| Clone Name | FLbaf51i23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089K24, full insert sequence Length = 2163 Score = 450 bits (227), Expect = e-122 Identities = 452/527 (85%) Strand = Plus / Plus Query: 192 tgagctgcaagtggccattatcagaatgggtgaaagtaacgagaatatccagttttcatg 251 |||||||||||| ||||||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 160 tgagctgcaagttaccattatcagaatggatggtagtaatgagaatatccaattctcatg 219 Query: 252 gggaaataagagagcaaaaggtggtgccaagatggatacacagttctatggttccttcac 311 ||| || |||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct: 220 ggggaagaagagagcaaaaggtggtattaagatggatacacagttttatgactccttcac 279 Query: 312 ctttgacaatgtgaagtactcactgtatgactgtgtatatctttttaaaaatggagaacc 371 |||||||||||||||||||||||||||||| ||||||||||||||| | ||| || | Sbjct: 280 atttgacaatgtgaagtactcactgtatgacaatgtatatctttttaagagtggtgagtc 339 Query: 372 tgaaccatacattggaaagatagtaaagatatggcagcaaaatgaagctaagaaagtaaa 431 |||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 340 tgaaccttacattggaaagataataaagatatggcagcaaaatcaggctaagaaagtaaa 399 Query: 432 gattctttggtttttcaccccggatgagatcagaaattatttagaaggccccgtggtgga 491 ||||||||||||||| |||||||||||| |||| ||||| ||||| || |||| Sbjct: 400 gattctttggttttttctcccggatgagattcgaaaacatttaagtggccctgtaatgga 459 Query: 492 gaatgagatatttcttgcttctggtgatggcactggccttgccgatatcaacccactgga 551 || |||||||||||||||| |||||| ||| ||||||||| ||||||||||||||||| Sbjct: 460 aaaggagatatttcttgcttgtggtgaaggcgttggccttgctgatatcaacccactgga 519 Query: 552 atctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaatcgccagcc 611 | |||||| ||| |||||||| || ||||||||||||||||||| |||||||| || || Sbjct: 520 agctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaatcgtcaacc 579 Query: 612 taccccaaaggaacaaacggtcgctgattatatcttctataggttttttgatgttggaaa 671 | |||| | ||||| | | | ||||||||||||||||| ||||||||||||||| | Sbjct: 580 ttcccccagggaactagcaatggctgattatatcttctacaggttttttgatgttaacag 639 Query: 672 ctgcacactttctgagcaagtacctgagaaaattgtagggctggaag 718 |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 640 ttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 686 Score = 172 bits (87), Expect = 4e-39 Identities = 228/275 (82%) Strand = Plus / Plus Query: 1300 gctgataaggaggggaagctggtgtatattcagaatcttgacatacggtttggagcttct 1359 |||||| || |||||| || ||||| ||||| ||||||||||||| ||||| |||| || Sbjct: 1181 gctgatgagcaggggacacttgtgtacattcaaaatcttgacatacagtttgcagctgct 1240 Query: 1360 gaaatagtggaacttatacgtgaggcgctacaactgtcttgtactgctaagcctattaac 1419 || |||| ||| ||||||||||| || ||||||| ||||| ||||||||||||||| Sbjct: 1241 gacatagaggagcttatacgtgatgctttacaactaaattgtatcgctaagcctattaac 1300 Query: 1420 cacccgacctacgatgatcctaacaatggaaaagcatatgttgtattcaaatctagaagt 1479 ||||| || || |||||||| ||||||||||||||||||| | |||||||| | | |||| Sbjct: 1301 cacccaacttatgatgatccaaacaatggaaaagcatatgctatattcaaaacaaaaagt 1360 Query: 1480 gctgctgatgaagctgttatgaaaattaattcaggcttggttgtgggtggaagacccctt 1539 || || || ||| || |||||||||||||||||||| || ||||||||||||||| Sbjct: 1361 gccgcagactctgctatttcaaaaattaattcaggcttggtggtcggtggaagacccctt 1420 Query: 1540 tactgcagcaaagggttactcaaggtcccaaaacc 1574 || ||||||||||| || || ||||| |||||||| Sbjct: 1421 tattgcagcaaaggattgcttaaggttccaaaacc 1455 Score = 139 bits (70), Expect = 5e-29 Identities = 100/110 (90%) Strand = Plus / Plus Query: 1629 aagacaacgagaagagcagaagaaggcagtgtcgacatcacattgttctcaacccaacac 1688 ||||||||||||||| |||||||||||||| || || || ||||||||||||||||| || Sbjct: 1507 aagacaacgagaagaacagaagaaggcagtttcaacctcgcattgttctcaacccaatac 1566 Query: 1689 aatagaatatgatctggccttggattggatgcttgtccgagaaaagcaag 1738 ||| || |||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 1567 aatggagtatgatttggccttggattggatgcttgtccgagcaaagcaag 1616 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 889 atggaggatgaaattcctgttgctgcagttcccctttcccagtcagt 935 ||||||||||||| ||| |||||||||||| ||||| ||| |||||| Sbjct: 803 atggaggatgaaagtccagttgctgcagtttcccttcccccgtcagt 849
