ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf45d04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT828471.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014G06, full insert sequence Length = 1228 Score = 488 bits (246), Expect = e-134 Identities = 510/598 (85%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||||||| ||| |||||||| |||||| |||||||||||| Sbjct: 221 ccatggcggcgagggcgcaggcgtggctgttcgcggccgcgctggtcatcttccacggct 280 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccacctcacttc 206 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||||| Sbjct: 281 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccacatcacttc 340 Query: 207 ttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctgacagaaa 266 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 341 ttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctgacagaag 400 Query: 267 gccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttctgatgg 326 ||| ||||||| ||| | || | |||| |||||||||| || |||| | | |||| Sbjct: 401 ctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttagtaatgg 460 Query: 327 tgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcctttacac 386 || || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||||||| | Sbjct: 461 tgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcctttacgc 520 Query: 387 atgttatacggattcagtatgaagaccagcatcagttggtaactcatggaatttatagat 446 |||||||| | ||||| ||||||||||| ||| || || | |||||||| | ||||| Sbjct: 521 atgttataagaattcactatgaagaccaacataagctgattactcatggggtgtataggc 580 Query: 447 ttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacaggttatgc 506 ||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct: 581 ttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccaggttatgt 640 Query: 507 tgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttcttttcaaagc 566 |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||||||| | Sbjct: 641 tgtgtaatccattatccacagttgcattcacattggtgctgtggcgattcttttcaaaac 700 Query: 567 ggataccatatgaagaatttttcttgaggcaattttttggctctcaatatgaagaatatg 626 ||||||| ||||||||||||||||| ||||| || ||||| | |||| |||||||| | Sbjct: 701 ggataccgtatgaagaatttttcttaaggcagttctttggtcgtgaatacgaagaatacg 760 Query: 627 caaggaaagtgcactcggggttaccatttataaactgaatgtttcaaacttacaaagt 684 || |||||||||||| || ||||| |||||| | |||| |||||||||||||||||| Sbjct: 761 cacagaaagtgcactcaggattaccttttatagaatgaaagtttcaaacttacaaagt 818
>ref|NM_001060312.1| Oryza sativa (japonica cultivar-group) Os04g0602900 (Os04g0602900) mRNA, partial cds Length = 1283 Score = 365 bits (184), Expect = 2e-97 Identities = 409/484 (84%) Strand = Plus / Plus Query: 201 cacttcttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctga 260 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 392 cacttcttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctga 451 Query: 261 cagaaagccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttc 320 ||||| ||| ||||||| ||| | || | |||| |||||||||| || |||| | Sbjct: 452 cagaagctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttag 511 Query: 321 tgatggtgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcct 380 | |||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 512 taatggtgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcct 571 Query: 381 ttacacatgttatacggattcagtatgaagaccagcatcagttggtaactcatggaattt 440 |||| ||||||||| | ||||| ||||||||||| ||| || || | |||||||| | | Sbjct: 572 ttacgcatgttataagaattcactatgaagaccaacataagctgattactcatggggtgt 631 Query: 441 atagatttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacagg 500 |||| ||||||| |||||||||||||| ||||||||| |||||||||| ||||| |||| Sbjct: 632 ataggcttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccagg 691 Query: 501 ttatgctgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttctttt 560 ||||| |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||| Sbjct: 692 