ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf45g01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001067479.1| Oryza sativa (japonica cultivar-group) Os08g0135800 (Os08g0135800) mRNA, complete cds Length = 3686 Score = 396 bits (200), Expect = e-106 Identities = 708/871 (81%), Gaps = 26/871 (2%) Strand = Plus / Plus Query: 677 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 736 |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| ||| Sbjct: 703 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 762 Query: 737 ggatggggcacagctgttagccgtggttactcttctagggtgtcgtc---tggtccagat 793 || ||||| ||| || ||||||||||||| ||||||||| | || || |||||||||| Sbjct: 763 gggtggggtacaactcttagccgtggttattcttctaggatatcatcatctggtccagat 822 Query: 794 gcatggaagcagcgcactcgcagtcca---tctccaagaggaggtgcttggaacaggtca 850 || |||||| | | |||||||||| ||||||||||| ||| |||||||||||| Sbjct: 823 gcgtggaaga---gaagtcgcagtccactatctccaagaggtggt---tggaacaggtca 876 Query: 851 cgtaggaacggaagtgactccagaag------caggagtagagagcgaggtagagggaga 904 || |||||| |||| || ||||| |||||| | || |||||||||||| ||| Sbjct: 877 cgcaggaacagaagccgttctagaagtagaagcaggagcatagggcgaggtagaggtaga 936 Query: 905 agcagaagtcgaagtcggagtccttactt---tgaccgtggttctgattggagggctgag 961 |||||||| |||| | |||||||| || ||||||||| ||||| ||||||| |||| Sbjct: 937 agcagaagcagaagcagaagtccttatttcagtgaccgtggatctgaatggagggttgag 996 Query: 962 agaggcagaatatctggaggaccttctttgctctgcagagattttacagctggtagatgc 1021 ||| ||||| ||||||||||||| || | | ||| || |||||| ||||||||||||| Sbjct: 997 agaagcagatcatctggaggacctgctcttccctgtagggattttgtagctggtagatgc 1056 Query: 1022 agaagaggcttgcattgcaggtttcctcatgaagatggtgggcgaaggcagtttgatgag 1081 |||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct: 1057 agaagaggctcaaattgcaggttccctcatgaagatggtgtgcgcaggcagtttgatgag 1116 Query: 1082 ccttatcccgcagactcgagggaaaggtatggccatcagaacaaggatttcctggatcca 1141 | |||||| | ||| || ||||||| |||||| |||||||| | ||| ||| |||||||| Sbjct: 1117 cattatcctgtagattcaagggaaaagtatgggcatcagaatagggacttcatggatcca 1176 Query: 1142 cgagaaccagatgactatgtacggagcaggcaacctcgaggt---cattttgatgaaggt 1198 ||||||| |||||||||| || ||| |||| |||||||||| |||| ||||||||| Sbjct: 1177 cgagaacaagatgactatttaaggaataggccacctcgaggtggccattatgatgaagga 1236 Query: 1199 acttgggaaagatctgaaccccgaagagattacaggccttctgat-caatgccatgagtt 1257 |||||||||||||||||||| ||||| || || || || | ||| | ||||||||| || Sbjct: 1237 acttgggaaagatctgaacctcgaagggagtatcggtctac-gatgccatgccatgattt 1295 Query: 1258 tgtcaaaggaaggtgcagcagaggtgcaagttgcagatatgttcatgatgagtccgcttc 1317 |||||||||||| ||||| || ||||| | |||| |||||||||||||||| ||| | | Sbjct: 1296 tgtcaaaggaagatgcagtaggggtgcgaattgccgatatgttcatgatgattccacccc 1355 Query: 1318 tcatgttggatggagagatgatgctagggaaacggctcatgtgagaggtggtcctgattt 1377 ||||| ||||||||||||||| | ||| || | ||| || ||| |||| ||||||| Sbjct: 1356 tcatggtggatggagagatgaggttagagataatgctattggtagaagtggccctgattc 1415 Query: 1378 atcctatgggaataggacagagcaccgtagagaaccaaaaaggccctgtaaattttttgc 1437 ||| |||||||| ||||| |||||||||||| | |||| ||||| ||||||||||| Sbjct: 1416 atcatatgggaacaggactgagcaccgtagaacaaataaaaacccctgcaaattttttgc 1475 Query: 1438 tgaaggtcgctgccgtcgtggtgagacttgtccatatctccatgaggatgctccccaaag 1497 | | ||| | ||||||||||| | | ||| ||||||||||| ||||| ||| |||| || Sbjct: 1476 taacggtggatgccgtcgtggccaaaattgcccatatctccacgaggaagcttcccagag 1535 Query: 1498 tcaaatgggcccaggtgcatctgatgagcct 1528 |||||||| | |||||| ||||||||||| Sbjct: 1536 ccaaatgggactgggtgcacctgatgagcct 1566 Score = 174 bits (88), Expect = 1e-39 Identities = 310/384 (80%) Strand = Plus / Plus Query: 1605 gttctcatattttatccagagatgacagggaaaaccctgattctcagcatactgccagaa 1664 |||||||| |||| || ||||||||||| |||||||||| | ||||| ||||| ||||| Sbjct: 1640 gttctcatgttttgtcaagagatgacagagaaaaccctgttcctcagggtactggcagaa 1699 Query: 1665 gtgatactggatatgggtacaaaaaccggcaattggaagatgctggaagggatcagtacc 1724 |||| || |||||| | ||||||||||||| | ||||||||||||| |||||||| Sbjct: 1700 atgattctcgatatgagaacaaaaaccggcattccaaagatgctggaagtagtcagtacc 1759 Query: 1725 agataattcctcaagaggattttggttcacaagggcgaaataaacctgaaatggctgctc 1784 ||||| | ||||| || |||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 1760 agatattccctcaggatgattttggttcagtagggcaaaacaaacctgaaatagctgctt 1819 Query: 1785 caaaacagcaacagtttttaagtcctatccaaacaagtggggatagcatgaacaatgaca 1844 || ||| || |||||| || | || |||||||| | || ||||| |||| ||||| Sbjct: 1820 cacaactgccacagttcataccttctgtccaaacaggcacagagagcataaacattgaca 1879 Query: 1845 aggtatctggcatggatggtctgggtgcatctgctaccactggcaatttgagtatgcaaa 1904 ||||||||| ||||| ||||| | ||| | ||| ||| |||||||||||||||||||| Sbjct: 1880 aggtatctgacatgggtggtcagagtggacctggaaccgttggcaatttgagtatgcaaa 1939 Query: 1905 ctgggagacatgctcctaatcttttagatgggcaaagcttgagccaaatagcacagagcc 1964 |||| ||| || |||||||||||| ||||| | |||| |||||| |||| |||||| Sbjct: 1940 tcgggatgcattctgctaatcttttaggagggcataacttgggccaaaaagcagagagcc 1999 Query: 1965 aagatgcagttcctcaaacttctg 1988 |||||||| || |||||| ||||| Sbjct: 2000 aagatgcaatttctcaaatttctg 2023 Score = 149 bits (75), Expect = 8e-32 Identities = 207/251 (82%) Strand = Plus / Plus Query: 3066 aggagtccaaggcactgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccc 3125 |||| |||||||| ||||||||||||| || || || || ||||||||||| || || | Sbjct: 2945 aggattccaaggcgttgaagatgtttaagcttgcactggctgactttgtgaaggatgcac 3004 Query: 3126 tcaaacctacgtggaaagagggccagctgaccagagaggttcacaagaccatagtgaaga 3185 | || || || ||||||||||| || ||| |||||||||||| || || || ||||||| Sbjct: 3005 ttaagcccacctggaaagagggtcaaatgagcagagaggttcataaaacaattgtgaaga 3064 Query: 3186 aggtcgtcgacaaagtcacgagcacggttgagaacatccctccaacaaaagagaagatcg 3245 |||| ||||||||||| |||| ||| ||||| || | |||| ||||||||||||||| | Sbjct: 3065 aggttgtcgacaaagttacgaccacagttgaaaatactcctcaaacaaaagagaagattg 3124 Query: 3246 atgtctacatgtcctactcgaaagaaaaactcagcaaacttgtacaggcatatgtgggca 3305 || | |||||||||||||| | |||||| || | |||||| || ||||||||||| |||| Sbjct: 3125 atatttacatgtcctactccagagaaaagctaaacaaactcgtccaggcatatgttggca 3184 Query: 3306 agtatgtcaag 3316 |||||| |||| Sbjct: 3185 agtatgccaag 3195 Score = 73.8 bits (37), Expect = 4e-09 Identities = 64/73 (87%) Strand = Plus / Plus Query: 2391 tgcaaaacacacatagtttccagcccgttgctccaaatatgcaagctcatagtcaagcct 2450 ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||| Sbjct: 2390 tgcaaaacacacataatttccagcctgttgctccaaatgagcaaactcagagtcaaacct 2449 Query: 2451 tgcaggggctatc 2463 |||| ||| |||| Sbjct: 2450 tgcaagggttatc 2462 Score = 58.0 bits (29), Expect = 2e-04 Identities = 50/57 (87%) Strand = Plus / Plus Query: 369 ctcctgatattgttgagatcagtgaagatgactctcctcctaagaatacagatgatc 425 |||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||| Sbjct: 377 ctcctgatatagtggagatcagtgaagatgagtctcttcctatgaatatggatgatc 433 Score = 54.0 bits (27), Expect = 0.004 Identities = 75/91 (82%) Strand = Plus / Plus Query: 2109 acttctcattacatccgagcaggcaagatcaatttgtagcttctcaggcaactgcaaata 2168 |||| ||||||||||| | ||||| || || |||| || | |||| |||||| |||||| Sbjct: 2105 acttttcattacatccaaataggcaggaccagtttgcagttcctcatgcaactacaaata 2164 Query: 2169 attcggctcctagcatgcagaatcagccagt 2199 | || |||||||||||||||| |||||||| Sbjct: 2165 actctgctcctagcatgcagagccagccagt 2195 Score = 54.0 bits (27), Expect = 0.004 Identities = 27/27 (100%) Strand = Plus / Plus Query: 2504 aacacacataatttccagcctgttgct 2530 ||||||||||||||||||||||||||| Sbjct: 2395 aacacacataatttccagcctgttgct 2421
