>O22860:RL38_ARATH 60S ribosomal protein L38 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 69
 Score =  123 bits (309), Expect = 3e-28
 Identities = 59/69 (85%), Positives = 66/69 (95%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSRYLYTLCV D +KA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPGL+VQ++
Sbjct: 61  PPGLSVQDL 69

>P46291:RL38_SOLLC 60S ribosomal protein L38 - Solanum lycopersicum (Tomato)|
           (Lycopersicon esculentum)
          Length = 69

 Score =  119 bits (298), Expect = 6e-27
 Identities = 56/69 (81%), Positives = 65/69 (94%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MPKQIHEIKDFLLTARRKDAR+V+IK+ KD VKFKVRCS+YLYTLCV D +KA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPGL+VQ++
Sbjct: 61  PPGLSVQDL 69

>P63174:RL38_RAT 60S ribosomal protein L38 - Rattus norvegicus (Rat)|
          Length = 70

 Score =  108 bits (269), Expect = 1e-23
 Identities = 52/69 (75%), Positives = 61/69 (88%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MP++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPGL V+E+
Sbjct: 61  PPGLAVKEL 69

>P63173:RL38_HUMAN 60S ribosomal protein L38 - Homo sapiens (Human)|
          Length = 70

 Score =  108 bits (269), Expect = 1e-23
 Identities = 52/69 (75%), Positives = 61/69 (88%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MP++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPGL V+E+
Sbjct: 61  PPGLAVKEL 69

>Q8HXB9:RL38_MACFA 60S ribosomal protein L38 - Macaca fascicularis (Crab eating|
           macaque) (Cynomolgus monkey)
          Length = 70

 Score =  107 bits (268), Expect = 2e-23
 Identities = 52/68 (76%), Positives = 60/68 (88%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MP++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 263 PPGLNVQE 286
           PPGL V+E
Sbjct: 61  PPGLAVKE 68

>Q32PB9:RL38_BOVIN 60S ribosomal protein L38 - Bos taurus (Bovine)|
          Length = 70

 Score =  107 bits (267), Expect = 2e-23
 Identities = 51/69 (73%), Positives = 61/69 (88%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MP++I EIKDF+LTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSL
Sbjct: 1   MPRKIEEIKDFMLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPGL V+E+
Sbjct: 61  PPGLAVKEL 69

>Q9JJI8:RL38_MOUSE 60S ribosomal protein L38 - Mus musculus (Mouse)|
          Length = 70

 Score =  107 bits (266), Expect = 3e-23
 Identities = 51/69 (73%), Positives = 61/69 (88%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MP++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPGL V+++
Sbjct: 61  PPGLAVKDL 69

>O17570:RL38_CAEEL 60S ribosomal protein L38 - Caenorhabditis elegans|
          Length = 70

 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 47/69 (68%), Positives = 57/69 (82%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MPK+I EIKDFL+ ARRKDA+SV+IK+  +  KFKVRC+ YLYTL V D DKA KLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPG+ V+E+
Sbjct: 61  PPGIQVKEL 69

>O61570:RL38_OSTOS 60S ribosomal protein L38 - Ostertagia ostertagi|
          Length = 70

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 49/69 (71%), Positives = 57/69 (82%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 262
           MPKQI EIKDFL+ ARRKDA+ V+IK+    VKFKVRCSRYL+TL V+D DKA KLKQSL
Sbjct: 1   MPKQITEIKDFLVLARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSL 60

Query: 263 PPGLNVQEV 289
           PPG+ V E+
Sbjct: 61  PPGIQVIEL 69

>Q9USR7:RL38A_SCHPO 60S ribosomal protein L38-1 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 74

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 46/70 (65%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKR-TKDAVKFKVRCSRYLYTLCVHDTDKANKLKQS 259
           MP+QI +IK FL  ARRKDA S RIK+ T   VKFK+RCS+YLYTL V D  KA KL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 260 LPPGLNVQEV 289
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70

>Q09900:RL38B_SCHPO 60S ribosomal protein L38-2 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 74

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKD-AVKFKVRCSRYLYTLCVHDTDKANKLKQS 259
           MP+Q+ +IK FL  A R DA S R+K+ ++ AVKFK+RCSRYLYTL V D  KA KL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 260 LPPGLNVQEV 289
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70

>Q9C2B9:RL38_NEUCR 60S ribosomal protein L38 - Neurospora crassa|
          Length = 80

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTK--DAVKFKVRCSRYLYTLCVHDTDKANKLKQ 256
           MP++I +IK F+   RRKDA + RIK+ K    +KFKVRC +YLYTL + D+DKA KLK 
Sbjct: 1   MPQEIGDIKKFIEICRRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKA 60

Query: 257 SLPPGLNVQEV 289
           SLPP L + +V
Sbjct: 61  SLPPSLTIADV 71

>P49167:RL38_YEAST 60S ribosomal protein L38 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 78

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDA---------VKFKVRCSRYLYTLCVHDTD 235
           M ++I +IK FL   RR D ++  +K  K            KFKVR S  LYTL ++D  
Sbjct: 1   MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60

Query: 236 KANKLKQSLPPGLNVQEV 289
           KA KL QSLPP L V  +
Sbjct: 61  KAKKLIQSLPPTLKVNRL 78

>Q9YFR9:RL38_AERPE 50S ribosomal protein L38E - Aeropyrum pernix|
          Length = 67

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/58 (41%), Positives = 31/58 (53%)
 Frame = +2

Query: 83  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQ 256
           MP ++    +F+    R  A   R+KR KD VK K R  RYLYTL V    +A  L+Q
Sbjct: 1   MPVELKSFDEFVKVVER--AVECRVKRGKDVVKIKARTKRYLYTLKVPPEKEAEVLEQ 56

>Q63257:IL4RA_RAT Interleukin-4 receptor alpha chain precursor - Rattus norvegicus|
           (Rat)
          Length = 801

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 196 AAHLELDGVLGPLDPHRPRVLPPRRQQKVLDLV---DLLRHGEGRWSPAQILG 47
           A HLE   +L P+DPH     PP +Q +  + +    +L+HG    +PA   G
Sbjct: 515 AGHLEEGDLLSPVDPHSSG--PPMQQAESWEQILHMSVLQHGTAGSTPAPTSG 565


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 72,297,237
Number of extensions: 1450728
Number of successful extensions: 3403
Number of sequences better than 10.0: 15
Number of HSP's gapped: 3400
Number of HSP's successfully gapped: 15
Length of query: 170
Length of database: 100,686,439
Length adjustment: 105
Effective length of query: 65
Effective length of database: 71,885,464
Effective search space: 4672555160
Effective search space used: 4672555160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)