| Clone Name | FLbaf42g13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001048609.1| Oryza sativa (japonica cultivar-group) Os01g0158000 (Os01g0158000) mRNA, complete cds Length = 1864 Score = 159 bits (80), Expect = 2e-35 Identities = 208/250 (83%), Gaps = 3/250 (1%) Strand = Plus / Plus Query: 177 ccaccgctacgccatcaagtcctcagtgcacaatacggcagctagccggaggcgtgaaca 236 ||||||| | ||| ||||||| ||||||| ||| |||||||||||||||||||| ||||| Sbjct: 126 ccaccgcgaagccctcaagtcgtcagtgcgcaacacggcagctagccggaggcgggaaca 185 Query: 237 ggctatagcaatagggaaggaaagaagggaagccttaatgcgtgcaaagcgtgtgtgccg 296 ||||| || || |||||||||||| |||||||||| || ||||||||||||||||| || Sbjct: 186 agctattgcgattgggaaggaaagacgggaagccttgatccgtgcaaagcgtgtgtgtcg 245 Query: 297 tgccccactttctggcaacgatgaggctacaattgaagatggagatatggttat---tga 353 || ||| ||||||||| ||||| ||| ||| ||||| || |||||||| | ||| Sbjct: 246 agctccaatttctggcagtgatgaagctgaaatggaagagggtgatatggtggtcgatga 305 Query: 354 tgagaaagcagatattgaaacaagaactgctcaagctgttgaagaattgaaatcagcttt 413 ||||||||| | |||| ||| |||||||| |||||||||||||||||||| ||||| Sbjct: 306 ggagaaagcatgtcttgaggcaaagactgctcatgctgttgaagaattgaaatctgcttt 365 Query: 414 gtcaagccag 423 ||||| |||| Sbjct: 366 gtcaatccag 375 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 37 cctcgcggccgtcgagctccgccgccg 63
>dbj|AK103127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N19, full insert sequence Length = 1867 Score = 159 bits (80), Expect = 2e-35 Identities = 208/250 (83%), Gaps = 3/250 (1%) Strand = Plus / Plus Query: 177 ccaccgctacgccatcaagtcctcagtgcacaatacggcagctagccggaggcgtgaaca 236 ||||||| | ||| ||||||| ||||||| ||| |||||||||||||||||||| ||||| Sbjct: 129 ccaccgcgaagccctcaagtcgtcagtgcgcaacacggcagctagccggaggcgggaaca 188 Query: 237 ggctatagcaatagggaaggaaagaagggaagccttaatgcgtgcaaagcgtgtgtgccg 296 ||||| || || |||||||||||| |||||||||| || ||||||||||||||||| || Sbjct: 189 agctattgcgattgggaaggaaagacgggaagccttgatccgtgcaaagcgtgtgtgtcg 248 Query: 297 tgccccactttctggcaacgatgaggctacaattgaagatggagatatggttat---tga 353 || ||| ||||||||| ||||| ||| ||| ||||| || |||||||| | ||| Sbjct: 249 agctccaatttctggcagtgatgaagctgaaatggaagagggtgatatggtggtcgatga 308 Query: 354 tgagaaagcagatattgaaacaagaactgctcaagctgttgaagaattgaaatcagcttt 413 ||||||||| | |||| ||| |||||||| |||||||||||||||||||| ||||| Sbjct: 309 ggagaaagcatgtcttgaggcaaagactgctcatgctgttgaagaattgaaatctgcttt 368 Query: 414 gtcaagccag 423 ||||| |||| Sbjct: 369 gtcaatccag 378 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 40 cctcgcggccgtcgagctccgccgccg 66
>dbj|AK058679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H12, full insert sequence Length = 1766 Score = 159 bits (80), Expect = 2e-35 Identities = 208/250 (83%), Gaps = 3/250 (1%) Strand = Plus / Plus Query: 177 ccaccgctacgccatcaagtcctcagtgcacaatacggcagctagccggaggcgtgaaca 236 ||||||| | ||| ||||||| ||||||| ||| |||||||||||||||||||| ||||| Sbjct: 102 ccaccgcgaagccctcaagtcgtcagtgcgcaacacggcagctagccggaggcgggaaca 161 Query: 237 ggctatagcaatagggaaggaaagaagggaagccttaatgcgtgcaaagcgtgtgtgccg 296 ||||| || || |||||||||||| |||||||||| || ||||||||||||||||| || Sbjct: 162 agctattgcgattgggaaggaaagacgggaagccttgatccgtgcaaagcgtgtgtgtcg 221 Query: 297 tgccccactttctggcaacgatgaggctacaattgaagatggagatatggttat---tga 353 || ||| ||||||||| ||||| ||| ||| ||||| || |||||||| | ||| Sbjct: 222 agctccaatttctggcagtgatgaagctgaaatggaagagggtgatatggtggtcgatga 281 Query: 354 tgagaaagcagatattgaaacaagaactgctcaagctgttgaagaattgaaatcagcttt 413 ||||||||| | |||| ||| |||||||| |||||||||||||||||||| ||||| Sbjct: 282 ggagaaagcatgtcttgaggcaaagactgctcatgctgttgaagaattgaaatctgcttt 341 Query: 414 gtcaagccag 423 ||||| |||| Sbjct: 342 gtcaatccag 351 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 13 cctcgcggccgtcgagctccgccgccg 39