>ref|NM_001050078.1| Oryza sativa (japonica cultivar-group) Os01g0610300 (Os01g0610300) mRNA, complete cds Length = 2162 Score = 442 bits (223), Expect = e-120 Identities = 451/527 (85%) Strand = Plus / Plus Query: 192 tgagctgcaagtggccattatcagaatgggtgaaagtaacgagaatatccagttttcatg 251 |||||| ||||| ||||||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 159 tgagctacaagttaccattatcagaatggatggtagtaatgagaatatccaattctcatg 218 Query: 252 gggaaataagagagcaaaaggtggtgccaagatggatacacagttctatggttccttcac 311 ||| || |||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct: 219 ggggaagaagagagcaaaaggtggtattaagatggatacacagttttatgactccttcac 278 Query: 312 ctttgacaatgtgaagtactcactgtatgactgtgtatatctttttaaaaatggagaacc 371 |||||||||||||||||||||||||||||| ||||||||||||||| | ||| || | Sbjct: 279 atttgacaatgtgaagtactcactgtatgacaatgtatatctttttaagagtggtgagtc 338 Query: 372 tgaaccatacattggaaagatagtaaagatatggcagcaaaatgaagctaagaaagtaaa 431 |||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 339 tgaaccttacattggaaagataataaagatatggcagcaaaatcaggctaagaaagtaaa 398 Query: 432 gattctttggtttttcaccccggatgagatcagaaattatttagaaggccccgtggtgga 491 ||||||||||||||| |||||||||||| |||| ||||| ||||| || |||| Sbjct: 399 gattctttggttttttctcccggatgagattcgaaaacatttaagtggccctgtaatgga 458 Query: 492 gaatgagatatttcttgcttctggtgatggcactggccttgccgatatcaacccactgga 551 || |||||||||||||||| |||||| ||| ||||||||| ||||||||||||||||| Sbjct: 459 aaaggagatatttcttgcttgtggtgaaggcgttggccttgctgatatcaacccactgga 518 Query: 552 atctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaatcgccagcc 611 | |||||| ||| |||||||| || ||||||||||||||||||| |||||||| || || Sbjct: 519 agctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaatcgtcaacc 578 Query: 612 taccccaaaggaacaaacggtcgctgattatatcttctataggttttttgatgttggaaa 671 | |||| | ||||| | | | ||||||||||||||||| ||||||||||||||| | Sbjct: 579 ttcccccagggaactagcaatggctgattatatcttctacaggttttttgatgttaacag 638 Query: 672 ctgcacactttctgagcaagtacctgagaaaattgtagggctggaag 718 |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 639 ttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 685 Score = 172 bits (87), Expect = 4e-39 Identities = 228/275 (82%) Strand = Plus / Plus Query: 1300 gctgataaggaggggaagctggtgtatattcagaatcttgacatacggtttggagcttct 1359 |||||| || |||||| || ||||| ||||| ||||||||||||| ||||| |||| || Sbjct: 1180 gctgatgagcaggggacacttgtgtacattcaaaatcttgacatacagtttgcagctgct 1239 Query: 1360 gaaatagtggaacttatacgtgaggcgctacaactgtcttgtactgctaagcctattaac 1419 || |||| ||| ||||||||||| || ||||||| ||||| ||||||||||||||| Sbjct: 1240 gacatagaggagcttatacgtgatgctttacaactaaattgtatcgctaagcctattaac 1299 Query: 1420 cacccgacctacgatgatcctaacaatggaaaagcatatgttgtattcaaatctagaagt 1479 ||||| || || |||||||| ||||||||||||||||||| | |||||||| | | |||| Sbjct: 1300 cacccaacttatgatgatccaaacaatggaaaagcatatgctatattcaaaacaaaaagt 1359 Query: 1480 gctgctgatgaagctgttatgaaaattaattcaggcttggttgtgggtggaagacccctt 1539 || || || ||| || |||||||||||||||||||| || ||||||||||||||| Sbjct: 1360 