ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf48e16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on ch... 48 0.064
2emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & C... 48 0.064
3emb|AL731651.1| Mouse DNA sequence from clone XX-PAC129 on chrom... 48 0.064
4gb|BC085240.1| Mus musculus cDNA clone IMAGE:6476104, **** WARNI... 44 1.00
5gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, com... 44 1.00
6ref|NM_010233.1| Mus musculus fibronectin 1 (Fn1), mRNA 44 1.00
7dbj|AK147315.1| Mus musculus cDNA, RIKEN full-length enriched li... 44 1.00
8dbj|AK147249.1| Mus musculus cDNA, RIKEN full-length enriched li... 44 1.00
9dbj|AK133868.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 44 1.00
10dbj|AK147701.1| Mus musculus 14 days pregnant adult female place... 44 1.00
11dbj|AK147683.1| Mus musculus 14 days pregnant adult female place... 44 1.00
12dbj|AK147663.1| Mus musculus 14 days pregnant adult female place... 44 1.00
13dbj|AK147639.1| Mus musculus 14 days pregnant adult female place... 44 1.00
14dbj|AK171339.1| Mus musculus B6-derived CD11 +ve dendritic cells... 44 1.00
15dbj|AK159794.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 44 1.00
16dbj|AK170755.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 44 1.00
17dbj|AK090135.1| Mus musculus bone marrow stroma cell CRL-2028 SR... 44 1.00
18dbj|AK090130.1| Mus musculus bone marrow stroma cell CRL-2028 SR... 44 1.00
19gb|AF440571.1|AF440571 Sulfolobus islandicus filamentous virus, ... 44 1.00
20gb|BC025521.1| Mus musculus fibronectin 1, mRNA (cDNA clone IMAG... 44 1.00
21gb|BC036167.1| Mus musculus fibronectin 1, mRNA (cDNA clone IMAG... 44 1.00
22ref|NM_019143.1| Rattus norvegicus fibronectin 1 (Fn1), mRNA >gi... 44 1.00
23gb|AF136527.1|AF136527 Gambusia affinis RAPD band UBC16sub(1020)... 44 1.00
24emb|X93167.1|MMFIBL M.musculus mRNA for fibronectin 44 1.00
25gb|L00191.1|RATFN3M1 Rat fibronectin (cell-, heparin-, and fibri... 44 1.00
26gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete ... 42 3.9
27gb|AC125583.3| Rattus norvegicus 4 BAC CH230-1A7 (Children's Hos... 42 3.9
28ref|XM_849072.1| PREDICTED: Canis familiaris similar to predicte... 42 3.9
29gb|AC094253.7| Rattus norvegicus 4 BAC CH230-3E12 (Children's Ho... 42 3.9
30gb|AC007982.2| Homo sapiens chromosome 17, clone RP11-44H5, comp... 42 3.9
31emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, ... 42 3.9
32emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, B... 42 3.9
33emb|AL390334.4|CNS06C7N Human chromosome 14 DNA sequence BAC R-6... 42 3.9
34emb|AL391748.3|CNS06C8H Human chromosome 14 DNA sequence BAC R-6... 42 3.9 
>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete
              sequence
          Length = 201142
 Score = 48.1 bits (24), Expect = 0.064
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 875    ttgggccaggtgaggctgaagagg 898
              ||||||||||||||||||||||||
Sbjct: 194148 ttgggccaggtgaggctgaagagg 194171
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>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes
          Length = 234411

 Score = 48.1 bits (24), Expect = 0.064
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 875   ttgggccaggtgaggctgaagagg 898
             ||||||||||||||||||||||||
Sbjct: 88775 ttgggccaggtgaggctgaagagg 88798
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>emb|AL731651.1| Mouse DNA sequence from clone XX-PAC129 on chromosome 4, complete
            sequence
          Length = 147323