>dbj|D78504.1| Oryza sativa (japonica cultivar-group) mRNA, similar to yeast SRP1, complete cds Length = 1751 Score = 159 bits (80), Expect = 2e-35 Identities = 208/250 (83%), Gaps = 3/250 (1%) Strand = Plus / Plus Query: 177 ccaccgctacgccatcaagtcctcagtgcacaatacggcagctagccggaggcgtgaaca 236 ||||||| | ||| ||||||| ||||||| ||| |||||||||||||||||||| ||||| Sbjct: 77 ccaccgcgaagccctcaagtcgtcagtgcgcaacacggcagctagccggaggcgggaaca 136 Query: 237 ggctatagcaatagggaaggaaagaagggaagccttaatgcgtgcaaagcgtgtgtgccg 296 ||||| || || |||||||||||| |||||||||| || ||||||||||||||||| || Sbjct: 137 agctattgcgattgggaaggaaagacgggaagccttgatccgtgcaaagcgtgtgtgtcg 196 Query: 297 tgccccactttctggcaacgatgaggctacaattgaagatggagatatggttat---tga 353 || ||| ||||||||| ||||| ||| ||| ||||| || |||||||| | ||| Sbjct: 197 agctccaatttctggcagtgatgaagctgaaatggaagagggtgatatggtggtcgatga 256 Query: 354 tgagaaagcagatattgaaacaagaactgctcaagctgttgaagaattgaaatcagcttt 413 ||||||||| | |||| ||| |||||||| |||||||||||||||||||| ||||| Sbjct: 257 ggagaaagcatgtcttgaggcaaagactgctcatgctgttgaagaattgaaatctgcttt 316 Query: 414 gtcaagccag 423 ||||| |||| Sbjct: 317 gtcaatccag 326
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 151 bits (76), Expect = 4e-33 Identities = 192/230 (83%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 201 agtgcacaatacggcagctagccggaggcgtgaacaggctatagcaatagggaaggaaag 260 ||||| ||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| Sbjct: 3047263 agtgcgcaacacggcagctagccggaggcgggaacaagctattgcgattgggaaggaaag 3047322 Query: 261 aagggaagccttaatgcgtgcaaagcgtgtgtgccgtgccccactttctggcaacgatga 320 | |||||||||| || ||||||||||||||||| || || ||| ||||||||| ||||| Sbjct: 3047323 acgggaagccttgatccgtgcaaagcgtgtgtgtcgagctccaatttctggcagtgatga 3047382 Query: 321 ggctacaattgaagatggagatatggttat---tgatgagaaagcagatattgaaacaag 377 ||| ||| ||||| || |||||||| | ||| ||||||||| | |||| ||| Sbjct: 3047383 agctgaaatggaagagggtgatatggtggtcgatgaggagaaagcatgtcttgaggcaaa 3047442 Query: 378 aactgctcaagctgttgaagaattgaaatcagctttgtcaagccagtatg 427 |||||||| |||||||||||||||||||| |||||||||| |||||||| Sbjct: 3047443 gactgctcatgctgttgaagaattgaaatctgctttgtcaatccagtatg 3047492 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 3046468 cctcgcggccgtcgagctccgccgccg 3046494
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 151 bits (76), Expect = 4e-33 Identities = 192/230 (83%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 201 agtgcacaatacggcagctagccggaggcgtgaacaggctatagcaatagggaaggaaag 260 ||||| ||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| Sbjct: 128780 agtgcgcaacacggcagctagccggaggcgggaacaagctattgcgattgggaaggaaag 128839 Query: 261 aagggaagccttaatgcgtgcaaagcgtgtgtgccgtgccccactttctggcaacgatga 320 | |||||||||| || ||||||||||||||||| || || ||| ||||||||| ||||| Sbjct: 128840 acgggaagccttgatccgtgcaaagcgtgtgtgtcgagctccaatttctggcagtgatga 128899 Query: 321 ggctacaattgaagatggagatatggttat---tgatgagaaagcagatattgaaacaag 377 ||| ||| ||||| || |||||||| | ||| ||||||||| | |||| ||| Sbjct: 128900 agctgaaatggaagagggtgatatggtggtcgatgaggagaaagcatgtcttgaggcaaa 128959 Query: 378 aactgctcaagctgttgaagaattgaaatcagctttgtcaagccagtatg 427 |||||||| |||||||||||||||||||| |||||||||| |||||||| Sbjct: 128960 gactgctcatgctgttgaagaattgaaatctgctttgtcaatccagtatg 129009 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 127985 cctcgcggccgtcgagctccgccgccg 128011