gccgcagactctgctatttcaaaaattaattcaggcttggtggtcggtggaagacccctt 1419 Query: 1540 tactgcagcaaagggttactcaaggtcccaaaacc 1574 || ||||||||||| || || ||||| |||||||| Sbjct: 1420 tattgcagcaaaggattgcttaaggttccaaaacc 1454 Score = 139 bits (70), Expect = 5e-29 Identities = 100/110 (90%) Strand = Plus / Plus Query: 1629 aagacaacgagaagagcagaagaaggcagtgtcgacatcacattgttctcaacccaacac 1688 ||||||||||||||| |||||||||||||| || || || ||||||||||||||||| || Sbjct: 1506 aagacaacgagaagaacagaagaaggcagtttcaacctcgcattgttctcaacccaatac 1565 Query: 1689 aatagaatatgatctggccttggattggatgcttgtccgagaaaagcaag 1738 ||| || |||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 1566 aatggagtatgatttggccttggattggatgcttgtccgagcaaagcaag 1615 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 889 atggaggatgaaattcctgttgctgcagttcccctttcccagtcagt 935 ||||||||||||| ||| |||||||||||| ||||| ||| |||||| Sbjct: 802 atggaggatgaaagtccagttgctgcagtttcccttcccccgtcagt 848
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 325 bits (164), Expect = 4e-85 Identities = 326/380 (85%) Strand = Plus / Plus Query: 171 aggcctatggtaagggcaaattgagctgcaagtggccattatcagaatgggtgaaagtaa 230 |||| |||||| || ||| | |||||| ||||| ||||||||||||||| || ||||| Sbjct: 24134852 aggcttatggtgagtgcacagtgagctacaagttaccattatcagaatggatggtagtaa 24134911 Query: 231 cgagaatatccagttttcatggggaaataagagagcaaaaggtggtgccaagatggatac 290 ||||||||||| || |||||||| || |||||||||||||||||| ||||||||||| Sbjct: 24134912 tgagaatatccaattctcatgggggaagaagagagcaaaaggtggtattaagatggatac 24134971 Query: 291 acagttctatggttccttcacctttgacaatgtgaagtactcactgtatgactgtgtata 350 |||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 24134972 acagttttatgactccttcacatttgacaatgtgaagtactcactgtatgacaatgtata 24135031 Query: 351 tctttttaaaaatggagaacctgaaccatacattggaaagatagtaaagatatggcagca 410 ||||||||| | ||| || ||||||| ||||||||||||||| |||||||||||||||| Sbjct: 24135032 tctttttaagagtggtgagtctgaaccttacattggaaagataataaagatatggcagca 24135091 Query: 411 aaatgaagctaagaaagtaaagattctttggtttttcaccccggatgagatcagaaatta 470 |||| | ||||||||||||||||||||||||||||| |||||||||||| |||| | Sbjct: 24135092 aaatcaggctaagaaagtaaagattctttggttttttctcccggatgagattcgaaaaca 24135151 Query: 471 tttagaaggccccgtggtggagaatgagatatttcttgcttctggtgatggcactggcct 530 |||| ||||| || |||| || |||||||||||||||| |||||| ||| |||||| Sbjct: 24135152 tttaagtggccctgtaatggaaaaggagatatttcttgcttgtggtgaaggcgttggcct 24135211 Query: 531 tgccgatatcaacccactgg 550 ||| |||||||||||||||| Sbjct: 24135212 tgctgatatcaacccactgg 24135231 Score = 123 bits (62), Expect = 3e-24 Identities = 143/170 (84%) Strand = Plus / Plus Query: 549 ggaatctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaatcgcca 608 |||| |||||| ||| |||||||| || ||||||||||||||||||| |||||||| || Sbjct: 24136016 ggaagctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaatcgtca 24136075 Query: 609 gcctaccccaaaggaacaaacggtcgctgattatatcttctataggttttttgatgttgg 668 ||| |||| | ||||| | | | ||||||||||||||||| ||||||||||||||| Sbjct: 24136076 accttcccccagggaactagcaatggctgattatatcttctacaggttttttgatgttaa 24136135 Query: 669 aaactgcacactttctgagcaagtacctgagaaaattgtagggctggaag 718 | |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 24136136 cagttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 24136185 Score = 115 bits (58), Expect = 8e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 1645 cagaagaaggcagtgtcgacatcacattgttctcaacccaacacaatagaatatgatctg 1704 |||||||||||||| || || || ||||||||||||||||| ||||| || |||||| || Sbjct: 24139669 