 Score = 48.1 bits (24), Expect = 0.064
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 875  ttgggccaggtgaggctgaagagg 898
            ||||||||||||||||||||||||
Sbjct: 2464 ttgggccaggtgaggctgaagagg 2487
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>gb|BC085240.1| Mus musculus cDNA clone IMAGE:6476104, **** WARNING: chimeric clone
            ****
          Length = 3461

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 1232 ccacctgtacactctgaacgacaatgcccggagc 1265
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>gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, complete sequence
          Length = 185212

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 447   ccacctgcgcactctcaacgacaatgcccggagc 480
             |||||||  |||||| ||||||||||||||||||
Sbjct: 43625 ccacctgtacactctgaacgacaatgcccggagc 43592
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>ref|NM_010233.1| Mus musculus fibronectin 1 (Fn1), mRNA
          Length = 8312

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 6102 ccacctgtacactctgaacgacaatgcccggagc 6135
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>dbj|AK147315.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1012H16 product:fibronectin 1, full insert
            sequence
          Length = 7966

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5831 ccacctgtacactctgaacgacaatgcccggagc 5864
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>dbj|AK147249.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1002C13 product:fibronectin 1, full insert
            sequence
          Length = 6453

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 4242 ccacctgtacactctgaacgacaatgcccggagc 4275
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>dbj|AK133868.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730467P21 product:fibronectin 1,
            full insert sequence
          Length = 3868

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 1647 ccacctgtacactctgaacgacaatgcccggagc 1680
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>dbj|AK147701.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:M5C1110B19
            product:fibronectin 1, full insert sequence
          Length = 7410

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5560 ccacctgtacactctgaacgacaatgcccggagc 5593
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>dbj|AK147683.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:M5C1107M04
            product:fibronectin 1, full insert sequence
          Length = 8044

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5831 ccacctgtacactctgaacgacaatgcccggagc 5864
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>dbj|AK147663.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:M5C1104K23
            product:fibronectin 1, full insert sequence
          Length = 7694

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5560 ccacctgtacactctgaacgacaatgcccggagc 5593
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>dbj|AK147639.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:M5C1097M02
            product:fibronectin 1, full insert sequence
          Length = 7681

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5831 ccacctgtacactctgaacgacaatgcccggagc 5864
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>dbj|AK171339.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730016A13
            product:fibronectin 1, full insert sequence
          Length = 5686

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5561 ccacctgtacactctgaacgacaatgcccggagc 5594
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>dbj|AK159794.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420031G03 product:fibronectin 1, full
            insert sequence
          Length = 4023

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 1189 ccacctgtacactctgaacgacaatgcccggagc 1222
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>dbj|AK170755.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630118J10
            product:fibronectin 1, full insert sequence
          Length = 7799

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 5590 ccacctgtacactctgaacgacaatgcccggagc 5623
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>dbj|AK090135.1| Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN
            full-length enriched library, clone:G431004D19
            product:fibronectin 1, full insert sequence
          Length = 8315

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 6105 ccacctgtacactctgaacgacaatgcccggagc 6138
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>dbj|AK090130.1| Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN
            full-length enriched library, clone:G431002M24
            product:fibronectin 1, full insert sequence
          Length = 8329

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 6116 ccacctgtacactctgaacgacaatgcccggagc 6149
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>gb|AF440571.1|AF440571 Sulfolobus islandicus filamentous virus, partial genome
          Length = 40047

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 886   gaggctgaagaggaagaatgac 907
             ||||||||||||||||||||||
Sbjct: 16367 gaggctgaagaggaagaatgac 16346
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>gb|BC025521.1| Mus musculus fibronectin 1, mRNA (cDNA clone IMAGE:5322364), partial
            cds
          Length = 3141

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 988  ccacctgtacactctgaacgacaatgcccggagc 1021
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>gb|BC036167.1| Mus musculus fibronectin 1, mRNA (cDNA clone IMAGE:4985138), partial
            cds
          Length = 3591

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 1344 ccacctgtacactctgaacgacaatgcccggagc 1377
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>ref|NM_019143.1| Rattus norvegicus fibronectin 1 (Fn1), mRNA
 emb|X15906.1|RNFIBRON Rat mRNA for fibronectin
          Length = 8329

