ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP002962.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 46 0.17
2dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 46 0.17
3ref|XM_001022061.1| Tetrahymena thermophila SB210 chromo domain ... 44 0.66
4emb|AL357134.13| Human DNA sequence from clone RP4-654C18 on chr... 44 0.66
5gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete s... 44 0.66
6gb|AF162221.1|AF162221 Xestia c-nigrum granulovirus genome, comp... 44 0.66
7dbj|AB257440.1| Schoenoplectus juncoides ALS1 gene for acetolact... 42 2.6
8gb|AC183983.2| Pan troglodytes BAC clone CH251-515C21 from chrom... 42 2.6
9gb|AC169511.1| Mus musculus BAC clone RP23-81P24 from chromosome... 42 2.6
10gb|DQ176436.1| Anabaena siamensis dinitrogenase alpha subunit (n... 42 2.6
11gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome... 42 2.6
12ref|XM_816683.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.6
13emb|AL161800.10| Human DNA sequence from clone RP11-318C17 on ch... 42 2.6
14emb|AL136979.16| Human DNA sequence from clone RP11-130C19 on ch... 42 2.6
15emb|BX927299.6| Zebrafish DNA sequence from clone DKEY-146H10 in... 42 2.6
16gb|AC129883.3| Ornithorhynchus anatinus clone OA_Bb-305F19, comp... 42 2.6
17gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 2.6
18emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on ch... 42 2.6
19gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, comple... 42 2.6
20gb|AC144798.4| Mus musculus BAC clone RP24-364A24 from 14, compl... 42 2.6
21emb|CT025639.13| Mouse DNA sequence from clone RP23-233I11 on ch... 42 2.6

>dbj|AP002962.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-652L8, complete
             sequence
          Length = 160222
 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 55    caccatcatcctcttctcccattctcttcct 85
             |||| ||| ||||||||||||||||||||||
Sbjct: 17296 caccctcaccctcttctcccattctcttcct 17266



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>dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-728F11, complete
              sequences
          Length = 184926

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 55     caccatcatcctcttctcccattctcttcct 85
              |||| ||| ||||||||||||||||||||||
Sbjct: 146729 caccctcaccctcttctcccattctcttcct 146699



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>ref|XM_001022061.1| Tetrahymena thermophila SB210 chromo domain protein (TTHERM_00565610)
            mRNA, complete cds
          Length = 5151

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 50   ccgctcaccatcatcctcttct 71
            ||||||||||||||||||||||
Sbjct: 3345 ccgctcaccatcatcctcttct 3366



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>emb|AL357134.13| Human DNA sequence from clone RP4-654C18 on chromosome 1 Contains the
             5' end of the TCEA3 gene for transcription elongation
             factor A (SII) 3, a single-stranded DNA binding protein
             (SSBP1) pseudogene, the 3' end of the gene for
             up-regulated in liver cancer 1 (UPLC1) (FLJ34972,
             FLJ20199, FLJ20246) and a CpG island, complete sequence
          Length = 66464

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 63    tcctcttctcccattctcttcc 84
             ||||||||||||||||||||||
Sbjct: 48709 tcctcttctcccattctcttcc 48688



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>gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete sequence
          Length = 120437

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 538    atgaatgtaatatatcatttat 559
              ||||||||||||||||||||||
Sbjct: 107726 atgaatgtaatatatcatttat 107705



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>gb|AF162221.1|AF162221 Xestia c-nigrum granulovirus genome, complete sequence
          Length = 178733

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 96    cttgctctgctgtttcttcttg 117
             ||||||||||||||||||||||
Sbjct: 74119 cttgctctgctgtttcttcttg 74140



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>dbj|AB257440.1| Schoenoplectus juncoides ALS1 gene for acetolactate synthase,
           complete cds
          Length = 3339

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 609 tccttttgtttttatctttct 629
           |||||||||||||||||||||
Sbjct: 597 tccttttgtttttatctttct 617



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>gb|AC183983.2| Pan troglodytes BAC clone CH251-515C21 from chromosome 9, complete
             sequence
          Length = 154108