cagaagaaggcagtttcaacctcgcattgttctcaacccaatacaatggagtatgatttg 24139728 Query: 1705 gccttggattggatgcttgtccgagaaaagcaag 1738 ||||||||||||||||||||||||| |||||||| Sbjct: 24139729 gccttggattggatgcttgtccgagcaaagcaag 24139762 Score = 58.0 bits (29), Expect = 2e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 1372 cttatacgtgaggcgctacaactgtcttgtactgctaagcctattaaccacccgacctac 1431 ||||||||||| || ||||||| ||||| |||||||||||||||||||| || || Sbjct: 24138809 cttatacgtgatgctttacaactaaattgtatcgctaagcctattaaccacccaacttat 24138868 Query: 1432 gatgatcctaacaatgg 1448 |||||||| |||||||| Sbjct: 24138869 gatgatccaaacaatgg 24138885 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 889 atggaggatgaaattcctgttgctgcagttcccctttcccagtcagt 935 ||||||||||||| ||| |||||||||||| ||||| ||| |||||| Sbjct: 24136415 atggaggatgaaagtccagttgctgcagtttcccttcccccgtcagt 24136461 Score = 48.1 bits (24), Expect = 0.15 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1501 aaaattaattcaggcttggttgtgggtggaag 1532 |||||||||||||||||||| || |||||||| Sbjct: 24139032 aaaattaattcaggcttggtggtcggtggaag 24139063 Score = 48.1 bits (24), Expect = 0.15 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1531 agacccctttactgcagcaaagggttactcaaggtcccaaaacc 1574 ||||||||||| ||||||||||| || || ||||| |||||||| Sbjct: 24139477 agacccctttattgcagcaaaggattgcttaaggttccaaaacc 24139520 Score = 46.1 bits (23), Expect = 0.59 Identities = 56/67 (83%) Strand = Plus / Plus Query: 1300 gctgataaggaggggaagctggtgtatattcagaatcttgacatacggtttggagcttct 1359 |||||| || |||||| || ||||| ||||| ||||||||||||| ||||| |||| || Sbjct: 24137760 gctgatgagcaggggacacttgtgtacattcaaaatcttgacatacagtttgcagctgct 24137819 Query: 1360 gaaatag 1366 || |||| Sbjct: 24137820 gacatag 24137826
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 325 bits (164), Expect = 4e-85 Identities = 326/380 (85%) Strand = Plus / Plus Query: 171 aggcctatggtaagggcaaattgagctgcaagtggccattatcagaatgggtgaaagtaa 230 |||| |||||| || ||| | |||||| ||||| ||||||||||||||| || ||||| Sbjct: 110674 aggcttatggtgagtgcacagtgagctacaagttaccattatcagaatggatggtagtaa 110733 Query: 231 cgagaatatccagttttcatggggaaataagagagcaaaaggtggtgccaagatggatac 290 ||||||||||| || |||||||| || |||||||||||||||||| ||||||||||| Sbjct: 110734 tgagaatatccaattctcatgggggaagaagagagcaaaaggtggtattaagatggatac 110793 Query: 291 acagttctatggttccttcacctttgacaatgtgaagtactcactgtatgactgtgtata 350 |||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 110794 acagttttatgactccttcacatttgacaatgtgaagtactcactgtatgacaatgtata 110853 Query: 351 tctttttaaaaatggagaacctgaaccatacattggaaagatagtaaagatatggcagca 410 ||||||||| | ||| || ||||||| ||||||||||||||| |||||||||||||||| Sbjct: 110854 tctttttaagagtggtgagtctgaaccttacattggaaagataataaagatatggcagca 110913 Query: 411 aaatgaagctaagaaagtaaagattctttggtttttcaccccggatgagatcagaaatta 470 |||| | ||||||||||||||||||||||||||||| |||||||||||| |||| | Sbjct: 110914 aaatcaggctaagaaagtaaagattctttggttttttctcccggatgagattcgaaaaca 110973 Query: 471 tttagaaggccccgtggtggagaatgagatatttcttgcttctggtgatggcactggcct 530 |||| ||||| || |||| || |||||||||||||||| |||||| ||| |||||| Sbjct: 110974 tttaagtggccctgtaatggaaaaggagatatttcttgcttgtggtgaaggcgttggcct 111033 Query: 531 tgccgatatcaacccactgg 550 ||| |||||||||||||||| Sbjct: 111034 tgctgatatcaacccactgg 111053 Score = 123 bits (62), Expect = 3e-24 Identities = 143/170 (84%) Strand = Plus / Plus Query: 549 ggaatctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaatcgcca 608 |||| |||||| ||| |||||||| || ||||||||||||||||||| |||||||| || Sbjct: 