>dbj|AK100455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091E18, full insert sequence Length = 3689 Score = 396 bits (200), Expect = e-106 Identities = 708/871 (81%), Gaps = 26/871 (2%) Strand = Plus / Plus Query: 677 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 736 |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| ||| Sbjct: 706 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 765 Query: 737 ggatggggcacagctgttagccgtggttactcttctagggtgtcgtc---tggtccagat 793 || ||||| ||| || ||||||||||||| ||||||||| | || || |||||||||| Sbjct: 766 gggtggggtacaactcttagccgtggttattcttctaggatatcatcatctggtccagat 825 Query: 794 gcatggaagcagcgcactcgcagtcca---tctccaagaggaggtgcttggaacaggtca 850 || |||||| | | |||||||||| ||||||||||| ||| |||||||||||| Sbjct: 826 gcgtggaaga---gaagtcgcagtccactatctccaagaggtggt---tggaacaggtca 879 Query: 851 cgtaggaacggaagtgactccagaag------caggagtagagagcgaggtagagggaga 904 || |||||| |||| || ||||| |||||| | || |||||||||||| ||| Sbjct: 880 cgcaggaacagaagccgttctagaagtagaagcaggagcatagggcgaggtagaggtaga 939 Query: 905 agcagaagtcgaagtcggagtccttactt---tgaccgtggttctgattggagggctgag 961 |||||||| |||| | |||||||| || ||||||||| ||||| ||||||| |||| Sbjct: 940 agcagaagcagaagcagaagtccttatttcagtgaccgtggatctgaatggagggttgag 999 Query: 962 agaggcagaatatctggaggaccttctttgctctgcagagattttacagctggtagatgc 1021 ||| ||||| ||||||||||||| || | | ||| || |||||| ||||||||||||| Sbjct: 1000 agaagcagatcatctggaggacctgctcttccctgtagggattttgtagctggtagatgc 1059 Query: 1022 agaagaggcttgcattgcaggtttcctcatgaagatggtgggcgaaggcagtttgatgag 1081 |||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct: 1060 agaagaggctcaaattgcaggttccctcatgaagatggtgtgcgcaggcagtttgatgag 1119 Query: 1082 ccttatcccgcagactcgagggaaaggtatggccatcagaacaaggatttcctggatcca 1141 | |||||| | ||| || ||||||| |||||| |||||||| | ||| ||| |||||||| Sbjct: 1120 cattatcctgtagattcaagggaaaagtatgggcatcagaatagggacttcatggatcca 1179 Query: 1142 cgagaaccagatgactatgtacggagcaggcaacctcgaggt---cattttgatgaaggt 1198 ||||||| |||||||||| || ||| |||| |||||||||| |||| ||||||||| Sbjct: 1180 cgagaacaagatgactatttaaggaataggccacctcgaggtggccattatgatgaagga 1239 Query: 1199 acttgggaaagatctgaaccccgaagagattacaggccttctgat-caatgccatgagtt 1257 |||||||||||||||||||| ||||| || || || || | ||| | ||||||||| || Sbjct: 1240 acttgggaaagatctgaacctcgaagggagtatcggtctac-gatgccatgccatgattt 1298 Query: 1258 tgtcaaaggaaggtgcagcagaggtgcaagttgcagatatgttcatgatgagtccgcttc 1317 |||||||||||| ||||| || ||||| | |||| |||||||||||||||| ||| | | Sbjct: 1299 tgtcaaaggaagatgcagtaggggtgcgaattgccgatatgttcatgatgattccacccc 1358 Query: 1318 tcatgttggatggagagatgatgctagggaaacggctcatgtgagaggtggtcctgattt 1377 ||||| ||||||||||||||| | ||| || | ||| || ||| |||| ||||||| Sbjct: 1359 tcatggtggatggagagatgaggttagagataatgctattggtagaagtggccctgattc 1418 Query: 1378 atcctatgggaataggacagagcaccgtagagaaccaaaaaggccctgtaaattttttgc 1437 ||| |||||||| ||||| |||||||||||| | |||| ||||| ||||||||||| Sbjct: 1419 atcatatgggaacaggactgagcaccgtagaacaaataaaaacccctgcaaattttttgc 1478 Query: 1438 tgaaggtcgctgccgtcgtggtgagacttgtccatatctccatgaggatgctccccaaag 1497 | | ||| | ||||||||||| | | ||| ||||||||||| ||||| ||| |||| || Sbjct: 1479 taacggtggatgccgtcgtggccaaaattgcccatatctccacgaggaagcttcccagag 1538 Query: 1498 tcaaatgggcccaggtgcatctgatgagcct 1528 |||||||| | |||||| ||||||||||| Sbjct: 1539 ccaaatgggactgggtgcacctgatgagcct 1569 Score = 167 bits (84), Expect = 4e-37 Identities = 309/384 (80%) Strand = Plus / Plus Query: 1605 gttctcatattttatccagagatgacagggaaaaccctgattctcagcatactgccagaa 1664 |||||||| |||| || ||||||| ||| |||||||||| | ||||| ||||| ||||| Sbjct: 1643 gttctcatgttttgtcaagagatggcagagaaaaccctgttcctcagggtactggcagaa 1702 Query: 1665 gtgatactggatatgggtacaaaaaccggcaattggaagatgctggaagggatcagtacc 1724 |||| || |||||| | ||||||||||||| | ||||||||||||| |||||||| Sbjct: 1703 atgattctcgatatgagaacaaaaaccggcattccaaagatgctggaagtagtcagtacc 1762 Query: 1725 agataattcctcaagaggattttggttcacaagggcgaaataaacctgaaatggctgctc 1784 ||||| | ||||| || |||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 1763 agatattccctcaggatgattttggttcagtagggcaaaacaaacctgaaatagctgctt 1822 Query: 1785 caaaacagcaacagtttttaagtcctatccaaacaagtggggatagcatgaacaatgaca 1844 || ||| || |||||| || | || |||||||| | || ||||| |||| ||||| Sbjct: 1823 cacaactgccacagttcataccttctgtccaaacaggcacagagagcataaacattgaca 1882 Query: 1845 aggtatctggcatggatggtctgggtgcatctgctaccactggcaatttgagtatgcaaa 1904 ||||||||| ||||| ||||| | ||| | ||| ||| |||||||||||||||||||| Sbjct: 1883 aggtatctgacatgggtggtcagagtggacctggaaccgttggcaatttgagtatgcaaa 1942 Query: 1905 ctgggagacatgctcctaatcttttagatgggcaaagcttgagccaaatagcacagagcc 1964 |||| ||| || |||||||||||| ||||| | |||| |||||| |||| |||||| Sbjct: 1943 tcgggatgcattctgctaatcttttaggagggcataacttgggccaaaaagcagagagcc 2002 Query: 1965 aagatgcagttcctcaaacttctg 1988 |||||||| || |||||| ||||| Sbjct: 2003 aagatgcaatttctcaaatttctg 2026 Score = 149 bits (75), Expect = 8e-32 Identities = 207/251 (82%) Strand = Plus / Plus Query: 3066 aggagtccaaggcactgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccc 3125 |||| |||||||| ||||||||||||| || || || || ||||||||||| || || | Sbjct: 2948 aggattccaaggcgttgaagatgtttaagcttgcactggctgactttgtgaaggatgcac 3007 Query: 3126 tcaaacctacgtggaaagagggccagctgaccagagaggttcacaagaccatagtgaaga 3185 | || || || ||||||||||| || ||| |||||||||||| || || || ||||||| Sbjct: 3008 ttaagcccacctggaaagagggtcaaatgagcagagaggttcataaaacaattgtgaaga 3067 Query: 3186 aggtcgtcgacaaagtcacgagcacggttgagaacatccctccaacaaaagagaagatcg 3245 |||| ||||||||||| |||| ||| ||||| || | |||| ||||||||||||||| | Sbjct: 3068 aggttgtcgacaaagttacgaccacagttgaaaatactcctcaaacaaaagagaagattg 3127 Query: 3246 atgtctacatgtcctactcgaaagaaaaactcagcaaacttgtacaggcatatgtgggca 3305 || | |||||||||||||| | |||||| || | |||||| || ||||||||||| |||| Sbjct: 3128 atatttacatgtcctactccagagaaaagctaaacaaactcgtccaggcatatgttggca 3187 Query: 3306 agtatgtcaag 3316 |||||| |||| Sbjct: 3188 agtatgccaag 3198 Score = 73.8 bits (37), Expect = 4e-09 Identities = 64/73 (87%) Strand = Plus / Plus Query: 2391 tgcaaaacacacatagtttccagcccgttgctccaaatatgcaagctcatagtcaagcct 2450 ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||| Sbjct: 2393 tgcaaaacacacataatttccagcctgttgctccaaatgagcaaactcagagtcaaacct 2452 Query: 2451 tgcaggggctatc 2463 |||| ||| |||| Sbjct: 2453 tgcaagggttatc 2465 Score = 58.0 bits (29), Expect = 2e-04 Identities = 50/57 (87%) Strand = Plus / Plus Query: 369 ctcctgatattgttgagatcagtgaagatgactctcctcctaagaatacagatgatc 425 |||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||| Sbjct: 380 ctcctgatatagtggagatcagtgaagatgagtctcttcctatgaatatggatgatc 436 Score = 54.0 bits (27), Expect = 0.004 Identities = 75/91 (82%) Strand = Plus / Plus Query: 2109 acttctcattacatccgagcaggcaagatcaatttgtagcttctcaggcaactgcaaata 2168 |||| ||||||||||| | ||||| || || |||| || | |||| |||||| |||||| Sbjct: 2108 acttttcattacatccaaataggcaggaccagtttgcagttcctcatgcaactacaaata 2167 Query: 2169 attcggctcctagcatgcagaatcagccagt 2199 | || |||||||||||||||| |||||||| Sbjct: 2168 actctgctcctagcatgcagagccagccagt 2198 Score = 54.0 bits (27), Expect = 0.004 Identities = 27/27 (100%) Strand = Plus / Plus Query: 2504 aacacacataatttccagcctgttgct 2530 ||||||||||||||||||||||||||| Sbjct: 2398 aacacacataatttccagcctgttgct 2424