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    actcttgctctgctgtttctt 113
             |||||||||||||||||||||
Sbjct: 17380 actcttgctctgctgtttctt 17360



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>gb|AC169511.1| Mus musculus BAC clone RP23-81P24 from chromosome 14, complete sequence
          Length = 252587

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 58    catcatcctcttctcccattctctt 82
             ||||||||||| |||||||||||||
Sbjct: 34700 catcatcctctgctcccattctctt 34724



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>gb|DQ176436.1| Anabaena siamensis dinitrogenase alpha subunit (nifD) and
            dinitrogenase beta subunit (nifK) genes, partial cds
          Length = 2474

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 96   cttgctctgctgtttcttctt 116
            |||||||||||||||||||||
Sbjct: 1489 cttgctctgctgtttcttctt 1509



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>gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome 14, complete sequence
          Length = 159361

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 611   cttttgtttttatctttcttg 631
             |||||||||||||||||||||
Sbjct: 69656 cttttgtttttatctttcttg 69676



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>ref|XM_816683.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506559.250) partial mRNA
          Length = 4680

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   tgctctgctgtttcttcttgc 118
            |||||||||||||||||||||
Sbjct: 3722 tgctctgctgtttcttcttgc 3702



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>emb|AL161800.10| Human DNA sequence from clone RP11-318C17 on chromosome 20 Contains
            the 3' end fo the C20orf133 gene and the 3' end of a
            novel gene, complete sequence
          Length = 43741

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 66   tcttctcccattctcttcctg 86
            |||||||||||||||||||||
Sbjct: 6471 tcttctcccattctcttcctg 6491



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>emb|AL136979.16| Human DNA sequence from clone RP11-130C19 on chromosome 9p24.1-24.3
              Contains a translation initiation factor (SUI1) pseudogene,
              a novel gene and the gene for kidney ankyrin
              repeat-containing protein (KANK, KIAA0172), complete
              sequence
          Length = 197099

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     actcttgctctgctgtttctt 113
              |||||||||||||||||||||
Sbjct: 137706 actcttgctctgctgtttctt 137726



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>emb|BX927299.6| Zebrafish DNA sequence from clone DKEY-146H10 in linkage group 19,
             complete sequence
          Length = 70460

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 541   aatgtaatatatcatttatat 561
             |||||||||||||||||||||
Sbjct: 47020 aatgtaatatatcatttatat 47040



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>gb|AC129883.3| Ornithorhynchus anatinus clone OA_Bb-305F19, complete sequence
          Length = 181157

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    tcctcttctcccattctcttc 83
             |||||||||||||||||||||
Sbjct: 52104 tcctcttctcccattctcttc 52084



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>gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OABb-520P24, complete
              sequence
          Length = 142317

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     tcctcttctcccattctcttc 83
              |||||||||||||||||||||
Sbjct: 136615 tcctcttctcccattctcttc 136635



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>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
              sequence
          Length = 167407

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 637    ttcccgatggaaaacaatatgtgag 661
              |||| ||||||||||||||||||||
Sbjct: 157899 ttccagatggaaaacaatatgtgag 157923



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>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence
          Length = 140465

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     tcctcttctcccattctcttc 83
              |||||||||||||||||||||
Sbjct: 135127 tcctcttctcccattctcttc 135147



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>gb|AC144798.4| Mus musculus BAC clone RP24-364A24 from 14, complete sequence
          Length = 159766

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 58   catcatcctcttctcccattctctt 82
            ||||||||||| |||||||||||||
Sbjct: 1517 catcatcctctgctcccattctctt 1493



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>emb|CT025639.13| Mouse DNA sequence from clone RP23-233I11 on chromosome 13, complete
              sequence
          Length = 219226

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     tcctcttctcccattctcttc 83
              |||||||||||||||||||||
Sbjct: 155277 tcctcttctcccattctcttc 155257


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 125,357,394
Number of extensions: 7462197
Number of successful extensions: 158383
Number of sequences better than 10.0: 21
Number of HSP's gapped: 158383
Number of HSP's successfully gapped: 21
Length of query: 692
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 670
Effective length of database: 18,508,616,841
Effective search space: 12400773283470
Effective search space used: 12400773283470
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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