111838 ggaagctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaatcgtca 111897 Query: 609 gcctaccccaaaggaacaaacggtcgctgattatatcttctataggttttttgatgttgg 668 ||| |||| | ||||| | | | ||||||||||||||||| ||||||||||||||| Sbjct: 111898 accttcccccagggaactagcaatggctgattatatcttctacaggttttttgatgttaa 111957 Query: 669 aaactgcacactttctgagcaagtacctgagaaaattgtagggctggaag 718 | |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 111958 cagttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 112007 Score = 115 bits (58), Expect = 8e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 1645 cagaagaaggcagtgtcgacatcacattgttctcaacccaacacaatagaatatgatctg 1704 |||||||||||||| || || || ||||||||||||||||| ||||| || |||||| || Sbjct: 115491 cagaagaaggcagtttcaacctcgcattgttctcaacccaatacaatggagtatgatttg 115550 Query: 1705 gccttggattggatgcttgtccgagaaaagcaag 1738 ||||||||||||||||||||||||| |||||||| Sbjct: 115551 gccttggattggatgcttgtccgagcaaagcaag 115584 Score = 58.0 bits (29), Expect = 2e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 1372 cttatacgtgaggcgctacaactgtcttgtactgctaagcctattaaccacccgacctac 1431 ||||||||||| || ||||||| ||||| |||||||||||||||||||| || || Sbjct: 114631 cttatacgtgatgctttacaactaaattgtatcgctaagcctattaaccacccaacttat 114690 Query: 1432 gatgatcctaacaatgg 1448 |||||||| |||||||| Sbjct: 114691 gatgatccaaacaatgg 114707 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 889 atggaggatgaaattcctgttgctgcagttcccctttcccagtcagt 935 ||||||||||||| ||| |||||||||||| ||||| ||| |||||| Sbjct: 112237 atggaggatgaaagtccagttgctgcagtttcccttcccccgtcagt 112283 Score = 48.1 bits (24), Expect = 0.15 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1501 aaaattaattcaggcttggttgtgggtggaag 1532 |||||||||||||||||||| || |||||||| Sbjct: 114854 aaaattaattcaggcttggtggtcggtggaag 114885 Score = 48.1 bits (24), Expect = 0.15 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1531 agacccctttactgcagcaaagggttactcaaggtcccaaaacc 1574 ||||||||||| ||||||||||| || || ||||| |||||||| Sbjct: 115299 agacccctttattgcagcaaaggattgcttaaggttccaaaacc 115342 Score = 46.1 bits (23), Expect = 0.59 Identities = 56/67 (83%) Strand = Plus / Plus Query: 1300 gctgataaggaggggaagctggtgtatattcagaatcttgacatacggtttggagcttct 1359 |||||| || |||||| || ||||| ||||| ||||||||||||| ||||| |||| || Sbjct: 113582 gctgatgagcaggggacacttgtgtacattcaaaatcttgacatacagtttgcagctgct 113641 Query: 1360 gaaatag 1366 || |||| Sbjct: 113642 gacatag 113648
>gb|AY106082.1| Zea mays PCO136762 mRNA sequence Length = 832 Score = 113 bits (57), Expect = 3e-21 Identities = 147/177 (83%) Strand = Plus / Plus Query: 1398 ttgtactgctaagcctattaaccacccgacctacgatgatcctaacaatggaaaagcata 1457 ||||||||| ||||| ||||||||||| || || |||||||| |||||||| |||||||| Sbjct: 148 ttgtactgcgaagcccattaaccaccccacatatgatgatccaaacaatggcaaagcata 207 Query: 1458 tgttgtattcaaatctagaagtgctgctgatgaagctgttatgaaaattaattcaggctt 1517 || | |||||| | ||| | ||||||||||| || || ||||| ||||| || || Sbjct: 208 tgctatattcagaactaaagatgctgctgatgctgccatttcaaaaatcaattctggttt 267 Query: 1518 ggttgtgggtggaagacccctttactgcagcaaagggttactcaaggtcccaaaacc 1574 |||||| |||||||| ||||| |||||||||||||||||||| |||| |||||||| Sbjct: 268 ggttgttggtggaaggcccctgtactgcagcaaagggttacttgaggttccaaaacc 324 Score = 50.1 bits (25), Expect = 0.037 Identities = 79/97 (81%) Strand = Plus / Plus Query: 1642 gagcagaagaaggcagtgtcgacatcacattgttctcaacccaacacaatagaatatgat 1701 |||||||||||||| || | || || |||||||| || |||||||| || || || || Sbjct: 386 gagcagaagaaggctgtagcaacctcgcattgttcccagcccaacacgatcgagtacgac 445 Query: 1702 ctggccttggattggatgcttgtccgagaaaagcaag 1738 |||||||||| ||||||||| | || |||||||||| Sbjct: 446 ttggccttggactggatgcttcttcgggaaaagcaag 482