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 349 bits (176), Expect = 5e-92 Identities = 545/664 (82%), Gaps = 8/664 (1%) Strand = Plus / Plus Query: 872 agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 931 ||||||||||| | || |||||||||||| ||||||||||| |||| | |||||||| Sbjct: 2017414 agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 2017473 Query: 932 tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 988 || ||||||||| ||||| ||||||| ||||||| ||||| ||||||||||||| || Sbjct: 2017474 ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 2017533 Query: 989 ttgctctgcagagattttacagctggtagatgcagaagaggcttgcattgcaggtttcct 1048 | | ||| || |||||| ||||||||||||||||||||||| |||||||||| ||| Sbjct: 2017534 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttccct 2017593 Query: 1049 catgaagatggtgggcgaaggcagtttgatgagccttatcccgcagactcgagggaaagg 1108 ||||||||||||| ||| |||||||||||||||| |||||| | ||| || ||||||| | Sbjct: 2017594 catgaagatggtgtgcgcaggcagtttgatgagcattatcctgtagattcaagggaaaag 2017653 Query: 1109 tatggccatcagaacaaggatttcctggatccacgagaaccagatgactatgtacggagc 1168 ||||| |||||||| | ||| ||| ||||||||||||||| |||||||||| || ||| Sbjct: 2017654 tatgggcatcagaatagggacttcatggatccacgagaacaagatgactatttaaggaat 2017713 Query: 1169 aggcaacctcgaggt---cattttgatgaaggtacttgggaaagatctgaaccccgaaga 1225 |||| |||||||||| |||| ||||||||| |||||||||||||||||||| ||||| Sbjct: 2017714 aggccacctcgaggtggccattatgatgaaggaacttgggaaagatctgaacctcgaagg 2017773 Query: 1226 gattacaggccttctgat-caatgccatgagtttgtcaaaggaaggtgcagcagaggtgc 1284 || || || || | ||| | ||||||||| |||||||||||||| ||||| || ||||| Sbjct: 2017774 gagtatcggtctac-gatgccatgccatgattttgtcaaaggaagatgcagtaggggtgc 2017832 Query: 1285 aagttgcagatatgttcatgatgagtccgcttctcatgttggatggagagatgatgctag 1344 | |||| |||||||||||||||| ||| | |||||| ||||||||||||||| | ||| Sbjct: 2017833 gaattgccgatatgttcatgatgattccacccctcatggtggatggagagatgaggttag 2017892 Query: 1345 ggaaacggctcatgtgagaggtggtcctgatttatcctatgggaataggacagagcaccg 1404 || | ||| || ||| |||| ||||||| ||| |||||||| ||||| |||||||| Sbjct: 2017893 agataatgctattggtagaagtggccctgattcatcatatgggaacaggactgagcaccg 2017952 Query: 1405 tagagaaccaaaaaggccctgtaaattttttgctgaaggtcgctgccgtcgtggtgagac 1464 |||| | |||| ||||| |||||||||||| | ||| | ||||||||||| | | Sbjct: 2017953 tagaacaaataaaaacccctgcaaattttttgctaacggtggatgccgtcgtggccaaaa 2018012 Query: 1465 ttgtccatatctccatgaggatgctccccaaagtcaaatgggcccaggtgcatctgatga 1524 ||| ||||||||||| ||||| ||| |||| || |||||||| | |||||| ||||||| Sbjct: 2018013 ttgcccatatctccacgaggaagcttcccagagccaaatgggactgggtgcacctgatga 2018072 Query: 1525 gcct 1528 |||| Sbjct: 2018073 gcct 2018076 Score = 174 bits (88), Expect = 1e-39 Identities = 310/384 (80%) Strand = Plus / Plus Query: 1605 gttctcatattttatccagagatgacagggaaaaccctgattctcagcatactgccagaa 1664 |||||||| |||| || ||||||||||| |||||||||| | ||||| ||||| ||||| Sbjct: 2018150 gttctcatgttttgtcaagagatgacagagaaaaccctgttcctcagggtactggcagaa 2018209 Query: 1665 gtgatactggatatgggtacaaaaaccggcaattggaagatgctggaagggatcagtacc 1724 |||| || |||||| | ||||||||||||| | ||||||||||||| |||||||| Sbjct: 2018210 atgattctcgatatgagaacaaaaaccggcattccaaagatgctggaagtagtcagtacc 2018269 Query: 1725 agataattcctcaagaggattttggttcacaagggcgaaataaacctgaaatggctgctc 1784 ||||| | ||||| || |||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 2018270 agatattccctcaggatgattttggttcagtagggcaaaacaaacctgaaatagctgctt 2018329 Query: 1785 caaaacagcaacagtttttaagtcctatccaaacaagtggggatagcatgaacaatgaca 1844 || ||| || |||||| || | || |||||||| | || ||||| |||| ||||| Sbjct: 2018330 cacaactgccacagttcataccttctgtccaaacaggcacagagagcataaacattgaca 2018389 Query: 1845 aggtatctggcatggatggtctgggtgcatctgctaccactggcaatttgagtatgcaaa 1904 ||||||||| ||||| ||||| | ||| | ||| ||| |||||||||||||||||||| Sbjct: 2018390 aggtatctgacatgggtggtcagagtggacctggaaccgttggcaatttgagtatgcaaa 2018449 Query: 1905 ctgggagacatgctcctaatcttttagatgggcaaagcttgagccaaatagcacagagcc 1964 |||| ||| || |||||||||||| ||||| | |||| |||||| |||| |||||| Sbjct: 2018450 tcgggatgcattctgctaatcttttaggagggcataacttgggccaaaaagcagagagcc 2018509 Query: 1965 aagatgcagttcctcaaacttctg 1988 |||||||| || |||||| ||||| Sbjct: 2018510 aagatgcaatttctcaaatttctg 2018533 Score = 119 bits (60), Expect = 8e-23 Identities = 171/208 (82%) Strand = Plus / Plus Query: 3066 aggagtccaaggcactgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccc 3125 |||| |||||||| ||||||||||||| || || || || ||||||||||| || || | Sbjct: 2019455 aggattccaaggcgttgaagatgtttaagcttgcactggctgactttgtgaaggatgcac 2019514 Query: 3126 tcaaacctacgtggaaagagggccagctgaccagagaggttcacaagaccatagtgaaga 3185 | || || || ||||||||||| || ||| |||||||||||| || || || ||||||| Sbjct: 2019515 ttaagcccacctggaaagagggtcaaatgagcagagaggttcataaaacaattgtgaaga 2019574 Query: 3186 aggtcgtcgacaaagtcacgagcacggttgagaacatccctccaacaaaagagaagatcg 3245 |||| ||||||||||| |||| ||| ||||| || | |||| ||||||||||||||| | Sbjct: 2019575 aggttgtcgacaaagttacgaccacagttgaaaatactcctcaaacaaaagagaagattg 2019634 Query: 3246 atgtctacatgtcctactcgaaagaaaa 3273 || | |||||||||||||| | |||||| Sbjct: 2019635 atatttacatgtcctactccagagaaaa 2019662 Score = 109 bits (55), Expect = 7e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 677 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 736 |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| ||| Sbjct: 2016923 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 2016982 Query: 737 ggatggggcacagctgttagccgtggttactcttctagg 775 || ||||| ||| || ||||||||||||| ||||||||| Sbjct: 2016983 gggtggggtacaactcttagccgtggttattcttctagg 2017021 Score = 73.8 bits (37), Expect = 4e-09 Identities = 64/73 (87%) Strand = Plus / Plus Query: 2391 tgcaaaacacacatagtttccagcccgttgctccaaatatgcaagctcatagtcaagcct 2450 ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||| Sbjct: 2018900 tgcaaaacacacataatttccagcctgttgctccaaatgagcaaactcagagtcaaacct 2018959 Query: 2451 tgcaggggctatc 2463 |||| ||| |||| Sbjct: 2018960 tgcaagggttatc 2018972 Score = 58.0 bits (29), Expect = 2e-04 Identities = 50/57 (87%) Strand = Plus / Plus Query: 369 ctcctgatattgttgagatcagtgaagatgactctcctcctaagaatacagatgatc 425 |||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||| Sbjct: 2016597 ctcctgatatagtggagatcagtgaagatgagtctcttcctatgaatatggatgatc 2016653 Score = 54.0 bits (27), Expect = 0.004 Identities = 75/91 (82%) Strand = Plus / Plus Query: 2109 acttctcattacatccgagcaggcaagatcaatttgtagcttctcaggcaactgcaaata 2168 |||| ||||||||||| | ||||| || || |||| || | |||| |||||| |||||| Sbjct: 2018615 acttttcattacatccaaataggcaggaccagtttgcagttcctcatgcaactacaaata 2018674 Query: 2169 attcggctcctagcatgcagaatcagccagt 2199 | || |||||||||||||||| |||||||| Sbjct: 2018675 actctgctcctagcatgcagagccagccagt 2018705 Score = 54.0 bits (27), Expect = 0.004 Identities = 27/27 (100%) Strand = Plus / Plus Query: 2504 aacacacataatttccagcctgttgct 2530 ||||||||||||||||||||||||||| Sbjct: 2018905 aacacacataatttccagcctgttgct 2018931 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2383 tcagagcatgcaaaacacacat 2404 |||||||||||||||||||||| Sbjct: 26937374 tcagagcatgcaaaacacacat 26937395
>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1613_G04 Length = 135357 Score = 349 bits (176), Expect = 5e-92 Identities = 545/664 (82%), Gaps = 8/664 (1%) Strand = Plus / Plus Query: 872 agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 931 ||||||||||| | || |||||||||||| ||||||||||| |||| | |||||||| Sbjct: 10944 agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 11003 Query: 932 tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 988 || ||||||||| ||||| ||||||| ||||||| ||||| ||||||||||||| || Sbjct: 11004 ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 11063 Query: 989 ttgctctgcagagattttacagctggtagatgcagaagaggcttgcattgcaggtttcct 1048 | | ||| || |||||| ||||||||||||||||||||||| |||||||||| ||| Sbjct: 11064 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttccct 11123 Query: 1049 catgaagatggtgggcgaaggcagtttgatgagccttatcccgcagactcgagggaaagg 1108 ||||||||||||| ||| |||||||||||||||| |||||| | ||| || ||||||| | Sbjct: 11124 catgaagatggtgtgcgcaggcagtttgatgagcattatcctgtagattcaagggaaaag 11183 Query: 1109 tatggccatcagaacaaggatttcctggatccacgagaaccagatgactatgtacggagc 1168 ||||| |||||||| | ||| ||| ||||||||||||||| |||||||||| || ||| Sbjct: 11184 tatgggcatcagaatagggacttcatggatccacgagaacaagatgactatttaaggaat 11243 Query: 1169 aggcaacctcgaggt---cattttgatgaaggtacttgggaaagatctgaaccccgaaga 1225 |||| |||||||||| |||| ||||||||| |||||||||||||||||||| ||||| Sbjct: 11244 aggccacctcgaggtggccattatgatgaaggaacttgggaaagatctgaacctcgaagg 11303 Query: 1226 gattacaggccttctgat-caatgccatgagtttgtcaaaggaaggtgcagcagaggtgc 1284 || || || || | ||| | ||||||||| |||||||||||||| ||||| || ||||| Sbjct: 11304 gagtatcggtctac-gatgccatgccatgattttgtcaaaggaagatgcagtaggggtgc 11362 Query: 1285 aagttgcagatatgttcatgatgagtccgcttctcatgttggatggagagatgatgctag 1344 | |||| |||||||||||||||| ||| | |||||| ||||||||||||||| | ||| Sbjct: 11363 gaattgccgatatgttcatgatgattccacccctcatggtggatggagagatgaggttag 11422 Query: 1345 ggaaacggctcatgtgagaggtggtcctgatttatcctatgggaataggacagagcaccg 1404 || | ||| || ||| |||| ||||||| ||| |||||||| ||||| |||||||| Sbjct: 11423 agataatgctattggtagaagtggccctgattcatcatatgggaacaggactgagcaccg 11482 Query: 1405 tagagaaccaaaaaggccctgtaaattttttgctgaaggtcgctgccgtcgtggtgagac 1464 |||| | |||| ||||| |||||||||||| | ||| | ||||||||||| | | Sbjct: 11483 tagaacaaataaaaacccctgcaaattttttgctaacggtggatgccgtcgtggccaaaa 11542 Query: 1465 ttgtccatatctccatgaggatgctccccaaagtcaaatgggcccaggtgcatctgatga 1524 ||| ||||||||||| ||||| ||| |||| || |||||||| | |||||| ||||||| Sbjct: 11543 ttgcccatatctccacgaggaagcttcccagagccaaatgggactgggtgcacctgatga 11602 Query: 1525 gcct 1528 |||| Sbjct: 11603 gcct 11606 Score = 174 bits (88), Expect = 1e-39 Identities = 310/384 (80%) Strand = Plus / Plus Query: 1605 gttctcatattttatccagagatgacagggaaaaccctgattctcagcatactgccagaa 1664 |||||||| |||| || ||||||||||| |||||||||| | ||||| ||||| ||||| Sbjct: 11680 gttctcatgttttgtcaagagatgacagagaaaaccctgttcctcagggtactggcagaa 11739 Query: 1665 gtgatactggatatgggtacaaaaaccggcaattggaagatgctggaagggatcagtacc 1724 |||| || |||||| | ||||||||||||| | ||||||||||||| |||||||| Sbjct: 11740 atgattctcgatatgagaacaaaaaccggcattccaaagatgctggaagtagtcagtacc 11799 Query: 1725 agataattcctcaagaggattttggttcacaagggcgaaataaacctgaaatggctgctc 1784 ||||| | ||||| || |||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 11800 agatattccctcaggatgattttggttcagtagggcaaaacaaacctgaaatagctgctt 11859 Query: 1785 caaaacagcaacagtttttaagtcctatccaaacaagtggggatagcatgaacaatgaca 1844 || ||| || |||||| || | || |||||||| | || ||||| |||| ||||| Sbjct: 11860 cacaactgccacagttcataccttctgtccaaacaggcacagagagcataaacattgaca 11919 Query: 1845 aggtatctggcatggatggtctgggtgcatctgctaccactggcaatttgagtatgcaaa 1904 ||||||||| ||||| ||||| | ||| | ||| ||| |||||||||||||||||||| Sbjct: 11920 aggtatctgacatgggtggtcagagtggacctggaaccgttggcaatttgagtatgcaaa 11979 Query: 1905 ctgggagacatgctcctaatcttttagatgggcaaagcttgagccaaatagcacagagcc 1964 |||| ||| || |||||||||||| ||||| | |||| |||||| |||| |||||| Sbjct: 11980 tcgggatgcattctgctaatcttttaggagggcataacttgggccaaaaagcagagagcc 12039 Query: 1965 aagatgcagttcctcaaacttctg 1988 |||||||| || |||||| ||||| Sbjct: 12040 aagatgcaatttctcaaatttctg 12063 Score = 119 bits (60), Expect = 8e-23 Identities = 171/208 (82%) Strand = Plus / Plus Query: 3066 aggagtccaaggcactgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccc 3125 |||| |||||||| ||||||||||||| || || || || ||||||||||| || || | Sbjct: 12985 aggattccaaggcgttgaagatgtttaagcttgcactggctgactttgtgaaggatgcac 13044 Query: 3126 tcaaacctacgtggaaagagggccagctgaccagagaggttcacaagaccatagtgaaga 3185 | || || || ||||||||||| || ||| |||||||||||| || || || ||||||| Sbjct: 13045 ttaagcccacctggaaagagggtcaaatgagcagagaggttcataaaacaattgtgaaga 13104 Query: 3186 aggtcgtcgacaaagtcacgagcacggttgagaacatccctccaacaaaagagaagatcg 3245 |||| ||||||||||| |||| ||| ||||| || | |||| ||||||||||||||| | Sbjct: 13105 aggttgtcgacaaagttacgaccacagttgaaaatactcctcaaacaaaagagaagattg 13164 Query: 3246 atgtctacatgtcctactcgaaagaaaa 3273 || | |||||||||||||| | |||||| Sbjct: 13165 atatttacatgtcctactccagagaaaa 13192 Score = 109 bits (55), Expect = 7e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 677 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 736 |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| ||| Sbjct: 10453 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 10512 Query: 737 ggatggggcacagctgttagccgtggttactcttctagg 775 || ||||| ||| || ||||||||||||| ||||||||| Sbjct: 10513 gggtggggtacaactcttagccgtggttattcttctagg 10551 Score = 73.8 bits (37), Expect = 4e-09 Identities = 64/73 (87%) Strand = Plus / Plus Query: 2391 tgcaaaacacacatagtttccagcccgttgctccaaatatgcaagctcatagtcaagcct 2450 ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||| Sbjct: 12430 