>dbj|AB006788.1| Oryza sativa (japonica cultivar-group) gene for importin alpha, complete cds Length = 5125 Score = 151 bits (76), Expect = 4e-33 Identities = 192/230 (83%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 201 agtgcacaatacggcagctagccggaggcgtgaacaggctatagcaatagggaaggaaag 260 ||||| ||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| Sbjct: 1266 agtgcgcaacacggcagctagccggaggcgggaacaagctattgcgattgggaaggaaag 1325 Query: 261 aagggaagccttaatgcgtgcaaagcgtgtgtgccgtgccccactttctggcaacgatga 320 | |||||||||| || ||||||||||||||||| || || ||| ||||||||| ||||| Sbjct: 1326 acgggaagccttgatccgtgcaaagcgtgtgtgtcgagctccaatttctggcagtgatga 1385 Query: 321 ggctacaattgaagatggagatatggttat---tgatgagaaagcagatattgaaacaag 377 ||| ||| ||||| || |||||||| | ||| ||||||||| | |||| ||| Sbjct: 1386 agctgaaatggaagagggtgatatggtggtcgatgaggagaaagcatgtcttgaggcaaa 1445 Query: 378 aactgctcaagctgttgaagaattgaaatcagctttgtcaagccagtatg 427 |||||||| |||||||||||||||||||| |||||||||| |||||||| Sbjct: 1446 gactgctcatgctgttgaagaattgaaatctgctttgtcaatccagtatg 1495 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 471 cctcgcggccgtcgagctccgccgccg 497
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 151 bits (76), Expect = 4e-33 Identities = 192/230 (83%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 201 agtgcacaatacggcagctagccggaggcgtgaacaggctatagcaatagggaaggaaag 260 ||||| ||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| Sbjct: 15303 agtgcgcaacacggcagctagccggaggcgggaacaagctattgcgattgggaaggaaag 15362 Query: 261 aagggaagccttaatgcgtgcaaagcgtgtgtgccgtgccccactttctggcaacgatga 320 | |||||||||| || ||||||||||||||||| || || ||| ||||||||| ||||| Sbjct: 15363 acgggaagccttgatccgtgcaaagcgtgtgtgtcgagctccaatttctggcagtgatga 15422 Query: 321 ggctacaattgaagatggagatatggttat---tgatgagaaagcagatattgaaacaag 377 ||| ||| ||||| || |||||||| | ||| ||||||||| | |||| ||| Sbjct: 15423 agctgaaatggaagagggtgatatggtggtcgatgaggagaaagcatgtcttgaggcaaa 15482 Query: 378 aactgctcaagctgttgaagaattgaaatcagctttgtcaagccagtatg 427 |||||||| |||||||||||||||||||| |||||||||| |||||||| Sbjct: 15483 gactgctcatgctgttgaagaattgaaatctgctttgtcaatccagtatg 15532 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 14508 cctcgcggccgtcgagctccgccgccg 14534
>emb|CT830852.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA001O01, full insert sequence Length = 757 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 97 cctcgcagccgtcgagctccgccgccg 123 |||||| |||||||||||||||||||| Sbjct: 36 cctcgcggccgtcgagctccgccgccg 62
>gb|DQ508375.1| Synthetic construct codon-optimized L1 protein gene, complete cds Length = 1512 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 323 ctacaattgaagatggagatatggtt 348 |||||||||||||||| ||||||||| Sbjct: 587 ctacaattgaagatggtgatatggtt 612
>gb|AC163238.3| Colobus guereza clone CH272-90I19, complete sequence Length = 201245 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 545 aatatttgcctatttggttgtg 566 |||||||||||||||||||||| Sbjct: 169341 aatatttgcctatttggttgtg 169320