>emb|CR956430.2| M.truncatula DNA sequence from clone MTH2-49I19 on chromosome 3, complete sequence Length = 97738 Score = 58.0 bits (29), Expect = 2e-04 Identities = 41/45 (91%) Strand = Plus / Minus Query: 549 ggaatctattgctggtaaatgcacagttgtttgcatttcaaagga 593 |||| |||||||||| ||||||| |||||||||||||||||||| Sbjct: 39899 ggaagctattgctggaaaatgcaatgttgtttgcatttcaaagga 39855 Score = 42.1 bits (21), Expect = 9.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 1666 tcacattgttctcaacccaacacaatagaatatgatctggc 1706 |||||||||||||| ||||||| || ||||||||| |||| Sbjct: 29316 tcacattgttctcagcccaacaacattgaatatgatatggc 29276
>gb|AC127429.25| Medicago truncatula clone mth2-9o20, complete sequence Length = 130703 Score = 50.1 bits (25), Expect = 0.037 Identities = 40/45 (88%) Strand = Plus / Plus Query: 549 ggaatctattgctggtaaatgcacagttgtttgcatttcaaagga 593 ||||||||||||||| ||||||| ||||||||||||| ||||| Sbjct: 128740 ggaatctattgctggaaaatgcaacattgtttgcatttctaagga 128784
>gb|AC092966.6| Homo sapiens 3 BAC RP11-143P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138589 Score = 46.1 bits (23), Expect = 0.59 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1509 ttcaggcttggttgtgggtggaa 1531 ||||||||||||||||||||||| Sbjct: 41171 ttcaggcttggttgtgggtggaa 41193
>gb|AC113043.7| Mus musculus chromosome 1, clone RP23-243C7, complete sequence Length = 191557 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1055 cacagagtacacagaaagtttt 1076 |||||||||||||||||||||| Sbjct: 110782 cacagagtacacagaaagtttt 110803
>gb|AC091854.3| Homo sapiens chromosome 5 clone CTD-2293C22, complete sequence Length = 109538 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1449 aaaagcatatgttgtattcaaa 1470 |||||||||||||||||||||| Sbjct: 45349 aaaagcatatgttgtattcaaa 45328
>gb|AC015890.9| Mus musculus chromosome 10, clone RP21-244O21, complete sequence Length = 160840 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1242 gcaggctgacagaagcaaatgg 1263 |||||||||||||||||||||| Sbjct: 140677 gcaggctgacagaagcaaatgg 140656
>gb|AC025913.11| Mus musculus 10 BAC RP23-287L13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228124 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1242 gcaggctgacagaagcaaatgg 1263 |||||||||||||||||||||| Sbjct: 161481 gcaggctgacagaagcaaatgg 161460
>gb|AC012302.5|AC012302 Mus musculus chromosome 10, clone RP21-247L16, complete sequence Length = 130427 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1242 gcaggctgacagaagcaaatgg 1263 |||||||||||||||||||||| Sbjct: 22721 gcaggctgacagaagcaaatgg 22700
>gb|DQ119104.1| Aeromonas hydrophila FlaA (flaA), FlaB (flaB), FlaG (flaG), FlaH (flaH), FlaJ (flaJ), Maf-1 (maf-1), Maf-2 (maf-2), NeuB (neuB), FlmD (flmD), NeuA-like (neuA), FlmH (flmH), and 3-oxoacyl-carrier-protein reductase genes, complete cds; and unknown genes Length = 15311 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2211 catctgctgccgctgctgcatg 2232 |||||||||||||||||||||| Sbjct: 12578 catctgctgccgctgctgcatg 12557
>gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complete sequence Length = 231000 Score = 44.1 bits (22), Expect = 2.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1177 cagaatatggcctcagttcctg 1198 |||||||||||||||||||||| Sbjct: 128971 cagaatatggcctcagttcctg 128992