ttatgttgtgtaatccattatccacagttgcattcacattggtgctgtggcgattctttt 751 Query: 561 caaagcggataccatatgaagaatttttcttgaggcaattttttggctctcaatatgaag 620 |||| |||||||| ||||||||||||||||| ||||| || ||||| | |||| |||| Sbjct: 752 caaaacggataccgtatgaagaatttttcttaaggcagttctttggtcgtgaatacgaag 811 Query: 621 aatatgcaaggaaagtgcactcggggttaccatttataaactgaatgtttcaaacttaca 680 |||| ||| |||||||||||| || ||||| |||||| | |||| |||||||||||||| Sbjct: 812 aatacgcacagaaagtgcactcaggattaccttttatagaatgaaagtttcaaacttaca 871 Query: 681 aagt 684 |||| Sbjct: 872 aagt 875 Score = 127 bits (64), Expect = 9e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||||||| ||| |||||||| |||||| |||||||||||| Sbjct: 193 ccatggcggcgagggcgcaggcgtggctgttcgcggccgcgctggtcatcttccacggct 252 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccac 198 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 253 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccac 304
>dbj|AK100414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M06, full insert sequence Length = 1284 Score = 365 bits (184), Expect = 2e-97 Identities = 409/484 (84%) Strand = Plus / Plus Query: 201 cacttcttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctga 260 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 393 cacttcttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctga 452 Query: 261 cagaaagccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttc 320 ||||| ||| ||||||| ||| | || | |||| |||||||||| || |||| | Sbjct: 453 cagaagctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttag 512 Query: 321 tgatggtgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcct 380 | |||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 513 taatggtgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcct 572 Query: 381 ttacacatgttatacggattcagtatgaagaccagcatcagttggtaactcatggaattt 440 |||| ||||||||| | ||||| ||||||||||| ||| || || | |||||||| | | Sbjct: 573 ttacgcatgttataagaattcactatgaagaccaacataagctgattactcatggggtgt 632 Query: 441 atagatttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacagg 500 |||| ||||||| |||||||||||||| ||||||||| |||||||||| ||||| |||| Sbjct: 633 ataggcttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccagg 692 Query: 501 ttatgctgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttctttt 560 ||||| |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||| Sbjct: 693 ttatgttgtgtaatccattatccacagttgcattcacattggtgctgtggcgattctttt 752 Query: 561 caaagcggataccatatgaagaatttttcttgaggcaattttttggctctcaatatgaag 620 |||| |||||||| ||||||||||||||||| ||||| || ||||| | |||| |||| Sbjct: 753 caaaacggataccgtatgaagaatttttcttaaggcagttctttggtcgtgaatacgaag 812 Query: 621 aatatgcaaggaaagtgcactcggggttaccatttataaactgaatgtttcaaacttaca 680 |||| ||| |||||||||||| || ||||| |||||| | |||| |||||||||||||| Sbjct: 813 aatacgcacagaaagtgcactcaggattaccttttatagaatgaaagtttcaaacttaca 872 Query: 681 aagt 684 |||| Sbjct: 873 aagt 876 Score = 127 bits (64), Expect = 9e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||||||| ||| |||||||| |||||| |||||||||||| Sbjct: 194 ccatggcggcgagggcgcaggcgtggctgttcgcggccgcgctggtcatcttccacggct 253 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccac 198 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 254 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccac 305
>gb|AY107291.1| Zea mays PCO145633 mRNA sequence Length = 513 Score = 180 bits (91), Expect = 7e-42 Identities = 193/227 (85%) Strand = Plus / Plus Query: 431 catggaatttatagatttatgcggcatcctgggtattcaggctttcttctatgggcagtt 490 |||||| | ||||| |||||||| || ||||||||||| ||||||||| |||||||||| Sbjct: 16 catggactgtataggtttatgcgccaccctgggtattctggctttcttatatgggcagta 75 Query: 491 ggaacacaggttatgctgtgcaatccagtatctacagttttatttgcattggtgctgtgg 550 ||||| |||||||||||||| |||||| |||| |||||| ||| ||||||| ||||| Sbjct: 76 ggaacccaggttatgctgtgtaatccattatcaacagttgcattcacattggtcttgtgg 135 Query: 551 cgtttcttttcaaagcggataccatatgaagaatttttcttgaggcaattttttggctct 610 || ||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||||| Sbjct: 136 cgattcttttcaaaacggataccgtatgaagaatttttcttgaagcagttctttggctct 195 Query: 611 caatatgaagaatatgcaaggaaagtgcactcggggttaccatttat 657 |||| || ||||||||| || ||| ||||| || |||||||||| Sbjct: 196 gaatacgatgaatatgcacagagagtacactctggaataccatttat 242