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  ||| |||||||||||||||||||||
Sbjct: 6120 ccacctgtacacgctcaacgacaatgcccggagc 6153
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>gb|AF136527.1|AF136527 Gambusia affinis RAPD band UBC16sub(1020) sequence
          Length = 1049

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 226 aaggaaacacaagcaacaacaa 247
           ||||||||||||||||||||||
Sbjct: 397 aaggaaacacaagcaacaacaa 376
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>emb|X93167.1|MMFIBL M.musculus mRNA for fibronectin
          Length = 4435

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 447  ccacctgcgcactctcaacgacaatgcccggagc 480
            |||||||  |||||| ||||||||||||||||||
Sbjct: 3220 ccacctgtacactctgaacgacaatgcccggagc 3253
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>gb|L00191.1|RATFN3M1 Rat fibronectin (cell-, heparin-, and fibrin-binding domains) gene
           encoding three fibronectin mRNAs, exons 1,2,3
          Length = 2350

 Score = 44.1 bits (22), Expect = 1.00
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 447 ccacctgcgcactctcaacgacaatgcccggagc 480
           |||||||  ||| |||||||||||||||||||||
Sbjct: 888 ccacctgtacacgctcaacgacaatgcccggagc 921
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>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence
          Length = 3556545

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 352     cgggcgaatcccgcgcgctcg 372
               |||||||||||||||||||||
Sbjct: 2536106 cgggcgaatcccgcgcgctcg 2536086
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>gb|AC125583.3| Rattus norvegicus 4 BAC CH230-1A7 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 205786

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    actgcagatacaatcacaaaa 90
             |||||||||||||||||||||
Sbjct: 94729 actgcagatacaatcacaaaa 94749
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>ref|XM_849072.1| PREDICTED: Canis familiaris similar to predicted gene
           ICRFP703B1614Q5.5 (LOC611404), mRNA
          Length = 1323

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 646 tatattacttgtgtatgcttg 666
           |||||||||||||||||||||
Sbjct: 269 tatattacttgtgtatgcttg 249
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>gb|AC094253.7| Rattus norvegicus 4 BAC CH230-3E12 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 209550

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     actgcagatacaatcacaaaa 90
              |||||||||||||||||||||
Sbjct: 186017 actgcagatacaatcacaaaa 186037
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>gb|AC007982.2| Homo sapiens chromosome 17, clone RP11-44H5, complete sequence
          Length = 186360

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    aagcctctctaccttacatgg 41
             |||||||||||||||||||||
Sbjct: 66693 aagcctctctaccttacatgg 66673
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>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
          Length = 196247

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 781    ataagttggttagcttgtcccttga 805
              |||| ||||||||||||||||||||
Sbjct: 171721 ataatttggttagcttgtcccttga 171697
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>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project)
          Length = 82891

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 781   ataagttggttagcttgtcccttga 805
             |||| ||||||||||||||||||||
Sbjct: 14379 ataatttggttagcttgtcccttga 14355
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>emb|AL390334.4|CNS06C7N Human chromosome 14 DNA sequence BAC R-664B22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170011

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    catgtaagaacaagaaaatga 141
              |||||||||||||||||||||
Sbjct: 163774 catgtaagaacaagaaaatga 163754
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>emb|AL391748.3|CNS06C8H Human chromosome 14 DNA sequence BAC R-630G18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170915

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    catgtaagaacaagaaaatga 141
              |||||||||||||||||||||
Sbjct: 141275 catgtaagaacaagaaaatga 141295


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 169,142,329
Number of extensions: 9347221
Number of successful extensions: 187392
Number of sequences better than 10.0: 34
Number of HSP's gapped: 187392
Number of HSP's successfully gapped: 34
Length of query: 1041
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1018
Effective length of database: 18,503,978,556
Effective search space: 18837050170008
Effective search space used: 18837050170008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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