>P65726:PKNA_MYCTU Probable serine/threonine-protein kinase pknA - Mycobacterium|
           tuberculosis
          Length = 431
 Score = 33.5 bits (75), Expect = 1.8
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -1

Query: 422 RHPEEASAPRPSR--PTAVPVGASDDAHGVAMAFGLDAEAYPTRPRAGGVNLQSTLWPSG 249
           R P  +  P P R  P A+P G +  A   A + G  A +  +RP  GG       + SG
Sbjct: 279 RPPRPSQTPPPGRAAPAAIPSGTT--ARVAANSAGRTAASRRSRPATGGHRPPRRTFSSG 336

Query: 248 ELFLLWM*GTAAGHSMV 198
           +  LLW  G     +++
Sbjct: 337 QRALLWAAGVLGALAII 353

>P65727:PKNA_MYCBO Probable serine/threonine-protein kinase pknA - Mycobacterium bovis|
          Length = 431

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -1

Query: 422 RHPEEASAPRPSR--PTAVPVGASDDAHGVAMAFGLDAEAYPTRPRAGGVNLQSTLWPSG 249
           R P  +  P P R  P A+P G +  A   A + G  A +  +RP  GG       + SG
Sbjct: 279 RPPRPSQTPPPGRAAPAAIPSGTT--ARVAANSAGRTAASRRSRPATGGHRPPRRTFSSG 336

Query: 248 ELFLLWM*GTAAGHSMV 198
           +  LLW  G     +++
Sbjct: 337 QRALLWAAGVLGALAII 353

>P05051:AMPR_ENTCL HTH-type transcriptional activator ampR - Enterobacter cloacae|
          Length = 291

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 228 VRYGGGAQHGLEMGGLPHQPEAAMTRRRSGQR*RPPAHNARHTIPRIHQR 79
           +RYGGGA HG E   L H P A +           PA   R T+ R ++R
Sbjct: 145 IRYGGGAWHGTEAEFLCHAPLAPLCTPDIAASLHSPADILRFTLLRSYRR 194

>P29772:OSA_SHIFL Protein osa - Shigella flexneri|
          Length = 189

 Score = 32.0 bits (71), Expect = 5.1
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +2

Query: 317 RRGRRPWLHRERRLMRRQALPSGVKGEAPRLLPDACRQEGLSLPANGHLHRRRVCRNAAS 496
           RR  R WL   RRL +  A  SG+  E P+++P+A  +    LP   H        NAA 
Sbjct: 6   RRRCRAWLEI-RRLDKELAQSSGLPLELPQIVPNAWNEVVWRLPVPNHPDAFMTASNAAQ 64

Query: 497 MLFFLW 514
             F ++
Sbjct: 65  SDFIVY 70

>Q9K4V0:NORR1_RALEH Nitric oxide reductase transcription regulator norR1 - Ralstonia|
           eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier
           337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM
           428 / Stanier 337))
          Length = 514

 Score = 31.6 bits (70), Expect = 6.7
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 642 SARPEIFSARSVLQLLLEQPGAQKTNILTRGAVFRRLLKMLLGQRKNNIEAALRHTLRR* 463
           S R ++F   SV  + +     +  ++L     F  L +  LG R   + AA +  LRR 
Sbjct: 339 SFRADLFHRLSVYPIPIPPLRERGNDVLLLAGRFLELNRARLGMRSLRLSAAAQDALRRY 398

Query: 462 RWP 454
           RWP
Sbjct: 399 RWP 401

>Q9D0U1:DTWD2_MOUSE DTW domain-containing protein 2 - Mus musculus (Mouse)|
          Length = 298

 Score = 31.6 bits (70), Expect = 6.7
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 449 PEVRGLLACRHP-EEASAPRPSRPTAVPVGASDDAHGVAMAFGLDAEAYPTRPRAG 285
           P   G LA   P EE      + PTA P GAS D+      +GL  E    RP  G
Sbjct: 15  PPPSGALASPTPDEEERTEGGAPPTATPAGASGDSTSADGLWGLPVEHAERRPECG 70

>O88508:DNM3A_MOUSE DNA - Mus musculus (Mouse)|
          Length = 908

 Score = 31.6 bits (70), Expect = 6.7
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +1

Query: 286 PALGRVGYASASRPKAMATP*ASSDAPTGTAVGREGRGAEASSGCLQARRPLTS 447
           PA G+ G A A        P AS     G  V +EGRGA A  G  Q +  + S
Sbjct: 103 PAAGQKGGAPAEGEGTETPPEASRAVENGCCVTKEGRGASAGEGKEQKQTNIES 156


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 202,196,595
Number of extensions: 4451711
Number of successful extensions: 12410
Number of sequences better than 10.0: 7
Number of HSP's gapped: 12398
Number of HSP's successfully gapped: 7
Length of query: 394
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 279
Effective length of database: 69,142,514
Effective search space: 19290761406
Effective search space used: 19290761406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)