ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51i24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY013753.1| Aegilops tauschii glutathione-S-transferase 2 and... 60 2e-05
2gb|AY513748.1| Oreochromis mossambicus calmodulin mRNA, complete... 44 1.3
3emb|X99997.1|BFPAL B.finlaysoniana mRNA for phenylalanine ammoni... 44 1.3
4emb|AL627228.31| Mouse DNA sequence from clone RP23-137L22 on ch... 44 1.3
5emb|CT831640.1| Oryza sativa (indica cultivar-group) cDNA clone:... 42 5.2
6ref|NM_001064967.1| Oryza sativa (japonica cultivar-group) Os06g... 42 5.2
7ref|XM_512484.2| PREDICTED: Pan troglodytes coagulation factor I... 42 5.2
8gb|AC080144.11| Mus musculus chromosome 6, clone RP23-237K24, co... 42 5.2
9ref|NM_003950.2| Homo sapiens coagulation factor II (thrombin) r... 42 5.2
10gb|AC107394.3| Homo sapiens BAC clone RP11-617I14 from 4, comple... 42 5.2
11gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, com... 42 5.2
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
14dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
15gb|AY643809.1| Acanthopagrus schlegelii preproghrelin gene, comp... 42 5.2
16dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 42 5.2
17gb|AF384819.2|AF384819 Homo sapiens coagulation factor II recept... 42 5.2
18dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
19dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
20gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 42 5.2
21dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
22gb|AC027661.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 42 5.2
23dbj|AK110236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.2
24dbj|AK105794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.2
25dbj|AK059727.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.2
26gb|AF055917.1|AF055917 Homo sapiens protease-activated receptor ... 42 5.2
27emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chro... 42 5.2
28emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chro... 42 5.2
29emb|AL928551.8| Mouse DNA sequence from clone RP23-246P12 on chr... 42 5.2

>gb|AY013753.1| Aegilops tauschii glutathione-S-transferase 2 and glutathione
             S-transferase 1 genes, complete cds
          Length = 13710
 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 2     aataccatctccgagcctctcacaagaaccaactatgtcctatggagagc 51
             ||||||||||||||||||||||| | |||||||||| | |||||| ||||
Sbjct: 10513 aataccatctccgagcctctcactaaaaccaactatattctatggcgagc 10464



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>gb|AY513748.1| Oreochromis mossambicus calmodulin mRNA, complete cds
          Length = 773

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 957 gaacaattctcaatggaaaaag 978
           ||||||||||||||||||||||
Sbjct: 701 gaacaattctcaatggaaaaag 722



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>emb|X99997.1|BFPAL B.finlaysoniana mRNA for phenylalanine ammonia-lyase
          Length = 2249

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 1040 tcaccgaccacatcacccataagctc 1065
            ||||||||||| ||||||||||||||
Sbjct: 940  tcaccgaccacctcacccataagctc 965



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>emb|AL627228.31| Mouse DNA sequence from clone RP23-137L22 on chromosome 4, complete
              sequence
          Length = 193813

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 746    aagctggtggtggtggcggagg 767
              ||||||||||||||||||||||
Sbjct: 139895 aagctggtggtggtggcggagg 139874



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>emb|CT831640.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA034J04, full
           insert sequence
          Length = 1526

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 747 agctggtggtggtggcggagg 767
           |||||||||||||||||||||
Sbjct: 92  agctggtggtggtggcggagg 72



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>ref|NM_001064967.1| Oryza sativa (japonica cultivar-group) Os06g0693200 (Os06g0693200)
           mRNA, complete cds
          Length = 1567

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 747 agctggtggtggtggcggagg 767
           |||||||||||||||||||||
Sbjct: 131 agctggtggtggtggcggagg 111



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>ref|XM_512484.2| PREDICTED: Pan troglodytes coagulation factor II (thrombin)
            receptor-like 3 (F2RL3), mRNA
          Length = 2882

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 683  gtggcggcagaggcagagatg 703
            |||||||||||||||||||||
Sbjct: 2671 gtggcggcagaggcagagatg 2691



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>gb|AC080144.11| Mus musculus chromosome 6, clone RP23-237K24, complete sequence
          Length = 184091

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 680   gcggtggcggcagaggcagag 700
             |||||||||||||||||||||
Sbjct: 53718 gcggtggcggcagaggcagag 53698



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>ref|NM_003950.2| Homo sapiens coagulation factor II (thrombin) receptor-like 3
            (F2RL3), mRNA
          Length = 2731

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 683  gtggcggcagaggcagagatg 703
            |||||||||||||||||||||
Sbjct: 2520 gtggcggcagaggcagagatg 2540



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>gb|AC107394.3| Homo sapiens BAC clone RP11-617I14 from 4, complete sequence
          Length = 170971