>emb|CR855228.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence Length = 142564 Score = 172 bits (87), Expect = 2e-39 Identities = 198/235 (84%) Strand = Plus / Plus Query: 201 cacttcttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctga 260 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 134900 cacttcttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctga 134959 Query: 261 cagaaagccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttc 320 ||||| ||| ||||||| ||| | || | |||| |||||||||| || |||| | Sbjct: 134960 cagaagctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttag 135019 Query: 321 tgatggtgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcct 380 | |||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 135020 taatggtgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcct 135079 Query: 381 ttacacatgttatacggattcagtatgaagaccagcatcagttggtaactcatgg 435 |||| ||||||||| | ||||| ||||||||||| ||| || || | |||||||| Sbjct: 135080 ttacgcatgttataagaattcactatgaagaccaacataagctgattactcatgg 135134 Score = 133 bits (67), Expect = 1e-27 Identities = 112/127 (88%) Strand = Plus / Plus Query: 447 ttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacaggttatgc 506 ||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct: 135323 ttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccaggttatgt 135382 Query: 507 tgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttcttttcaaagc 566 |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||||||| | Sbjct: 135383 tgtgtaatccattatccacagttgcattcacattggtgctgtggcgattcttttcaaaac 135442 Query: 567 ggatacc 573 ||||||| Sbjct: 135443 ggatacc 135449 Score = 127 bits (64), Expect = 9e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||||||| ||| |||||||| |||||| |||||||||||| Sbjct: 133833 ccatggcggcgagggcgcaggcgtggctgttcgcggccgcgctggtcatcttccacggct 133892 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccac 198 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 133893 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccac 133944 Score = 85.7 bits (43), Expect = 3e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 575 tatgaagaatttttcttgaggcaattttttggctctcaatatgaagaatatgcaaggaaa 634 ||||||||||||||||| ||||| || ||||| | |||| |||||||| ||| |||| Sbjct: 135787 tatgaagaatttttcttaaggcagttctttggtcgtgaatacgaagaatacgcacagaaa 135846 Query: 635 gtgcactcggggttaccatttataaactgaatgtttcaaacttacaaagta 685 |||||||| || ||||| |||||| | |||| ||||||||||||||||||| Sbjct: 135847 gtgcactcaggattaccttttatagaatgaaagtttcaaacttacaaagta 135897
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 172 bits (87), Expect = 2e-39 Identities = 198/235 (84%) Strand = Plus / Plus Query: 201 cacttcttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctga 260 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 30463482 cacttcttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctga 30463541 Query: 261 cagaaagccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttc 320 ||||| ||| ||||||| ||| | || | |||| |||||||||| || |||| | Sbjct: 30463542 cagaagctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttag 30463601 Query: 321 tgatggtgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcct 380 | |||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 30463602 taatggtgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcct 30463661 Query: 381 ttacacatgttatacggattcagtatgaagaccagcatcagttggtaactcatgg 435 |||| ||||||||| | ||||| ||||||||||| ||| || || | |||||||| Sbjct: 30463662 ttacgcatgttataagaattcactatgaagaccaacataagctgattactcatgg 