtccttc 468 ||||| |||||| ||||||||||||| || | | |||||||||||||| ||| ||||||| Sbjct: 780 aaccccgatttccacagctggaaccgcgtcaagatccgctactgcgacagcgggtccttc 839 Query: 469 accggcgaaggctacaacgcgggctcgaaggtctatttccggggccagcgcat 521 ||||||| | || ||||| ||| | |||| | | |||||||| |||||||| Sbjct: 840 gccggcgacgccttcaacgagggattgaagctgcaattccgggggcagcgcat 892 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 662 ccaccgtcaagtgtctcgccgacgcaggactcttcctggacgccgtcgacatctccggcg 721 ||||||||||||| ||| |||||| || |||||||| |||||||| ||| || |||||| Sbjct: 1030 ccaccgtcaagtgcctctccgacggcggcctcttcctcgacgccgtggacgtcgccggcg 1089 Query: 722 gc 723 || Sbjct: 1090 gc 1091
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 83.8 bits (42), Expect = 2e-12 Identities = 63/70 (90%) Strand = Plus / Plus Query: 1168 gtgactggtactttggccgggctgaagtgagggccatcgattgcccctacccctgcgacc 1227 |||||||||||||||| || ||||| |||| |||||||||||||||||||||||| ||| Sbjct: 12105527 gtgactggtactttggtcgagctgaggtgaaggccatcgattgcccctacccctgtgaca 12105586 Query: 1228 acacatgcca 1237 | |||||||| Sbjct: 12105587 aaacatgcca 12105596 Score = 69.9 bits (35), Expect = 2e-08 Identities = 83/99 (83%) Strand = Plus / Plus Query: 202 gtgtgcatggatggtacgccgccggcctaccacatggacccggggtccggtgcagggaag 261 ||||||||||| || ||||||||||| |||||| |||||||||| ||||| | || || Sbjct: 12103709 gtgtgcatggacgggacgccgccggcgtaccacctggacccgggctccggcggcggcaac 12103768 Query: 262 aagagctggatcgtcaacctggagggaggcggatggtgc 300 ||||||| | |||||||||||||| ||||| |||||| Sbjct: 12103769 cggagctgggtggtcaacctggagggcggcgggtggtgc 12103807 Score = 65.9 bits (33), Expect = 4e-07 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 819 gtgcttcttcccccagaa-ataatcggcagcataaatacccccatcttcctgctgaatgc 877 |||||||||||| ||||| ||||||| | ||||||| || |||||||||||||||||||| Sbjct: 12104725 gtgcttcttccctcagaacataatcgacggcataaagacacccatcttcctgctgaatgc 12104784 Query: 878 agcctacga 886 || ||||| Sbjct: 12104785 ggcgtacga 12104793 Score = 60.0 bits (30), Expect = 2e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 415 gatttctacagctggaaccgggtgatggtccgctactgcgacggcgcgtccttcaccggc 474 |||||| ||||||||||||| || | | |||||||||||||| ||| ||||||| ||||| Sbjct: 12104012 gatttccacagctggaaccgcgtcaagatccgctactgcgacagcgggtccttcgccggc 12104071 Query: 475 ga 476 || Sbjct: 12104072 ga 12104073 Score = 48.1 bits (24), Expect = 0.088 Identities = 39/44 (88%) Strand = Plus / Plus Query: 159 ggtgcctatcaccatcctcacgtccgccgtcgccaagggggccg 202 |||||| ||||||||||||| |||||||||| |||||| |||| Sbjct: 12100774 ggtgcccatcaccatcctcaactccgccgtcgacaagggagccg 12100817 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Plus Query: 1052 gagctacggcctcttcatcaactcgtgcttcacgcacggccagtcc 1097 |||| |||| || |||||||||||||||||| | ||| |||||||| Sbjct: 12105254 gagcaacgggctgttcatcaactcgtgcttcgctcactgccagtcc 12105299
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 83.8 bits (42), Expect = 2e-12 Identities = 63/70 (90%) Strand = Plus / Plus Query: 1168 gtgactggtactttggccgggctgaagtgagggccatcgattgcccctacccctgcgacc 1227 |||||||||||||||| || ||||| |||| |||||||||||||||||||||||| ||| Sbjct: 151191 gtgactggtactttggtcgagctgaggtgaaggccatcgattgcccctacccctgtgaca 151250 Query: 1228 acacatgcca 1237 | |||||||| Sbjct: 151251 aaacatgcca 151260 Score = 69.9 bits (35), Expect = 2e-08 Identities = 83/99 (83%) Strand = Plus / Plus Query: 202 gtgtgcatggatggtacgccgccggcctaccacatggacccggggtccggtgcagggaag 261 ||||||||||| || ||||||||||| |||||| |||||||||| ||||| | || || Sbjct: 149373 gtgtgcatggacgggacgccgccggcgtaccacctggacccgggctccggcggcggcaac 149432 Query: 262 aagagctggatcgtcaacctggagggaggcggatggtgc 300 ||||||| | |||||||||||||| ||||| |||||| Sbjct: 149433 cggagctgggtggtcaacctggagggcggcgggtggtgc 149471 Score = 65.9 bits (33), Expect = 4e-07 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 819 gtgcttcttcccccagaa-ataatcggcagcataaatacccccatcttcctgctgaatgc 877 |||||||||||| ||||| ||||||| | ||||||| || |||||||||||||||||||| Sbjct: 150389 gtgcttcttccctcagaacataatcgacggcataaagacacccatcttcctgctgaatgc 150448 Query: 878 agcctacga 886 || ||||| Sbjct: 