| Clone Name | FLbaf51j04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC087209.7| Homo sapiens chromosome 8, clone RP11-31C7, complete sequence Length = 144094 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 537 tttgaaattctgctgctttatctagt 562 ||||||||||| |||||||||||||| Sbjct: 40391 tttgaaattcttctgctttatctagt 40366
>gb|AC016879.6| Homo sapiens chromosome 8, clone RP11-97P19, complete sequence Length = 182556 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 537 tttgaaattctgctgctttatctagt 562 ||||||||||| |||||||||||||| Sbjct: 165709 tttgaaattcttctgctttatctagt 165684
>gb|AC130209.3| Mus musculus BAC clone RP24-369J19 from chromosome 6, complete sequence Length = 154867 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 aaaagtaaatagagtaacttt 436 ||||||||||||||||||||| Sbjct: 99203 aaaagtaaatagagtaacttt 99223
>gb|AC166249.3| Mus musculus 10 BAC RP23-411N5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203983 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 aaaagtaaatagagtaacttt 436 ||||||||||||||||||||| Sbjct: 35439 aaaagtaaatagagtaacttt 35459
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 191 tgggagatgccatcactatctgtgt 215 |||||||||||||||||||| |||| Sbjct: 3902436 tgggagatgccatcactatccgtgt 3902460
>dbj|BS000028.1| Pan troglodytes chromosome 22 clone:PTB-087F19, map 22, complete sequences Length = 223409 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 ttttacaaaatacctgtgtaa 528 ||||||||||||||||||||| Sbjct: 69364 ttttacaaaatacctgtgtaa 69344
>gb|AC113170.2| Homo sapiens chromosome 3 clone RP11-604J9, complete sequence Length = 182020 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 tgttttgaaattctgctgctt 554 ||||||||||||||||||||| Sbjct: 100433 tgttttgaaattctgctgctt 100413
>dbj|AP006350.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48J22, TM0335b, complete sequence Length = 69399 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 aaaggaaagaaagcaggattg 41 ||||||||||||||||||||| Sbjct: 46541 aaaggaaagaaagcaggattg 46561
>gb|AC158407.1| Mus musculus BAC RP23-23E11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187033 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 aaaagtaaatagagtaacttt 436 ||||||||||||||||||||| Sbjct: 180932 aaaagtaaatagagtaacttt 180952
>dbj|AP001667.1| Homo sapiens genomic DNA, chromosome 21q, section 11/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 ttttacaaaatacctgtgtaa 528 ||||||||||||||||||||| Sbjct: 165551 ttttacaaaatacctgtgtaa 165531
>gb|AC078897.20| Mus musculus strain C57BL/6J chromosome 3 clone rp23-105k2, complete sequence Length = 200088 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 taaaggaaagaaagcaggatt 40 ||||||||||||||||||||| Sbjct: 33324 taaaggaaagaaagcaggatt 33304
>dbj|AP000962.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821P16, LL56-APP region, complete sequence Length = 185300 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 ttttacaaaatacctgtgtaa 528 ||||||||||||||||||||| Sbjct: 97095 ttttacaaaatacctgtgtaa 97075
>emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chromosome X, complete sequence Length = 160779 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 aaagttttgttttgaaattct 547 ||||||||||||||||||||| Sbjct: 87996 aaagttttgttttgaaattct 88016
>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197962 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 ctagcaaattgagaagtgca 470 |||||||||||||||||||| Sbjct: 9287 ctagcaaattgagaagtgca 9268
>gb|DQ145217.1| Drosophila miranda neo-Y CG5721 gene, partial sequence Length = 1049 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctgaagctgctgaagccgct 306 |||||||||||||||||||| Sbjct: 579 ctgaagctgctgaagccgct 560
>gb|DQ145216.1| Drosophila miranda neo-X CG5721 gene, partial sequence Length = 1134 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ctgaagctgctgaagccgct 306 |||||||||||||||||||| Sbjct: 473 ctgaagctgctgaagccgct 492
>gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230186 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 ctagcaaattgagaagtgca 470 |||||||||||||||||||| Sbjct: 140389 ctagcaaattgagaagtgca 140408
>ref|XM_505225.1| Yarrowia lipolytica CLIB122, YALI0F09856g predicted mRNA Length = 1569 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ctctcgctcctgaagctgct 297 |||||||||||||||||||| Sbjct: 1473 ctctcgctcctgaagctgct 1454
>gb|AC124345.4| Mus musculus BAC clone RP24-459N19 from chromosome 15, complete sequence Length = 184532 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 attaaaggaaagaaagcagg 37 |||||||||||||||||||| Sbjct: 55574 attaaaggaaagaaagcagg 55593
>gb|AC121781.3| Mus musculus BAC clone RP23-363D24 from chromosome X, complete sequence Length = 174187 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tctccaagctcttccttatg 162 |||||||||||||||||||| Sbjct: 60158 tctccaagctcttccttatg 60139
>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence Length = 195696 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 cacaaagaaagacagaagct 505 |||||||||||||||||||| Sbjct: 55683 cacaaagaaagacagaagct 55702
>gb|AC023484.5| Homo sapiens chromosome 3 clone RP11-454F24 map 3p, complete sequence Length = 192875 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aaagaggaaagaaggctaag 342 |||||||||||||||||||| Sbjct: 79083 aaagaggaaagaaggctaag 79102
