ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf38l02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK121439:Os04g0530200 39 0.003
2AK105586:Os04g0530200 39 0.003
3Os03g0145000:Os03g0145000 28 3.5
4AK108405: 28 4.6
5Os12g0127900:Os12g0127900 27 6.0
6AK109279:Os09g0376300 27 6.0

>AK121439:Os04g0530200 |
          Length = 72
 Score = 38.5 bits (88), Expect = 0.003
 Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 92  KDPLSLSP-SPTKKGREGMGGFQRQVKERTMEXXXXXXXXXXXXXDFG---KKTWNKVKA 259
           +D +S SP SP +K    MGGF  QVKER  E               G   KK WNKVK+
Sbjct: 13  RDQISFSPPSPIRKR---MGGFDLQVKERAKELKHLKGAVMKGVKVVGDSCKKAWNKVKS 69

Query: 260 IK 265
           IK
Sbjct: 70  IK 71



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>AK105586:Os04g0530200 |
          Length = 73

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 92  KDPLSLSP-SPTKKGREGMGGFQRQVKERTMEXXXXXXXXXXXXXDFG---KKTWNKVKA 259
           +D +S SP SP +K    MGGF  QVKER  E               G   KK WNKVK+
Sbjct: 14  RDQISFSPPSPIRKR---MGGFDLQVKERAKELKHLKGAVMKGVKVVGDSCKKAWNKVKS 70

Query: 260 IK 265
           IK
Sbjct: 71  IK 72



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>Os03g0145000:Os03g0145000 |
          Length = 1324

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 9    RRFRHATRQSASPFLVPSLPPP 74
            RR  HA R +ASP   PS PPP
Sbjct: 1032 RRRPHAVRAAASPASAPSGPPP 1053



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>AK108405: |
          Length = 287

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -2

Query: 432 SKTDPTNQITTTTGGKKNRSYQAVHEHRSYQAVHEPAMGLER------RKEADGRGDLTD 271
           S TD    + T T GK  +       H+++  +H+P+ GLE       +    G+ +LT 
Sbjct: 60  SATDTLKIVLTATEGKTGKK-----PHQAFLTLHDPSTGLEESFPFSLKDNGKGKVELTQ 114

Query: 270 QRL 262
           + L
Sbjct: 115 KDL 117



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>Os12g0127900:Os12g0127900 |
          Length = 239

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 82  SAAGGGKEGTRKGDADWR--VAW 20
           +A GGG  G  KG+ DWR  +AW
Sbjct: 75  AAGGGGGGGGAKGEMDWRLLLAW 97



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>AK109279:Os09g0376300 |
          Length = 168

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 97  ILPDRSAAGGGKEGTRKGDADWRVAWRNR 11
           +  D    GG   G+   D+DW + W+ +
Sbjct: 85  VASDDGGGGGWLSGSESDDSDWAIGWQEK 113


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 12,353,907
Number of extensions: 228439
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 6
Length of query: 173
Length of database: 15,399,855
Length adjustment: 94
Effective length of query: 79
Effective length of database: 11,636,001
Effective search space: 919244079
Effective search space used: 919244079
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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