tgcaaaacacacataatttccagcctgttgctccaaatgagcaaactcagagtcaaacct 12489 Query: 2451 tgcaggggctatc 2463 |||| ||| |||| Sbjct: 12490 tgcaagggttatc 12502 Score = 58.0 bits (29), Expect = 2e-04 Identities = 50/57 (87%) Strand = Plus / Plus Query: 369 ctcctgatattgttgagatcagtgaagatgactctcctcctaagaatacagatgatc 425 |||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||| Sbjct: 10127 ctcctgatatagtggagatcagtgaagatgagtctcttcctatgaatatggatgatc 10183 Score = 54.0 bits (27), Expect = 0.004 Identities = 75/91 (82%) Strand = Plus / Plus Query: 2109 acttctcattacatccgagcaggcaagatcaatttgtagcttctcaggcaactgcaaata 2168 |||| ||||||||||| | ||||| || || |||| || | |||| |||||| |||||| Sbjct: 12145 acttttcattacatccaaataggcaggaccagtttgcagttcctcatgcaactacaaata 12204 Query: 2169 attcggctcctagcatgcagaatcagccagt 2199 | || |||||||||||||||| |||||||| Sbjct: 12205 actctgctcctagcatgcagagccagccagt 12235 Score = 54.0 bits (27), Expect = 0.004 Identities = 27/27 (100%) Strand = Plus / Plus Query: 2504 aacacacataatttccagcctgttgct 2530 ||||||||||||||||||||||||||| Sbjct: 12435 aacacacataatttccagcctgttgct 12461
>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0680F05 Length = 185495 Score = 349 bits (176), Expect = 5e-92 Identities = 545/664 (82%), Gaps = 8/664 (1%) Strand = Plus / Plus Query: 872 agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 931 ||||||||||| | || |||||||||||| ||||||||||| |||| | |||||||| Sbjct: 142612 agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 142671 Query: 932 tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 988 || ||||||||| ||||| ||||||| ||||||| ||||| ||||||||||||| || Sbjct: 142672 ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 142731 Query: 989 ttgctctgcagagattttacagctggtagatgcagaagaggcttgcattgcaggtttcct 1048 | | ||| || |||||| ||||||||||||||||||||||| |||||||||| ||| Sbjct: 142732 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttccct 142791 Query: 1049 catgaagatggtgggcgaaggcagtttgatgagccttatcccgcagactcgagggaaagg 1108 ||||||||||||| ||| |||||||||||||||| |||||| | ||| || ||||||| | Sbjct: 142792 catgaagatggtgtgcgcaggcagtttgatgagcattatcctgtagattcaagggaaaag 142851 Query: 1109 tatggccatcagaacaaggatttcctggatccacgagaaccagatgactatgtacggagc 1168 ||||| |||||||| | ||| ||| ||||||||||||||| |||||||||| || ||| Sbjct: 142852 tatgggcatcagaatagggacttcatggatccacgagaacaagatgactatttaaggaat 142911 Query: 1169 aggcaacctcgaggt---cattttgatgaaggtacttgggaaagatctgaaccccgaaga 1225 |||| |||||||||| |||| ||||||||| |||||||||||||||||||| ||||| Sbjct: 142912 aggccacctcgaggtggccattatgatgaaggaacttgggaaagatctgaacctcgaagg 142971 Query: 1226 gattacaggccttctgat-caatgccatgagtttgtcaaaggaaggtgcagcagaggtgc 1284 || || || || | ||| | ||||||||| |||||||||||||| ||||| || ||||| Sbjct: 142972 gagtatcggtctac-gatgccatgccatgattttgtcaaaggaagatgcagtaggggtgc 143030 Query: 1285 aagttgcagatatgttcatgatgagtccgcttctcatgttggatggagagatgatgctag 1344 | |||| |||||||||||||||| ||| | |||||| ||||||||||||||| | ||| Sbjct: 143031 gaattgccgatatgttcatgatgattccacccctcatggtggatggagagatgaggttag 143090 Query: 1345 ggaaacggctcatgtgagaggtggtcctgatttatcctatgggaataggacagagcaccg 1404 || | ||| || ||| |||| ||||||| ||| |||||||| ||||| |||||||| Sbjct: 143091 agataatgctattggtagaagtggccctgattcatcatatgggaacaggactgagcaccg 143150 Query: 1405 tagagaaccaaaaaggccctgtaaattttttgctgaaggtcgctgccgtcgtggtgagac 1464 |||| | |||| ||||| |||||||||||| | ||| | ||||||||||| | | Sbjct: 143151 tagaacaaataaaaacccctgcaaattttttgctaacggtggatgccgtcgtggccaaaa 143210 Query: 1465 ttgtccatatctccatgaggatgctccccaaagtcaaatgggcccaggtgcatctgatga 1524 ||| ||||||||||| ||||| ||| |||| || |||||||| | |||||| ||||||| Sbjct: 143211 ttgcccatatctccacgaggaagcttcccagagccaaatgggactgggtgcacctgatga 143270 Query: 1525 gcct 1528 |||| Sbjct: 143271 gcct 143274 Score = 174 bits (88), Expect = 1e-39 Identities = 310/384 (80%) Strand = Plus / Plus Query: 1605 gttctcatattttatccagagatgacagggaaaaccctgattctcagcatactgccagaa 1664 |||||||| |||| || ||||||||||| |||||||||| | ||||| ||||| ||||| Sbjct: 143348 gttctcatgttttgtcaagagatgacagagaaaaccctgttcctcagggtactggcagaa 143407 Query: 1665 gtgatactggatatgggtacaaaaaccggcaattggaagatgctggaagggatcagtacc 1724 |||| || |||||| | ||||||||||||| | ||||||||||||| |||||||| Sbjct: 143408 atgattctcgatatgagaacaaaaaccggcattccaaagatgctggaagtagtcagtacc 143467 Query: 1725 agataattcctcaagaggattttggttcacaagggcgaaataaacctgaaatggctgctc 1784 ||||| | ||||| || |||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 143468 agatattccctcaggatgattttggttcagtagggcaaaacaaacctgaaatagctgctt 143527 Query: 1785 caaaacagcaacagtttttaagtcctatccaaacaagtggggatagcatgaacaatgaca 1844 || ||| || |||||| || | || |||||||| | || ||||| |||| ||||| Sbjct: 143528 cacaactgccacagttcataccttctgtccaaacaggcacagagagcataaacattgaca 143587 Query: 1845 aggtatctggcatggatggtctgggtgcatctgctaccactggcaatttgagtatgcaaa 1904 ||||||||| ||||| ||||| | ||| | ||| ||| |||||||||||||||||||| Sbjct: 143588 aggtatctgacatgggtggtcagagtggacctggaaccgttggcaatttgagtatgcaaa 143647 Query: 1905 ctgggagacatgctcctaatcttttagatgggcaaagcttgagccaaatagcacagagcc 1964 |||| ||| || |||||||||||| ||||| | |||| |||||| |||| |||||| Sbjct: 143648 tcgggatgcattctgctaatcttttaggagggcataacttgggccaaaaagcagagagcc 143707 Query: 1965 aagatgcagttcctcaaacttctg 1988 |||||||| || |||||| ||||| Sbjct: 143708 aagatgcaatttctcaaatttctg 143731 Score = 119 bits (60), Expect = 8e-23 Identities = 171/208 (82%) Strand = Plus / Plus Query: 3066 aggagtccaaggcactgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccc 3125 |||| |||||||| ||||||||||||| || || || || ||||||||||| || || | Sbjct: 144653 aggattccaaggcgttgaagatgtttaagcttgcactggctgactttgtgaaggatgcac 144712 Query: 3126 tcaaacctacgtggaaagagggccagctgaccagagaggttcacaagaccatagtgaaga 3185 | || || || ||||||||||| || ||| |||||||||||| || || || ||||||| Sbjct: 144713 ttaagcccacctggaaagagggtcaaatgagcagagaggttcataaaacaattgtgaaga 144772 Query: 3186 aggtcgtcgacaaagtcacgagcacggttgagaacatccctccaacaaaagagaagatcg 3245 |||| ||||||||||| |||| ||| ||||| || | |||| ||||||||||||||| | Sbjct: 144773 aggttgtcgacaaagttacgaccacagttgaaaatactcctcaaacaaaagagaagattg 144832 Query: 3246 atgtctacatgtcctactcgaaagaaaa 3273 || | |||||||||||||| | |||||| Sbjct: 144833 atatttacatgtcctactccagagaaaa 144860 Score = 109 bits (55), Expect = 7e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 677 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 736 |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| ||| Sbjct: 142121 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 142180 Query: 737 ggatggggcacagctgttagccgtggttactcttctagg 775 || ||||| ||| || ||||||||||||| ||||||||| Sbjct: 142181 gggtggggtacaactcttagccgtggttattcttctagg 142219 Score = 73.8 bits (37), Expect = 4e-09 Identities = 64/73 (87%) Strand = Plus / Plus Query: 2391 tgcaaaacacacatagtttccagcccgttgctccaaatatgcaagctcatagtcaagcct 2450 ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||| Sbjct: 144098 