150449 ggcgtacga 150457 Score = 60.0 bits (30), Expect = 2e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 415 gatttctacagctggaaccgggtgatggtccgctactgcgacggcgcgtccttcaccggc 474 |||||| ||||||||||||| || | | |||||||||||||| ||| ||||||| ||||| Sbjct: 149676 gatttccacagctggaaccgcgtcaagatccgctactgcgacagcgggtccttcgccggc 149735 Query: 475 ga 476 || Sbjct: 149736 ga 149737 Score = 48.1 bits (24), Expect = 0.088 Identities = 39/44 (88%) Strand = Plus / Plus Query: 159 ggtgcctatcaccatcctcacgtccgccgtcgccaagggggccg 202 |||||| ||||||||||||| |||||||||| |||||| |||| Sbjct: 146438 ggtgcccatcaccatcctcaactccgccgtcgacaagggagccg 146481 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Plus Query: 1052 gagctacggcctcttcatcaactcgtgcttcacgcacggccagtcc 1097 |||| |||| || |||||||||||||||||| | ||| |||||||| Sbjct: 150918 gagcaacgggctgttcatcaactcgtgcttcgctcactgccagtcc 150963
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 83.8 bits (42), Expect = 2e-12 Identities = 63/70 (90%) Strand = Plus / Plus Query: 1168 gtgactggtactttggccgggctgaagtgagggccatcgattgcccctacccctgcgacc 1227 |||||||||||||||| || ||||| |||| |||||||||||||||||||||||| ||| Sbjct: 72467 gtgactggtactttggtcgagctgaggtgaaggccatcgattgcccctacccctgtgaca 72526 Query: 1228 acacatgcca 1237 | |||||||| Sbjct: 72527 aaacatgcca 72536 Score = 69.9 bits (35), Expect = 2e-08 Identities = 83/99 (83%) Strand = Plus / Plus Query: 202 gtgtgcatggatggtacgccgccggcctaccacatggacccggggtccggtgcagggaag 261 ||||||||||| || ||||||||||| |||||| |||||||||| ||||| | || || Sbjct: 70649 gtgtgcatggacgggacgccgccggcgtaccacctggacccgggctccggcggcggcaac 70708 Query: 262 aagagctggatcgtcaacctggagggaggcggatggtgc 300 ||||||| | |||||||||||||| ||||| |||||| Sbjct: 70709 cggagctgggtggtcaacctggagggcggcgggtggtgc 70747 Score = 65.9 bits (33), Expect = 4e-07 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 819 gtgcttcttcccccagaa-ataatcggcagcataaatacccccatcttcctgctgaatgc 877 |||||||||||| ||||| ||||||| | ||||||| || |||||||||||||||||||| Sbjct: 71665 gtgcttcttccctcagaacataatcgacggcataaagacacccatcttcctgctgaatgc 71724 Query: 878 agcctacga 886 || ||||| Sbjct: 71725 ggcgtacga 71733 Score = 60.0 bits (30), Expect = 2e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 415 gatttctacagctggaaccgggtgatggtccgctactgcgacggcgcgtccttcaccggc 474 |||||| ||||||||||||| || | | |||||||||||||| ||| ||||||| ||||| Sbjct: 70952 gatttccacagctggaaccgcgtcaagatccgctactgcgacagcgggtccttcgccggc 71011 Query: 475 ga 476 || Sbjct: 71012 ga 71013 Score = 48.1 bits (24), Expect = 0.088 Identities = 39/44 (88%) Strand = Plus / Plus Query: 159 ggtgcctatcaccatcctcacgtccgccgtcgccaagggggccg 202 |||||| ||||||||||||| |||||||||| |||||| |||| Sbjct: 67714 ggtgcccatcaccatcctcaactccgccgtcgacaagggagccg 67757 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Plus Query: 1052 gagctacggcctcttcatcaactcgtgcttcacgcacggccagtcc 1097 |||| |||| || |||||||||||||||||| | ||| |||||||| Sbjct: 72194 gagcaacgggctgttcatcaactcgtgcttcgctcactgccagtcc 72239
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17, complete sequence Length = 202430 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 358 atggagaggcagctggagttccg 380 ||||||||||||||||||||||| Sbjct: 144035 atggagaggcagctggagttccg 144013
>emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chromosome 17, complete sequence Length = 210893 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 358 atggagaggcagctggagttccg 380 ||||||||||||||||||||||| Sbjct: 180122 atggagaggcagctggagttccg 180144
>ref|NM_001072341.1| Oryza sativa (japonica cultivar-group) Os11g0158700 (Os11g0158700) mRNA, complete cds Length = 786 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 702 cgccgtcgacatctccggcggc 723 |||||||||||||||||||||| Sbjct: 726 cgccgtcgacatctccggcggc 705
>gb|DQ645941.1| Eucalyptus globulus subsp. globulus pectin acetylesterase (PAE2) mRNA, partial cds Length = 1427 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 871 tgaatgcagcctacgatacctggcag 896 |||||||||| ||||||||||||||| Sbjct: 665 tgaatgcagcttacgatacctggcag 690