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1217  caagtctttggtgtcatcaaa 1237
             |||||||||||||||||||||
Sbjct: 52514 caagtctttggtgtcatcaaa 52534



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>gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, complete sequence
          Length = 248281

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 683    gtggcggcagaggcagagatg 703
              |||||||||||||||||||||
Sbjct: 207543 gtggcggcagaggcagagatg 207563



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 680      gcggtggcggcagaggcagag 700
                |||||||||||||||||||||
Sbjct: 13594877 gcggtggcggcagaggcagag 13594857



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 917     ataatcatatttcaaaggatt 937
               |||||||||||||||||||||
Sbjct: 9629898 ataatcatatttcaaaggatt 9629878



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 747      agctggtggtggtggcggagg 767
                |||||||||||||||||||||
Sbjct: 28557748 agctggtggtggtggcggagg 28557728



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>gb|AY643809.1| Acanthopagrus schlegelii preproghrelin gene, complete cds
          Length = 3945

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1231 catcaaaatctcatcagaaag 1251
            |||||||||||||||||||||
Sbjct: 1157 catcaaaatctcatcagaaag 1137



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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 459     gctgatctctttcattgtcgc 479
               |||||||||||||||||||||
Sbjct: 1862688 gctgatctctttcattgtcgc 1862708



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>gb|AF384819.2|AF384819 Homo sapiens coagulation factor II receptor-like 3 (F2RL3) gene,
            complete cds
          Length = 11828

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 683  gtggcggcagaggcagagatg 703
            |||||||||||||||||||||
Sbjct: 3825 gtggcggcagaggcagagatg 3845



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>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0532H03
          Length = 166128

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 747    agctggtggtggtggcggagg 767
              |||||||||||||||||||||
Sbjct: 164781 agctggtggtggtggcggagg 164761



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>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0550B04
          Length = 150131

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 747   agctggtggtggtggcggagg 767
             |||||||||||||||||||||
Sbjct: 49226 agctggtggtggtggcggagg 49206



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>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187215

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 910    tagaaaaataatcatatttca 930
              |||||||||||||||||||||
Sbjct: 116701 tagaaaaataatcatatttca 116681



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>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 917   ataatcatatttcaaaggatt 937
             |||||||||||||||||||||
Sbjct: 69995 ataatcatatttcaaaggatt 69975



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>gb|AC027661.1| Oryza sativa (japonica cultivar-group) BAC nbxb0049A03 chromosome 10,
             complete sequence
          Length = 162101

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 680   gcggtggcggcagaggcagag 700
             |||||||||||||||||||||
Sbjct: 63879 gcggtggcggcagaggcagag 63859



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>dbj|AK110236.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-F11, full
           insert sequence
          Length = 4386

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 553 ctcttcggcatgatccgcaac 573
           |||||||||||||||||||||
Sbjct: 956 ctcttcggcatgatccgcaac 976



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>dbj|AK105794.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H11, full
           insert sequence
          Length = 1567

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 747 agctggtggtggtggcggagg 767
           |||||||||||||||||||||
Sbjct: 131 agctggtggtggtggcggagg 111



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>dbj|AK059727.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C12, full
           insert sequence
          Length = 1064

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 747 agctggtggtggtggcggagg 767
           |||||||||||||||||||||
Sbjct: 54  agctggtggtggtggcggagg 34



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>gb|AF055917.1|AF055917 Homo sapiens protease-activated receptor 4 mRNA, complete cds
          Length = 4895

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 683  gtggcggcagaggcagagatg 703
            |||||||||||||||||||||
Sbjct: 2520 gtggcggcagaggcagagatg 2540



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>emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chromosome 4, complete
             sequence
          Length = 151967

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   tgcctatacaccatggctcat 194
             |||||||||||||||||||||
Sbjct: 16210 tgcctatacaccatggctcat 16190



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>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
             sequence
          Length = 167375

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    gtacatatatcaaaccattgt 110
             |||||||||||||||||||||
Sbjct: 88449 gtacatatatcaaaccattgt 88469



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>emb|AL928551.8| Mouse DNA sequence from clone RP23-246P12 on chromosome 4, complete
              sequence
          Length = 215620

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1226   ggtgtcatcaaaatctcatca 1246
              |||||||||||||||||||||
Sbjct: 147431 ggtgtcatcaaaatctcatca 147451


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 253,912,692
Number of extensions: 14871830
Number of successful extensions: 292519
Number of sequences better than 10.0: 29
Number of HSP's gapped: 292519
Number of HSP's successfully gapped: 29
Length of query: 1381
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1358
Effective length of database: 18,503,978,556
Effective search space: 25128402879048
Effective search space used: 25128402879048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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