>ref|XM_420315.2| PREDICTED: Gallus gallus similar to Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1, transcript variant 2 (LOC422343), mRNA Length = 840 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 ggcaacgcccccggctcgccg 159 ||||||||||||||||||||| Sbjct: 140 ggcaacgcccccggctcgccg 120
>ref|XM_001234034.1| PREDICTED: Gallus gallus similar to Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1, transcript variant 1 (LOC422343), mRNA Length = 990 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 ggcaacgcccccggctcgccg 159 ||||||||||||||||||||| Sbjct: 179 ggcaacgcccccggctcgccg 159
>ref|XM_513285.2| PREDICTED: Pan troglodytes similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 5 (LOC456718), mRNA Length = 1508 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 991 gtggggagaagaattttcatt 1011
>ref|XM_001163251.1| PREDICTED: Pan troglodytes similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 1 (LOC456718), mRNA Length = 1965 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 596 gtggggagaagaattttcatt 616
>ref|XM_001163534.1| PREDICTED: Pan troglodytes similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 3 (LOC456718), mRNA Length = 1986 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 617 gtggggagaagaattttcatt 637
>ref|XM_001163312.1| PREDICTED: Pan troglodytes similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 2 (LOC456718), mRNA Length = 2018 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 649 gtggggagaagaattttcatt 669
>ref|XM_001163575.1| PREDICTED: Pan troglodytes similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 4 (LOC456718), mRNA Length = 2039 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 670 gtggggagaagaattttcatt 690
>ref|XM_001103742.1| PREDICTED: Macaca mulatta similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 3 (LOC708590), mRNA Length = 1940 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 791 gtggggagaagaattttcatt 811
>ref|XM_001103658.1| PREDICTED: Macaca mulatta similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 2 (LOC708590), mRNA Length = 1566 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 417 gtggggagaagaattttcatt 437
>emb|BX663521.11| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14, complete sequence Length = 179633 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 atcacaattcatcttgtaata 548 ||||||||||||||||||||| Sbjct: 80270 atcacaattcatcttgtaata 80250
>gb|AE002152.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 53 of 59 of the complete genome Length = 11966 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 aattgaagatggagatatggt 347 ||||||||||||||||||||| Sbjct: 3943 aattgaagatggagatatggt 3923
>ref|XM_859438.1| PREDICTED: Canis familiaris similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 5 (LOC478150), mRNA Length = 511 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 377 gtggggagaagaattttcatt 397
>ref|XM_535326.2| PREDICTED: Canis familiaris similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 1 (LOC478150), mRNA Length = 780 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 430 gtggggagaagaattttcatt 450
>ref|XM_859402.1| PREDICTED: Canis familiaris similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 4 (LOC478150), mRNA Length = 783 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 433 gtggggagaagaattttcatt 453