>ref|NR_003247.1| Mus musculus CEA-related cell adhesion molecule 1 (Ceacam-ps1) on chromosome 7 Length = 908 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 935 tggccatttttcttcccccat 955 ||||||||||||||||||||| Sbjct: 829 tggccatttttcttcccccat 809
>dbj|AB251919.1| Bacteriophage phiK38-1 DNA, region around attP and integrase Length = 2400 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 cgcccccttcccccgcttctc 143 ||||||||||||||||||||| Sbjct: 352 cgcccccttcccccgcttctc 332
>gb|CP000312.1| Clostridium perfringens SM101, complete genome Length = 2897393 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 638 attatatcttctataggtttt 658 ||||||||||||||||||||| Sbjct: 1712942 attatatcttctataggtttt 1712962
>gb|AC187107.3| Gallus gallus BAC clone CH261-144B12 from chromosome z, complete sequence Length = 191067 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 917 ttcccctttcccagtcagtgg 937 ||||||||||||||||||||| Sbjct: 101638 ttcccctttcccagtcagtgg 101618
>ref|XM_001111621.1| PREDICTED: Macaca mulatta eukaryotic translation initiation factor 4E nuclear import factor 1, transcript variant 7 (EIF4ENIF1), mRNA Length = 3913 Score = 42.1 bits (21), Expect = 9.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 975 agctcaggttgctactgttcctctt 999 ||||||||||||||||| ||||||| Sbjct: 85 agctcaggttgctactgctcctctt 109
>gb|AC146541.2| Gasterosteus aculeatus clone CH213-33P7, complete sequence Length = 209797 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1462 gtattcaaatctagaagtgct 1482 ||||||||||||||||||||| Sbjct: 205405 gtattcaaatctagaagtgct 205385
>dbj|AB159669.1| Nemalionopsis tortuosa chloroplast tufA gene for elongation factor TU, partial cds Length = 1125 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 982 gttgctactgttcctcttccc 1002 ||||||||||||||||||||| Sbjct: 693 gttgctactgttcctcttccc 673
>gb|AC123901.2| Homo sapiens chromosome 3 clone RP11-952G4, complete sequence Length = 217409 Score = 42.1 bits (21), Expect = 9.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2094 tgggaagtttctcatgacatatctt 2118 ||||||||||||| ||||||||||| Sbjct: 140675 tgggaagtttctcttgacatatctt 140651
>gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, complete sequence Length = 154272 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1084 aagatgccttcaaagaagttg 1104 ||||||||||||||||||||| Sbjct: 153880 aagatgccttcaaagaagttg 153900
>emb|AL691523.6| Human DNA sequence from clone RP13-531C17 on chromosome 1 Contains the 5' end of the gene for glycine- glutamate- thienylcyclohexylpiperidine-binding protein (KIAA0562), the DFFB gene for DNA fragmentation factor 40kDa beta polypeptide (caspase-activated DNase), the 3' end of the gene for a novel protein and three CpG islands, complete sequence Length = 69982 Score = 42.1 bits (21), Expect = 9.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1605 catcagtaatcagaaaatgaaccca 1629 |||||||||||||||| |||||||| Sbjct: 49518 catcagtaatcagaaattgaaccca 49494
>gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosome 17, complete sequence Length = 189293 Score = 42.1 bits (21), Expect = 9.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 959 tcaaagaggaggataaagctcaggt 983 |||||||| |||||||||||||||| Sbjct: 73521 tcaaagagcaggataaagctcaggt 73545
>gb|AC008859.5| Homo sapiens chromosome 5 clone CTD-2183N12, complete sequence Length = 120491 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1084 aagatgccttcaaagaagttg 1104 ||||||||||||||||||||| Sbjct: 117141 aagatgccttcaaagaagttg 117121