>emb|CT987184.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 940 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 871 tgaatgcagcctacgatacctggcag 896 |||||||||| ||||||||||||||| Sbjct: 233 tgaatgcagcttacgatacctggcag 258
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 702 cgccgtcgacatctccggcggc 723 |||||||||||||||||||||| Sbjct: 105500 cgccgtcgacatctccggcggc 105521
>ref|XM_453168.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D02244g predicted mRNA Length = 2178 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1375 ctgcaaaaacttaatatcaaga 1396 |||||||||||||||||||||| Sbjct: 337 ctgcaaaaacttaatatcaaga 358
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 702 cgccgtcgacatctccggcggc 723 |||||||||||||||||||||| Sbjct: 2825693 cgccgtcgacatctccggcggc 2825714
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1375 ctgcaaaaacttaatatcaaga 1396 |||||||||||||||||||||| Sbjct: 190893 ctgcaaaaacttaatatcaaga 190914
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 ggagaagatgaggatgaccaag 99 |||||||||||||||||||||| Sbjct: 1085646 ggagaagatgaggatgaccaag 1085625
>gb|AC079444.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-395k5, complete sequence Length = 171451 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 992 agtcttgcaagctttcagggac 1013 |||||||||||||||||||||| Sbjct: 148267 agtcttgcaagctttcagggac 148288
>gb|AC079681.38| Mus musculus strain C57BL/6J chromosome 10 clone rp23-310n21, complete sequence Length = 216807 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 992 agtcttgcaagctttcagggac 1013 |||||||||||||||||||||| Sbjct: 93712 agtcttgcaagctttcagggac 93733
>gb|AC186974.5| Canis Familiaris chromosome 26, clone XX-245N19, complete sequence Length = 200735 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 ggcggctccgccggggggctg 609 ||||||||||||||||||||| Sbjct: 79005 ggcggctccgccggggggctg 79025
>gb|AC184830.5| Canis Familiaris chromosome 26, clone XX-4H7, complete sequence Length = 218386 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 ggcggctccgccggggggctg 609 ||||||||||||||||||||| Sbjct: 81048 ggcggctccgccggggggctg 81068
>gb|AC183572.6| Canis Familiaris chromosome 26, clone XX-153C2, complete sequence Length = 181036 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 ggcggctccgccggggggctg 609 ||||||||||||||||||||| Sbjct: 10336 ggcggctccgccggggggctg 10356
>gb|DQ645940.1| Eucalyptus globulus subsp. globulus pectin acetylesterase (PAE1) mRNA, partial cds Length = 1188 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1199 ggccatcgattgcccctaccc 1219 ||||||||||||||||||||| Sbjct: 993 ggccatcgattgcccctaccc 1013
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 ccgctactgcgacggcgcgtc 464 ||||||||||||||||||||| Sbjct: 3545472 ccgctactgcgacggcgcgtc 3545492
>gb|AC107933.6| Homo sapiens chromosome 8, clone RP11-959C6, complete sequence Length = 208341 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1300 ttccagagaagacaaatatgt 1320 ||||||||||||||||||||| Sbjct: 146912 ttccagagaagacaaatatgt 146892
>gb|AC084030.5| Homo sapiens BAC clone RP11-205L13 from 2, complete sequence Length = 100731 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 tggagaggcagctggagttcc 379 ||||||||||||||||||||| Sbjct: 25094 tggagaggcagctggagttcc 25114
>dbj|AP004712.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1819F10, complete sequence Length = 149677 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1300 ttccagagaagacaaatatgt 1320 ||||||||||||||||||||| Sbjct: 41030 ttccagagaagacaaatatgt 41050 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 217,232,740 Number of extensions: 11183210 Number of successful extensions: 209566 Number of sequences better than 10.0: 26 Number of HSP's gapped: 209560 Number of HSP's successfully gapped: 62 Length of query: 1431 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1408 Effective length of database: 18,503,978,556 Effective search space: 26053601806848 Effective search space used: 26053601806848 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