tgcaaaacacacataatttccagcctgttgctccaaatgagcaaactcagagtcaaacct 144157 Query: 2451 tgcaggggctatc 2463 |||| ||| |||| Sbjct: 144158 tgcaagggttatc 144170 Score = 58.0 bits (29), Expect = 2e-04 Identities = 50/57 (87%) Strand = Plus / Plus Query: 369 ctcctgatattgttgagatcagtgaagatgactctcctcctaagaatacagatgatc 425 |||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||| Sbjct: 141795 ctcctgatatagtggagatcagtgaagatgagtctcttcctatgaatatggatgatc 141851 Score = 54.0 bits (27), Expect = 0.004 Identities = 75/91 (82%) Strand = Plus / Plus Query: 2109 acttctcattacatccgagcaggcaagatcaatttgtagcttctcaggcaactgcaaata 2168 |||| ||||||||||| | ||||| || || |||| || | |||| |||||| |||||| Sbjct: 143813 acttttcattacatccaaataggcaggaccagtttgcagttcctcatgcaactacaaata 143872 Query: 2169 attcggctcctagcatgcagaatcagccagt 2199 | || |||||||||||||||| |||||||| Sbjct: 143873 actctgctcctagcatgcagagccagccagt 143903 Score = 54.0 bits (27), Expect = 0.004 Identities = 27/27 (100%) Strand = Plus / Plus Query: 2504 aacacacataatttccagcctgttgct 2530 ||||||||||||||||||||||||||| Sbjct: 144103 aacacacataatttccagcctgttgct 144129
>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence Length = 144792 Score = 256 bits (129), Expect = 5e-64 Identities = 563/705 (79%), Gaps = 2/705 (0%) Strand = Plus / Minus Query: 934 tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttctttgct 993 ||||||||| ||||| ||||||| |||||||||||||| ||||||||||||| | || Sbjct: 80374 tgaccgtggatctgagtggagggttgagagaggcagaacatctggaggacctgttcggcc 80315 Query: 994 ctgcagagattttacagctggtagatgcagaagaggcttgcattgcaggtttcctcatga 1053 ||| || |||||| |||||||| ||||||||||||| |||||||||| | |||||| Sbjct: 80314 ctgtagggattttgtggctggtaggtgcagaagaggctcaaattgcaggttccttcatga 80255 Query: 1054 agatggtgggcgaaggcagtttgatgagccttatcccgcagactcgagggaaaggtatgg 1113 ||||||||||| |||| |||||||| | ||||| || ||| | |||||||||||||| Sbjct: 80254 agatggtgggcacaggccatttgatgatcactatcctgctgacccaagggaaaggtatgg 80195 Query: 1114 ccatcagaacaaggatttcctggatccacgagaaccagatgactatgtacggagcaggca 1173 |||||| |||||| || ||||| || ||| |||| |||||||| | ||||| ||||| Sbjct: 80194 ttatcagagcaaggagtttatggatacaagaggaccaaatgactatttgcggagtaggca 80135 Query: 1174 acctcgaggtcattttgatgaaggtacttgggaaagatctgaaccccgaagagattacag 1233 | |||||| || || |||||| | ||||||| ||||||||||| ||||| |||||| | Sbjct: 80134 atctcgagatcgttatgatgataggccttgggagagatctgaacctcgaagggattaccg 80075 Query: 1234 gccttctgatcaatgccatgagtttgtcaaaggaaggtgcagcagaggtgcaagttgcag 1293 | | |||| |||||| | | |||| |||||| | |||| |||||||| ||||||| Sbjct: 80074 gtatcctgaacaatgctttaattttgccaaagggaaatgcatgagaggtgctagttgcat 80015 Query: 1294 atatgttcatgatgagtccgcttctcatgttggatggagagatgatgctagggaaacggc 1353 || || ||| | | || |||||||||| | ||||||||||||| ||||||||| || Sbjct: 80014 atttgcgcatagtaattctgcttctcatggtagatggagagatgagactagggaaagtgc 79955 Query: 1354 tcatgtgagaggtggtcctgatttatcctatgggaataggacagagcaccgtagag-aac 1412 |||| ||| ||| ||||||| |||||||||||||||||| ||||||||||| | || Sbjct: 79954 ccatgatagatttggccctgattcatcctatgggaataggactgagcaccgtagggtaaa 79895 Query: 1413 caaaaaggccctgtaaattttttgctgaaggtcgctgccgtcgtggtgagacttgtccat 1472 |||||| || ||||| ||||||||||||||| | || || |||||||| | |||| ||| Sbjct: 79894 caaaaac-ccttgtaagttttttgctgaaggttgttgtcgccgtggtgaaaattgttcat 79836 Query: 1473 atctccatgaggatgctccccaaagtcaaatgggcccaggtgcatctgatgagcctccaa 1532 ||||||||||||| |||||||| ||||| || || ||||| |||||||| || | Sbjct: 79835 atctccatgaggaagctccccatagtcagataggagtgagtgcacctgatgaggctttga 79776 Query: 1533 aatacagtggtgggcgtacaccaagaggaaattattcgaattggggcgaagaaactaatg 1592 | ||||||| ||||| | || |||||||||| ||||| || ||||| ||| ||| ||||| Sbjct: 79775 attacagtgatgggcatgcagcaagaggaaactattcaaactggggtgaacaaaataatg 79716 Query: 1593 gtacacatgcaggttctcatattttatccagagatgacagggaaa 1637 | |||||| ||||| ||||||||||| ||||||||||||| Sbjct: 79715 ctgtgcatgcaacctctcagattttatccagggatgacagggaaa 79671 Score = 129 bits (65), Expect = 8e-26 Identities = 155/185 (83%) Strand = Plus / Minus Query: 3080 ctgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccctcaaacctacgtgg 3139 ||||||||||| || | |||||||| ||||| ||||| || || || || || |||||| Sbjct: 78300 ctgaagatgttcaaggttgcgctcgcggacttcgtgaaggaggcgctgaagccgacgtgg 78241 Query: 3140 aaagagggccagctgaccagagaggttcacaagaccatagtgaagaaggtcgtcgacaaa 3199 ||||| || ||| ||| ||| ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 78240 aaagacgggcagatgagcagggaggtccacaagaccatcgtgaagaaggtcgtggacaag 78181 Query: 3200 gtcacgagcacggttgagaacatccctccaacaaaagagaagatcgatgtctacatgtcc 3259 || |||||||| || ||||||| |||||| || || ||||||||||| ||||||||| || Sbjct: 78180 gtgacgagcaccgtggagaacacccctccgaccaaggagaagatcgacgtctacatgacc 78121 Query: 3260 tactc 3264 ||||| Sbjct: 78120 tactc 78116 Score = 105 bits (53), Expect = 1e-18 Identities = 127/151 (84%), Gaps = 3/151 (1%) Strand = Plus / Minus Query: 684 caactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgatggatggg 743 |||||||||||||||| | | |||| |||| ||||||||||||||||| |||||||||| Sbjct: 81236 caactggtaaccaaggcacaaacagatatgcagatgacagaagacgtggtgatggatggg 81177 Query: 744 gcacagctgttagccgtggttactctt---ctagggtgtcgtctggtccagatgcatgga 800 | |||||| ||| |||| ||| |||| |||||| | | |||| |||||||||||||| Sbjct: 81176 gtacagctcctagtcgtgattattcttctgctagggcgccttctgatccagatgcatgga 81117 Query: 801 agcagcgcactcgcagtccatctccaagagg 831 |||||||| || ||||||||||||||||| Sbjct: 81116 ggcagcgcagccgaagtccatctccaagagg 81086 Score = 48.1 bits (24), Expect = 0.23 Identities = 39/44 (88%) Strand = Plus / Minus Query: 871 cagaagcaggagtagagagcgaggtagagggagaagcagaagtc 914 |||||||||||||| || |||||| ||||| || |||||||||| Sbjct: 80428 cagaagcaggagtatagggcgaggcagaggcaggagcagaagtc 80385
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 212 bits (107), Expect = 7e-51 Identities = 533/675 (78%) Strand = Plus / Minus Query: 1100 agggaaaggtatggccatcagaacaaggatttcctggatccacgagaaccagatgactat 1159 |||||||||||||| |||||| |||||| || ||||| || |||||||| |||||||| Sbjct: 89004 agggaaaggtatgggtatcagagcaaggagtttatggatacaagagaaccaaatgactat 88945 Query: 1160 gtacggagcaggcaacctcgaggtcattttgatgaaggtacttgggaaagatctgaaccc 1219 | ||||| |||||| |||| | || || |||||| || ||||||||||||||||||| Sbjct: 88944 ctgcggagtaggcaatctcgtgatcgttatgatgatgggccttgggaaagatctgaacct 88885 Query: 1220 cgaagagattacaggccttctgatcaatgccatgagtttgtcaaaggaaggtgcagcaga 1279 ||||| ||||| || | ||| | |||| | | |||| |||||| | |||| |||| Sbjct: 88884 cgaagggattatcggtatcctgcaccatgcattaattttgccaaagggaaatgcatcaga 88825 Query: 1280 ggtgcaagttgcagatatgttcatgatgagtccgcttctcatgttggatggagagatgat 1339 ||||| |||||| || || |||| ||| || |||||||||| | ||||||||||||| Sbjct: 88824 ggtgctagttgcctatttgcgcatggtgattctgcttctcatggtagatggagagatgag 88765 Query: 1340 gctagggaaacggctcatgtgagaggtggtcctgatttatcctatgggaataggacagag 1399 |||||||||| || |||| |||| ||| ||||||| |||||||||||||||||| ||| Sbjct: 88764 gctagggaaagtgcccatgatagagttggccctgattcatcctatgggaataggactgag 