>ref|XM_859386.1| PREDICTED: Canis familiaris similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 3 (LOC478150), mRNA Length = 531 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 397 gtggggagaagaattttcatt 417
>ref|XM_859370.1| PREDICTED: Canis familiaris similar to zinc finger and BTB domain containing 8 opposite strand, transcript variant 2 (LOC478150), mRNA Length = 760 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 410 gtggggagaagaattttcatt 430
>gb|AY099494.1| Homo sapiens archease-like protein mRNA, partial cds Length = 623 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 342 gtggggagaagaattttcatt 362
>emb|AL160412.14| Human DNA sequence from clone RP5-827E24 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 111824 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cttaatgcgtgcaaagcgtgtgtgc 294 ||||||||||||||||||| ||||| Sbjct: 40584 cttaatgcgtgcaaagcgtctgtgc 40608
>emb|AL049591.12|HSJ878I13 Human DNA sequence from clone RP5-878I13 on chromosome Xq23-25 Contains an alpha tubulin pseudogene, complete sequence Length = 122400 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 acccactgccactaactagtt 489 ||||||||||||||||||||| Sbjct: 101269 acccactgccactaactagtt 101249
>emb|AL033529.25|HS27O5 Human DNA sequence from clone RP1-27O5 on chromosome 1p34.1-35.3 Contains the 3' end of the ZBTB8 gene for zinc finger and BTB domain containing 8, the 3' end of the gene for archease (ARCH) and two CpG islands, complete sequence Length = 147167 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 138685 gtggggagaagaattttcatt 138665
>emb|CR932804.1| Mus musculus chromosome 2, clone ResGen-475I1 strain 129/Sv, complete sequence Length = 127135 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 549 tttgcctatttggttgtggtgtgtg 573 ||||||||||||||| ||||||||| Sbjct: 48561 tttgcctatttggttttggtgtgtg 48585
>gb|BC058843.1| Homo sapiens zinc finger and BTB domain containing 8 opposite strand, mRNA (cDNA clone MGC:62007 IMAGE:6745279), complete cds Length = 600 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 359 gtggggagaagaattttcatt 379
>ref|NM_178547.2| Homo sapiens zinc finger and BTB domain containing 8 opposite strand (ZBTB8OS), mRNA gb|AY151084.1| Homo sapiens archease (ARCH) mRNA, complete cds; alternatively spliced Length = 717 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 gtggggagaagaattttcatt 599 ||||||||||||||||||||| Sbjct: 436 gtggggagaagaattttcatt 456
>emb|AL929034.17| Mouse DNA sequence from clone RP23-90F9 on chromosome 2, complete sequence Length = 161905 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 549 tttgcctatttggttgtggtgtgtg 573 ||||||||||||||| ||||||||| Sbjct: 93937 tttgcctatttggttttggtgtgtg 93961 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 123,884,973 Number of extensions: 8013383 Number of successful extensions: 284368 Number of sequences better than 10.0: 35 Number of HSP's gapped: 284368 Number of HSP's successfully gapped: 50 Length of query: 679 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 657 Effective length of database: 18,508,616,841 Effective search space: 12160161264537 Effective search space used: 12160161264537 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)