30463716 Score = 133 bits (67), Expect = 1e-27 Identities = 112/127 (88%) Strand = Plus / Plus Query: 447 ttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacaggttatgc 506 ||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct: 30463905 ttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccaggttatgt 30463964 Query: 507 tgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttcttttcaaagc 566 |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||||||| | Sbjct: 30463965 tgtgtaatccattatccacagttgcattcacattggtgctgtggcgattcttttcaaaac 30464024 Query: 567 ggatacc 573 ||||||| Sbjct: 30464025 ggatacc 30464031 Score = 127 bits (64), Expect = 9e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||||||| ||| |||||||| |||||| |||||||||||| Sbjct: 30462415 ccatggcggcgagggcgcaggcgtggctgttcgcggccgcgctggtcatcttccacggct 30462474 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccac 198 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 30462475 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccac 30462526 Score = 85.7 bits (43), Expect = 3e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 575 tatgaagaatttttcttgaggcaattttttggctctcaatatgaagaatatgcaaggaaa 634 ||||||||||||||||| ||||| || ||||| | |||| |||||||| ||| |||| Sbjct: 30464369 tatgaagaatttttcttaaggcagttctttggtcgtgaatacgaagaatacgcacagaaa 30464428 Query: 635 gtgcactcggggttaccatttataaactgaatgtttcaaacttacaaagta 685 |||||||| || ||||| |||||| | |||| ||||||||||||||||||| Sbjct: 30464429 gtgcactcaggattaccttttatagaatgaaagtttcaaacttacaaagta 30464479
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 172 bits (87), Expect = 2e-39 Identities = 198/235 (84%) Strand = Plus / Plus Query: 201 cacttcttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctga 260 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 96859 cacttcttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctga 96918 Query: 261 cagaaagccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttc 320 ||||| ||| ||||||| ||| | || | |||| |||||||||| || |||| | Sbjct: 96919 cagaagctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttag 96978 Query: 321 tgatggtgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcct 380 | |||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 96979 taatggtgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcct 97038 Query: 381 ttacacatgttatacggattcagtatgaagaccagcatcagttggtaactcatgg 435 |||| ||||||||| | ||||| ||||||||||| ||| || || | |||||||| Sbjct: 97039 ttacgcatgttataagaattcactatgaagaccaacataagctgattactcatgg 97093 Score = 133 bits (67), Expect = 1e-27 Identities = 112/127 (88%) Strand = Plus / Plus Query: 447 ttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacaggttatgc 506 ||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct: 97282 ttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccaggttatgt 97341 Query: 507 tgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttcttttcaaagc 566 |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||||||| | Sbjct: 97342 tgtgtaatccattatccacagttgcattcacattggtgctgtggcgattcttttcaaaac 97401 Query: 567 ggatacc 573 ||||||| Sbjct: 97402 ggatacc 97408 Score = 127 bits (64), Expect = 9e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||||||| ||| |||||||| |||||| |||||||||||| Sbjct: 95792 ccatggcggcgagggcgcaggcgtggctgttcgcggccgcgctggtcatcttccacggct 95851 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccac 198 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 95852 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccac 95903 Score = 85.7 bits (43), Expect = 3e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 575 tatgaagaatttttcttgaggcaattttttggctctcaatatgaagaatatgcaaggaaa 634 ||||||||||||||||| ||||| || ||||| | |||| |||||||| ||| |||| Sbjct: 97746 tatgaagaatttttcttaaggcagttctttggtcgtgaatacgaagaatacgcacagaaa 97805 Query: 635 gtgcactcggggttaccatttataaactgaatgtttcaaacttacaaagta 685 |||||||| || ||||| |||||| | |||| ||||||||||||||||||| Sbjct: 97806 gtgcactcaggattaccttttatagaatgaaagtttcaaacttacaaagta 97856