>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence Length = 170033 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1089 gccttcaaagaagttgaaatt 1109 ||||||||||||||||||||| Sbjct: 138970 gccttcaaagaagttgaaatt 138950
>emb|AL645564.6| Mouse DNA sequence from clone RP23-35N22 on chromosome 11 Contains part of a novel gene and two CpG islands, complete sequence Length = 205101 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1694 aatatgatctggccttggatt 1714 ||||||||||||||||||||| Sbjct: 131007 aatatgatctggccttggatt 131027
>gb|AC021646.35| Homo sapiens 12 BAC RP11-511B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165089 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1488 tgaagctgttatgaaaattaa 1508 ||||||||||||||||||||| Sbjct: 104372 tgaagctgttatgaaaattaa 104392
>gb|AC135413.43| Medicago truncatula clone mth2-16n19, complete sequence Length = 92216 Score = 42.1 bits (21), Expect = 9.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1666 tcacattgttctcaacccaacacaatagaatatgatctggc 1706 |||||||||||||| ||||||| || ||||||||| |||| Sbjct: 7217 tcacattgttctcagcccaacaacattgaatatgatatggc 7257
>emb|BX001003.6| Zebrafish DNA sequence from clone CH211-215E7, complete sequence Length = 212403 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 tgcacagttgtttgcatttca 588 ||||||||||||||||||||| Sbjct: 151797 tgcacagttgtttgcatttca 151777
>gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete sequence Length = 198005 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 ttaaaaatggagaacctgaac 376 ||||||||||||||||||||| Sbjct: 158293 ttaaaaatggagaacctgaac 158313
>emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in linkage group 18, complete sequence Length = 182116 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 tgcacagttgtttgcatttca 588 ||||||||||||||||||||| Sbjct: 126495 tgcacagttgtttgcatttca 126515
>emb|AL732626.8| Mouse DNA sequence from clone RP23-191F22 on chromosome 4, complete sequence Length = 151688 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1052 gtacacagagtacacagaaag 1072 ||||||||||||||||||||| Sbjct: 37524 gtacacagagtacacagaaag 37544
>emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chromosome 11, complete sequence Length = 210163 Score = 42.1 bits (21), Expect = 9.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 aaagtaaagattctttggtttttca 448 |||| |||||||||||||||||||| Sbjct: 37121 aaaggaaagattctttggtttttca 37145
>emb|AL732459.5| Mouse DNA sequence from clone RP23-115J4 on chromosome X, complete sequence Length = 201897 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 gcttctggtgatggcactggc 528 ||||||||||||||||||||| Sbjct: 48397 gcttctggtgatggcactggc 48417
>gb|M94581.1|SMOBNHE Trout sodium-hydrogen exchange protein beta mRNA, complete cds Length = 2490 Score = 42.1 bits (21), Expect = 9.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1351 ggagcttctgaaatagtggaa 1371 ||||||||||||||||||||| Sbjct: 2408 ggagcttctgaaatagtggaa 2388 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 455,624,137 Number of extensions: 24748645 Number of successful extensions: 134803 Number of sequences better than 10.0: 38 Number of HSP's gapped: 134791 Number of HSP's successfully gapped: 65 Length of query: 2387 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2364 Effective length of database: 18,503,978,556 Effective search space: 43743405306384 Effective search space used: 43743405306384 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)