88705 Query: 1400 caccgtagagaaccaaaaaggccctgtaaattttttgctgaaggtcgctgccgtcgtggt 1459 |||||||| | | |||| || ||||| ||||||||||||||||| || || |||||| Sbjct: 88704 caccgtagggtaaataaaaacccttgtaagttttttgctgaaggtcgttgtcgccgtggt 88645 Query: 1460 gagacttgtccatatctccatgaggatgctccccaaagtcaaatgggcccaggtgcatct 1519 || | ||||||||||||||||||||| |||||||| ||||| || || ||||| || Sbjct: 88644 gaaaattgtccatatctccatgaggaagctccccagagtcagataggagtgagtgcacct 88585 Query: 1520 gatgagcctccaaaatacagtggtgggcgtacaccaagaggaaattattcgaattggggc 1579 |||||| | || |||||| ||||| | || |||||||||| ||||| || ||||| Sbjct: 88584 gatgaggatttgaatcacagtgatgggcatgcagcaagaggaaactattcaaactggggt 88525 Query: 1580 gaagaaactaatggtacacatgcaggttctcatattttatccagagatgacagggaaaac 1639 ||| ||| ||||| | |||||| ||||| ||||||||||| |||||||||||||| Sbjct: 88524 gaacaaaataatgctgtgcatgcaacctctcagattttatccagggatgacagggaaaat 88465 Query: 1640 cctgattctcagcatactgccagaagtgatactggatatgggtacaaaaaccggcaattg 1699 ||| ||||||| || || ||||| |||| || | ||| || |||||||||| | Sbjct: 88464 cctatttctcagagtattggcagaaatgattctcgcaatgattatgaaaaccggcattca 88405 Query: 1700 gaagatgctggaagggatcagtaccagataattcctcaagaggattttggttcacaaggg 1759 ||||| |||||| | |||||||| || |||||||| || |||||||||||||||||| Sbjct: 88404 aaagattctggaaagagccagtaccaaattattcctcaggaagattttggttcacaaggg 88345 Query: 1760 cgaaataaacctgaa 1774 | ||| |||| |||| Sbjct: 88344 caaaagaaacatgaa 88330 Score = 99.6 bits (50), Expect = 7e-17 Identities = 131/158 (82%) Strand = Plus / Minus Query: 3107 gactttgtgaaagacgccctcaaacctacgtggaaagagggccagctgaccagagaggtt 3166 ||||||||||| || || || || || ||||||||||| |||||| ||| ||| |||||| Sbjct: 87141 gactttgtgaaggaagcgctgaagccaacgtggaaagatggccagatgagcagggaggtt 87082 Query: 3167 cacaagaccatagtgaagaaggtcgtcgacaaagtcacgagcacggttgagaacatccct 3226 || || ||||| ||||||||||| ||||||||||| || ||||| || || || | |||| Sbjct: 87081 cataaaaccatcgtgaagaaggttgtcgacaaagttacaagcactgtggaaaatacccct 87022 Query: 3227 ccaacaaaagagaagatcgatgtctacatgtcctactc 3264 || || ||||||||||| || |||||||| ||||||| Sbjct: 87021 ccgaccaaagagaagattgacatctacatgacctactc 86984 Score = 99.6 bits (50), Expect = 7e-17 Identities = 124/148 (83%), Gaps = 3/148 (2%) Strand = Plus / Minus Query: 687 ctggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgatggatggggca 746 ||||||||||||| | || |||| |||| ||||| ||||||||||| ||||||||||| | Sbjct: 89919 ctggtaaccaaggcacgaacagatatgcagatgatagaagacgtggtgatggatggggta 89860 Query: 747 cagctgttagccgtggttactctt---ctagggtgtcgtctggtccagatgcatggaagc 803 ||||| ||| |||||||| |||| |||||| | | |||| |||||||||||||| || Sbjct: 89859 cagctcctagtcgtggttattcttctactagggcgccttctgatccagatgcatggaggc 89800 Query: 804 agcgcactcgcagtccatctccaagagg 831 || ||| || ||||||||||||||||| Sbjct: 89799 agtgcagccgaagtccatctccaagagg 89772 Score = 87.7 bits (44), Expect = 3e-13 Identities = 140/172 (81%) Strand = Plus / Minus Query: 938 cgtggttctgattggagggctgagagaggcagaatatctggaggaccttctttgctctgc 997 ||||| ||||| ||||||| |||||||||||||| ||||||||||||| | || ||| Sbjct: 89190 cgtggatctgagtggagggttgagagaggcagaacatctggaggacctgttcggccctgt 89131 Query: 998 agagattttacagctggtagatgcagaagaggcttgcattgcaggtttcctcatgaagat 1057 || |||||| ||||||| ||||||||||||| |||||||||| | |||||||||| Sbjct: 89130 agggattttgtgtctggtaggtgcagaagaggctcaaattgcaggttccttcatgaagat 89071 Query: 1058 ggtgggcgaaggcagtttgatgagccttatcccgcagactcgagggaaaggt 1109 ||||||| |||| ||||| || | |||||| || ||| | |||||||||| Sbjct: 89070 ggtgggcacaggccatttgaagatcattatcctgctgacccaagggaaaggt 89019 Score = 56.0 bits (28), Expect = 0.001 Identities = 40/44 (90%) Strand = Plus / Minus Query: 871 cagaagcaggagtagagagcgaggtagagggagaagcagaagtc 914 |||||||||||||| || |||||||||||| || |||||||||| Sbjct: 89248 cagaagcaggagtatagggcgaggtagaggcaggagcagaagtc 89205 Score = 54.0 bits (27), Expect = 0.004 Identities = 54/63 (85%) Strand = Plus / Minus Query: 344 tccaagtgggacacacaagaaatttctcctgatattgttgagatcagtgaagatgactct 403 ||||||||||||||| ||||| |||| ||| | |||||||||||||||||||| ||| Sbjct: 90187 tccaagtgggacacaaaagaaggatctcatgaagtagttgagatcagtgaagatgagtct 90128 Query: 404 cct 406 ||| Sbjct: 90127 cct 90125 Score = 50.1 bits (25), Expect = 0.058 Identities = 31/33 (93%) Strand = Plus / Minus Query: 3289 acaggcatatgtgggcaagtatgtcaaggcgta 3321 |||||||||||| |||||||||| ||||||||| Sbjct: 86832 acaggcatatgttggcaagtatgccaaggcgta 86800
>dbj|AK111729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J07, full insert sequence Length = 2390 Score = 176 bits (89), Expect = 4e-40 Identities = 324/399 (81%), Gaps = 5/399 (1%) Strand = Plus / Plus Query: 1134 tggatccacgagaaccagatgactatgtacggagcaggcaacctcgaggt---cattttg 1190 ||||||||||||||| |||||||||| || ||| |||| |||||||||| |||| || Sbjct: 8 tggatccacgagaacaagatgactatttaaggaataggccacctcgaggtggccattatg 67 Query: 1191 atgaaggtacttgggaaagatctgaaccccgaagagattacaggccttctgat-caatgc 1249 ||||||| |||||||||||||||||||| ||||| || || || || | ||| | |||| Sbjct: 68 atgaaggaacttgggaaagatctgaacctcgaagggagtatcggtctac-gatgccatgc 126 Query: 1250 catgagtttgtcaaaggaaggtgcagcagaggtgcaagttgcagatatgttcatgatgag 1309 ||||| |||||||||||||| ||||| || ||||| | |||| |||||||||||||||| Sbjct: 127 catgattttgtcaaaggaagatgcagtaggggtgcgaattgccgatatgttcatgatgat 186 Query: 1310 tccgcttctcatgttggatggagagatgatgctagggaaacggctcatgtgagaggtggt 1369 ||| | |||||| ||||||||||||||| | ||| || | ||| || ||| |||| Sbjct: 187 tccacccctcatggtggatggagagatgaggttagagataatgctattggtagaagtggc 246 Query: 1370 cctgatttatcctatgggaataggacagagcaccgtagagaaccaaaaaggccctgtaaa 1429 ||||||| ||| |||||||| ||||| |||||||||||| | |||| ||||| ||| Sbjct: 247 cctgattcatcatatgggaacaggactgagcaccgtagaacaaataaaaacccctgcaaa 306 Query: 1430 ttttttgctgaaggtcgctgccgtcgtggtgagacttgtccatatctccatgaggatgct 1489 ||||||||| | ||| | ||||||||||| | | ||| ||||||||||| ||||| ||| Sbjct: 307 ttttttgctaacggtggatgccgtcgtggccaaaattgcccatatctccacgaggaagct 366 Query: 1490 ccccaaagtcaaatgggcccaggtgcatctgatgagcct 1528 |||| || |||||||| | |||||| ||||||||||| Sbjct: 367 tcccagagccaaatgggactgggtgcacctgatgagcct 405 Score = 167 bits (84), Expect = 4e-37 Identities = 309/384 (80%) Strand = Plus / Plus Query: 1605 gttctcatattttatccagagatgacagggaaaaccctgattctcagcatactgccagaa 1664 |||||||| |||| || |||| |||||| |||||||||| | ||||| ||||| ||||| Sbjct: 479 gttctcatgttttgtcaagaggtgacagagaaaaccctgttcctcagggtactggcagaa 538 Query: 1665 gtgatactggatatgggtacaaaaaccggcaattggaagatgctggaagggatcagtacc 1724 |||| || |||||| | ||||||||||||| | ||||||||||||| |||||||| Sbjct: 539 atgattctcgatatgagaacaaaaaccggcattccaaagatgctggaagtagtcagtacc 598 Query: 1725 agataattcctcaagaggattttggttcacaagggcgaaataaacctgaaatggctgctc 1784 ||||| | ||||| || |||||||||||| ||||| ||| ||||||||||| |||||| Sbjct: 599 agatattccctcaggatgattttggttcagtagggcaaaacaaacctgaaatagctgctt 658 Query: 1785 caaaacagcaacagtttttaagtcctatccaaacaagtggggatagcatgaacaatgaca 1844 || ||| || |||||| || | || |||||||| | || ||||| |||| ||||| Sbjct: 659 cacaactgccacagttcataccttctgtccaaacaggcacagagagcataaacattgaca 718 Query: 1845 aggtatctggcatggatggtctgggtgcatctgctaccactggcaatttgagtatgcaaa 1904 ||||||||| ||||| ||||| | ||| | ||| ||| |||||||||||||||||||| Sbjct: 719 aggtatctgacatgggtggtcagagtggacctggaaccgttggcaatttgagtatgcaaa 778 Query: 1905 ctgggagacatgctcctaatcttttagatgggcaaagcttgagccaaatagcacagagcc 1964 |||| ||| || |||||||||||| ||||| | |||| |||||| |||| |||||| Sbjct: 779 tcgggatgcattctgctaatcttttaggagggcataacttgggccaaaaagcagagagcc 838 Query: 1965 aagatgcagttcctcaaacttctg 1988 |||||||| || |||||| ||||| Sbjct: 839 aagatgcaatttctcaaatttctg 862 Score = 149 bits (75), Expect = 8e-32 Identities = 207/251 (82%) Strand = Plus / Plus Query: 3066 aggagtccaaggcactgaagatgtttaaactcgcgctcgccgactttgtgaaagacgccc 3125 |||| |||||||| ||||||||||||| || || || || ||||||||||| || || | Sbjct: 1784 aggattccaaggcgttgaagatgtttaagcttgcactggctgactttgtgaaggatgcac 1843 Query: 3126 tcaaacctacgtggaaagagggccagctgaccagagaggttcacaagaccatagtgaaga 3185 | || || || ||||||||||| || ||| |||||||||||| || || || ||||||| Sbjct: 1844 ttaagcccacctggaaagagggtcaaatgagcagagaggttcataaaacaattgtgaaga 1903 Query: 3186 aggtcgtcgacaaagtcacgagcacggttgagaacatccctccaacaaaagagaagatcg 3245 |||| ||||||||||| |||| ||| ||||| || | |||| ||||||||||||||| | Sbjct: 1904 aggttgtcgacaaagttacgaccacagttgaaaatactcctcaaacaaaagagaagattg 1963 Query: 3246 atgtctacatgtcctactcgaaagaaaaactcagcaaacttgtacaggcatatgtgggca 3305 || | |||||||||||||| | |||||| || | |||||| || ||||||||||| |||| Sbjct: 1964 atatttacatgtcctactccagagaaaagctaaacaaactcgtccaggcatatgttggca 2023 Query: 3306 agtatgtcaag 3316 |||||| |||| Sbjct: 2024 agtatgccaag 2034 Score = 73.8 bits (37), Expect = 4e-09 Identities = 64/73 (87%) Strand = Plus / Plus Query: 2391 tgcaaaacacacatagtttccagcccgttgctccaaatatgcaagctcatagtcaagcct 2450 ||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||| Sbjct: 1229 tgcaaaacacacataatttccagcctgttgctccaaatgagcaaactcagagtcaaacct 1288 Query: 2451 tgcaggggctatc 2463 |||| ||| |||| Sbjct: 1289 tgcaagggttatc 1301 Score = 54.0 bits (27), Expect = 0.004 Identities = 75/91 (82%) Strand = Plus / Plus Query: 2109 acttctcattacatccgagcaggcaagatcaatttgtagcttctcaggcaactgcaaata 2168 |||| ||||||||||| | ||||| || || |||| || | |||| |||||| |||||| Sbjct: 944 acttttcattacatccaaataggcaggaccagtttgcagttcctcatgcaactacaaata 1003 Query: 2169 attcggctcctagcatgcagaatcagccagt 2199 | || |||||||||||||||| |||||||| Sbjct: 1004 actctgctcctagcatgcagagccagccagt 1034 Score = 54.0 bits (27), Expect = 0.004 Identities = 27/27 (100%) Strand = Plus / Plus Query: 2504 aacacacataatttccagcctgttgct 2530 ||||||||||||||||||||||||||| Sbjct: 1234 aacacacataatttccagcctgttgct 1260
>gb|AY123849.1| Human immunodeficiency virus 1 isolate TZMoE47010 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 654 Score = 46.1 bits (23), Expect = 0.90 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1944 tgagccaaatagcacagagccaa 1966 ||||||||||||||||||||||| Sbjct: 378 tgagccaaatagcacagagccaa 400
>ref|NM_001074128.1| Oryza sativa (japonica cultivar-group) Os11g0244100 (Os11g0244100) mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 cgacgccgcctccgccgtcccg 81 |||||||||||||||||||||| Sbjct: 1321 cgacgccgcctccgccgtcccg 1300
>gb|AC187328.7| Canis Familiaris chromosome 16, clone XX-28F20, complete sequence Length = 212377 Score = 44.1 bits (22), Expect = 3.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 884 agagagcgaggtagagggagaagcag 909 |||||| ||||||||||||||||||| Sbjct: 43468 agagagagaggtagagggagaagcag 43443
>gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, complete sequence Length = 158563 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1726 gataattcctcaagaggatttt 1747 |||||||||||||||||||||| Sbjct: 96620 gataattcctcaagaggatttt 96641
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 cgacgccgcctccgccgtcccg 81 |||||||||||||||||||||| Sbjct: 124422 cgacgccgcctccgccgtcccg 124443
>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0024M06, complete sequence Length = 51144 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 cgacgccgcctccgccgtcccg 81 |||||||||||||||||||||| Sbjct: 50931 cgacgccgcctccgccgtcccg 50910
>gb|AC154992.11| Mus musculus chromosome 1, clone RP23-420P19, complete sequence Length = 217255 Score = 44.1 bits (22), Expect = 3.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1790 cagcaacagtttttaagtcctatcca 1815 |||||||| ||||||||||||||||| Sbjct: 104560 cagcaacattttttaagtcctatcca 104585
>dbj|AB179229.1| Macaca fascicularis testis cDNA clone: QtsA-15701, similar to human calcium channel, voltage-dependent, L type, alpha 1Bsubunit (CACNA1B), mRNA, RefSeq: NM_000718.1 Length = 4032 Score = 44.1 bits (22), Expect = 3.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2986 agaaaataagaaagtagaaaccaaag 3011 ||||| |||||||||||||||||||| Sbjct: 2507 agaaattaagaaagtagaaaccaaag 2532
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2935 gttggtcggtcagaccgctgct 2956 |||||||||||||||||||||| Sbjct: 26287 gttggtcggtcagaccgctgct 26266
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2935 gttggtcggtcagaccgctgct 2956 |||||||||||||||||||||| Sbjct: 6567077 gttggtcggtcagaccgctgct 6567056 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 cgacgccgcctccgccgtcccg 81 |||||||||||||||||||||| Sbjct: 7665336 cgacgccgcctccgccgtcccg 7665357
>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence Length = 164706 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1523 gagcctccaaaatacagtggtg 1544 |||||||||||||||||||||| Sbjct: 133168 gagcctccaaaatacagtggtg 133147
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2383 tcagagcatgcaaaacacacat 2404 |||||||||||||||||||||| Sbjct: 38774 tcagagcatgcaaaacacacat 38795
>gb|AC084550.1|CBRG33D04 Caenorhabditis briggsae cosmid G33D04, complete sequence Length = 39089 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3465 atcatcatcgtcttcttctttt 3486 |||||||||||||||||||||| Sbjct: 22087 atcatcatcgtcttcttctttt 22066
>gb|AC006296.8|AC006296 Homo sapiens chromosome 4 clone C0153I05 map 4p16.3, complete sequence Length = 193930 Score = 44.1 bits (22), Expect = 3.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 949 ttggagggctgagagaggcaga 970 |||||||||||||||||||||| Sbjct: 160333 ttggagggctgagagaggcaga 160312 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 676,302,970 Number of extensions: 34780960 Number of successful extensions: 183219 Number of sequences better than 10.0: 22 Number of HSP's gapped: 183197 Number of HSP's successfully gapped: 108 Length of query: 3676 Length of database: 18,610,659,111 Length adjustment: 24 Effective length of query: 3652 Effective length of database: 18,499,340,271 Effective search space: 67559590669692 Effective search space used: 67559590669692 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