>dbj|AK065982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045J05, full insert sequence Length = 3491 Score = 172 bits (87), Expect = 2e-39 Identities = 198/235 (84%) Strand = Plus / Plus Query: 201 cacttcttatcagcaagcagtatgttttggcaatgagttttgcgatggcggaacacctga 260 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 1285 cacttcttatcagcaagcagtatgttttggcaatgagttttgcaatgttggaacacctga 1344 Query: 261 cagaaagccttttcttcccagaaataaaagggtatctgtttgtcagtaatattggccttc 320 ||||| ||| ||||||| ||| | || | |||| |||||||||| || |||| | Sbjct: 1345 cagaagctcttctcttccctgaattgaaggagtattggtttgtcagttatgttggtttag 1404 Query: 321 tgatggtgctttttggtgaaattattcgtaaaattgctgtcgtgacagctggacgtgcct 380 | |||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 1405 taatggtgattattggtgaagttattcgtaaacttgctgtggtgacagctgggcgttcct 1464 Query: 381 ttacacatgttatacggattcagtatgaagaccagcatcagttggtaactcatgg 435 |||| ||||||||| | ||||| ||||||||||| ||| || || | |||||||| Sbjct: 1465 ttacgcatgttataagaattcactatgaagaccaacataagctgattactcatgg 1519 Score = 133 bits (67), Expect = 1e-27 Identities = 112/127 (88%) Strand = Plus / Plus Query: 447 ttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacaggttatgc 506 ||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct: 1708 ttatgcgtcatcctgggtattctggctttcttatatgggcagtaggaacccaggttatgt 1767 Query: 507 tgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttcttttcaaagc 566 |||| |||||| |||| |||||| ||| |||||||||||||||| ||||||||||| | Sbjct: 1768 tgtgtaatccattatccacagttgcattcacattggtgctgtggcgattcttttcaaaac 1827 Query: 567 ggatacc 573 ||||||| Sbjct: 1828 ggatacc 1834 Score = 119 bits (60), Expect = 2e-23 Identities = 99/112 (88%) Strand = Plus / Plus Query: 87 ccatggcggcgcgggcacaggcgtggcagtttgcggccgccctggtcctcttccacggct 146 ||||||||||| |||| |||||| ||| ||| |||||||| |||||| |||||||||||| Sbjct: 218 ccatggcggcgagggcgcaggcgcggctgttcgcggccgcgctggtcatcttccacggct 277 Query: 147 ccgagtacatcctggccgccttcttccacggccaccgcaacgtcaccgccac 198 |||||||| |||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 278 ccgagtacgtcctcgccgcggccttccacggccgccgcaacgtcaccgccac 329 Score = 85.7 bits (43), Expect = 3e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 575 tatgaagaatttttcttgaggcaattttttggctctcaatatgaagaatatgcaaggaaa 634 ||||||||||||||||| ||||| || ||||| | |||| |||||||| ||| |||| Sbjct: 2172 tatgaagaatttttcttaaggcagttctttggtcgtgaatacgaagaatacgcacagaaa 2231 Query: 635 gtgcactcggggttaccatttataaactgaatgtttcaaacttacaaagta 685 |||||||| || ||||| |||||| | |||| ||||||||||||||||||| Sbjct: 2232 gtgcactcaggattaccttttatagaatgaaagtttcaaacttacaaagta 2282
>gb|AY112390.1| Zea mays CL38157_1 mRNA sequence Length = 912 Score = 54.0 bits (27), Expect = 0.001 Identities = 96/119 (80%) Strand = Plus / Minus Query: 446 tttatgcggcatcctgggtattcaggctttcttctatgggcagttggaacacaggttatg 505 |||||||| ||||||| |||||| |||||||| ||||| |||| ||||| || | | || Sbjct: 602 tttatgcgccatcctgagtattccagctttcttatatggacagtaggaacccaaggtttg 543 Query: 506 ctgtgcaatccagtatctacagttttatttgcattggtgctgtggcgtttcttttcaaa 564 ||||| |||| | |||| |||||| | | ||||||| ||||||| ||||||||||| Sbjct: 542 ctgtgtaatctaatatcaacagttgcactcacattggtcttgtggcgattcttttcaaa 484
>emb|AM176474.1| Anemia phyllitidis chloroplast partial atpA gene for putative alpha subunit of ATP synthase, specimen voucher Lankester s.n. (UC) Length = 1514 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 332 tttggtgaaattattcgtaaaa 353 |||||||||||||||||||||| Sbjct: 1417 tttggtgaaattattcgtaaaa 1438
>gb|AC090660.3| Homo sapiens chromosome 18, clone RP11-869O1, complete sequence Length = 195156 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 317 cttctgatggtgctttttggtg 338 |||||||||||||||||||||| Sbjct: 118213 cttctgatggtgctttttggtg 118234