>gb|AC024167.6| Homo sapiens chromosome 3 clone RP11-453F3 map 3p, complete sequence Length = 188719 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aaagaggaaagaaggctaag 342 |||||||||||||||||||| Sbjct: 11316 aaagaggaaagaaggctaag 11335
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cgaaaagggccctaaaagag 328 |||||||||||||||||||| Sbjct: 2207174 cgaaaagggccctaaaagag 2207155
>gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175073 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gtgtaaagttttgttttgaa 542 |||||||||||||||||||| Sbjct: 97302 gtgtaaagttttgttttgaa 97321
>gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 215272 Score = 40.1 bits (20), Expect = 9.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 tgagacttctactctcgctcctgaagctgctg 298 |||| ||||||||||| ||||||| ||||||| Sbjct: 185364 tgagccttctactctcactcctgaggctgctg 185395
>emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chromosome X, complete sequence Length = 200643 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 520 cctgtgtaaagttttgttttgaaa 543 ||||||| |||||||||||||||| Sbjct: 181156 cctgtgtgaagttttgttttgaaa 181179
>emb|AL583804.5| Human DNA sequence from clone RP11-276E17 on chromosome 1 Contains the 5' end of a novel gene, a novel gene and a pseudogene similar to flavin-containing monooxygenase proteins, complete sequence Length = 168837 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ttttacaaaatacctgtgta 527 |||||||||||||||||||| Sbjct: 2832 ttttacaaaatacctgtgta 2813
>gb|AC005154.1| Homo sapiens PAC clone RP4-777O23 from 7, complete sequence Length = 151630 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ggattgctatagcaaaatgg 55 |||||||||||||||||||| Sbjct: 141944 ggattgctatagcaaaatgg 141925
>ref|NM_001018758.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3A12.01c), partial mRNA Length = 1395 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 aagggccctaaaagaggaaa 332 |||||||||||||||||||| Sbjct: 474 aagggccctaaaagaggaaa 493
>emb|Z95395.1|SPAC3A12 S.pombe chromosome I cosmid c3A12 Length = 37013 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aagggccctaaaagaggaaa 332 |||||||||||||||||||| Sbjct: 641 aagggccctaaaagaggaaa 622
>emb|BX470127.2| Mouse DNA sequence from clone RP24-280A6 on chromosome 4, complete sequence Length = 142803 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 tcttcctctccaagctcttcctta 160 |||||||||||| ||||||||||| Sbjct: 105558 tcttcctctccatgctcttcctta 105535
>emb|CR385056.20| Wallaby DNA sequence from clone GRWB-43E9, complete sequence Length = 153276 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 taaagttttgttttgaaatt 545 |||||||||||||||||||| Sbjct: 141192 taaagttttgttttgaaatt 141173
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence Length = 203106 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 attaaaggaaagaaagcagg 37 |||||||||||||||||||| Sbjct: 81981 attaaaggaaagaaagcagg 81962
>gb|AC084546.1|CBRG30J20 Caenorhabditis briggsae cosmid G30J20, complete sequence Length = 35833 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ttcctctccaagctcttcct 158 |||||||||||||||||||| Sbjct: 32960 ttcctctccaagctcttcct 32941
>gb|AC091719.3| Pan troglodytes clone RP43-26K2, complete sequence Length = 189864 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ggattgctatagcaaaatgg 55 |||||||||||||||||||| Sbjct: 146089 ggattgctatagcaaaatgg 146070
>emb|BX324142.7| Zebrafish DNA sequence from clone CH211-196F19 in linkage group 20, complete sequence Length = 177066 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 ttgttttgaaattctgctgc 552 |||||||||||||||||||| Sbjct: 143290 ttgttttgaaattctgctgc 143309
>gb|AC155327.3| Mus musculus 6 BAC RP24-176G23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 148183 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 ctagcaaattgagaagtgca 470 |||||||||||||||||||| Sbjct: 146717 ctagcaaattgagaagtgca 146698
>emb|AL831764.16| Mouse DNA sequence from clone RP23-203A3 on chromosome 2, complete sequence Length = 195821 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 aagttttgttttgaaattct 547 |||||||||||||||||||| Sbjct: 58272 aagttttgttttgaaattct 58291
>gb|AY110704.1| Zea mays CL16117_1 mRNA sequence Length = 973 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 gtgcattcctataacaaaac 610 |||||||||||||||||||| Sbjct: 284 gtgcattcctataacaaaac 303
>gb|AC153542.4| Mus musculus 10 BAC RP23-463O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187858 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gtgtaaagttttgttttgaa 542 |||||||||||||||||||| Sbjct: 18851 gtgtaaagttttgttttgaa 18870
>emb|BX005240.7| Mouse DNA sequence from clone RP23-185M16 on chromosome X, complete sequence Length = 197310 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tctccaagctcttccttatg 162 |||||||||||||||||||| Sbjct: 76265 tctccaagctcttccttatg 76284
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ctctcgctcctgaagctgct 297 |||||||||||||||||||| Sbjct: 1342962 ctctcgctcctgaagctgct 1342981 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 131,711,233 Number of extensions: 7839529 Number of successful extensions: 156537 Number of sequences better than 10.0: 43 Number of HSP's gapped: 156537 Number of HSP's successfully gapped: 43 Length of query: 661 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 639 Effective length of database: 18,508,616,841 Effective search space: 11827006161399 Effective search space used: 11827006161399 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)