ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK121114:Os01g0173100 50 2e-06
2AK071524:Os12g0489300 49 2e-06
3AK121619:Os06g0602600 46 2e-05
4Os11g0130400:Os11g0130400 28 4.1
5AK099062:Os07g0178100 27 9.2
6AK065742:Os07g0178100 27 9.2

>AK121114:Os01g0173100 |
          Length = 152
 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = +1

Query: 88  TSNVIQISS-KRDTGFYVFLSKLFLMDFGEIELHGLGDAITICVKVGEALTRYGYTTIKR 264
           +SN IQ+S+ K+   FYV L+K ++   G++EL  LG AI   V V E L   G+   K+
Sbjct: 41  SSNRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSALGMAIATVVTVAEILKNNGFAVEKK 100

Query: 265 IETSTL 282
           I TST+
Sbjct: 101 IRTSTV 106



to top

>AK071524:Os12g0489300 |
          Length = 169

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +1

Query: 55  DTQKAHKQIKPTSNVIQISS-KRDTGFYVFLSKLFLMDFGEIELHGLGDAITICVKVGEA 231
           D ++A        N IQ+S+ K+   FYV L+K ++ ++ E+EL  LG AI   V V E 
Sbjct: 46  DEEEAEAGASAKKNRIQVSTNKKPLYFYVNLAKRYMQNYDEVELSALGMAIGTVVTVAEI 105

Query: 232 LTRYGYTTIKRIETSTL 282
           L   G  T K+I TST+
Sbjct: 106 LKNNGLATEKKILTSTI 122



to top

>AK121619:Os06g0602600 |
          Length = 132

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +1

Query: 25  ERKQDCYSKMDTQKAHKQIKPTSNVIQISS-KRDTGFYVFLSKLFLMDFGEIELHGLGDA 201
           E   +  S +   + HK+     N IQ+S+ K+   FYV L+K ++    E+EL  LG A
Sbjct: 2   EEVTEAVSNLSITEPHKK-----NRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMA 56

Query: 202 ITICVKVGEALTRYGYTTIKRIETSTL 282
           I   V V E L   G    K+I TST+
Sbjct: 57  IATVVTVAEILKNNGLAVEKKIMTSTV 83



to top

>Os11g0130400:Os11g0130400 |
          Length = 297

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 480 ATHKERQKLLLQNTCVKFCFEILLLYLVASFINCILSV 593
           A    R++ L    C  FC  +LLL L A+F+  +  V
Sbjct: 72  AARPARRRRLRHACCAAFCAALLLLLLAAAFVGAVYLV 109



to top

>AK099062:Os07g0178100 |
          Length = 886

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 456 KLRSAVLTATHKERQKLLLQNTCVKFCFEILLLYLVASF 572
           + R+AVL  +HKE++ +      + F  ++ LL+L A+F
Sbjct: 809 RYRAAVLMDSHKEKEAIAELTRAIAFKADLHLLHLRAAF 847



to top

>AK065742:Os07g0178100 |
          Length = 886

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 456 KLRSAVLTATHKERQKLLLQNTCVKFCFEILLLYLVASF 572
           + R+AVL  +HKE++ +      + F  ++ LL+L A+F
Sbjct: 809 RYRAAVLMDSHKEKEAIAELTRAIAFKADLHLLHLRAAF 847


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 14,111,700
Number of extensions: 253304
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 6
Length of query: 220
Length of database: 15,399,855
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,515,878
Effective search space: 1416452994
Effective search space used: 1416452994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top