>gb|AC011143.6|AC011143 Homo sapiens chromosome 18, clone RP11-1O15, complete sequence Length = 136492 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 317 cttctgatggtgctttttggtg 338 |||||||||||||||||||||| Sbjct: 128242 cttctgatggtgctttttggtg 128263
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence Length = 197615 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 atcctggccgccttcttccacg 176 |||||||||||||||||||||| Sbjct: 142799 atcctggccgccttcttccacg 142820
>ref|XM_001115642.1| PREDICTED: Macaca mulatta hypothetical protein LOC720310 (LOC720310), mRNA Length = 3309 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 797 aatacaaacctggaatttcat 817 ||||||||||||||||||||| Sbjct: 762 aatacaaacctggaatttcat 782
>ref|XM_001118034.1| PREDICTED: Macaca mulatta similar to succinate dehydrogenase complex, subunit C isoform 1 precursor, transcript variant 1 (LOC719978), mRNA Length = 3334 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 797 aatacaaacctggaatttcat 817 ||||||||||||||||||||| Sbjct: 2704 aatacaaacctggaatttcat 2684
>ref|XM_001118043.1| PREDICTED: Macaca mulatta similar to succinate dehydrogenase complex, subunit C isoform 1 precursor, transcript variant 3 (LOC719978), mRNA Length = 3453 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 797 aatacaaacctggaatttcat 817 ||||||||||||||||||||| Sbjct: 2823 aatacaaacctggaatttcat 2803
>ref|XM_001118037.1| PREDICTED: Macaca mulatta similar to succinate dehydrogenase complex, subunit C isoform 1 precursor, transcript variant 2 (LOC719978), mRNA Length = 3448 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 797 aatacaaacctggaatttcat 817 ||||||||||||||||||||| Sbjct: 2818 aatacaaacctggaatttcat 2798
>ref|XM_001118046.1| PREDICTED: Macaca mulatta similar to succinate dehydrogenase complex, subunit C isoform 1 precursor, transcript variant 4 (LOC719978), mRNA Length = 3510 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 797 aatacaaacctggaatttcat 817 ||||||||||||||||||||| Sbjct: 2880 aatacaaacctggaatttcat 2860
>ref|XM_001118052.1| PREDICTED: Macaca mulatta similar to succinate dehydrogenase complex, subunit C isoform 1 precursor, transcript variant 5 (LOC719978), mRNA Length = 3612 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 797 aatacaaacctggaatttcat 817 ||||||||||||||||||||| Sbjct: 2982 aatacaaacctggaatttcat 2962
>gb|AE009401.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 171 of 187 of the complete sequence Length = 11606 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ctgcccatggcggcgcgggca 103 ||||||||||||||||||||| Sbjct: 9822 ctgcccatggcggcgcgggca 9802
>gb|AE008213.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 17 of 187 of the complete sequence Length = 10731 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ctgcccatggcggcgcgggca 103 ||||||||||||||||||||| Sbjct: 1747 ctgcccatggcggcgcgggca 1767
>gb|AC116616.5| Homo sapiens BAC clone RP11-51M24 from 4, complete sequence Length = 94560 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 294 atctgtttgtcagtaatattggcct 318 |||||||||||||| |||||||||| Sbjct: 66004 atctgtttgtcagtgatattggcct 66028
>gb|AC104747.23| Mus musculus chromosome 1, clone RP23-248N10, complete sequence Length = 228588 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 571 accatatgaagaatttttctt 591 ||||||||||||||||||||| Sbjct: 142146 accatatgaagaatttttctt 142126 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 202,953,219 Number of extensions: 10318958 Number of successful extensions: 212239 Number of sequences better than 10.0: 23 Number of HSP's gapped: 212232 Number of HSP's successfully gapped: 37 Length of query: 1055 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1032 Effective length of database: 18,503,978,556 Effective search space: 19096105869792 Effective search space used: 19096105869792 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
