ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf38k07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L19119.1|BLYA22S Hordeum vulgare abscisic acid and stress ind... 359 1e-95
2emb|AJ717740.1| Hordeum vulgare betaGAL1 gene, tRNA-Pro pseudoge... 86 3e-13
3gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete seq... 48 0.073
4gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome 44 1.1
5gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 44 1.1
6gb|AC120400.11| Mus musculus chromosome 1, clone RP24-351P4, com... 44 1.1
7gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, c... 44 1.1
8gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, com... 44 1.1
9gb|AC162365.5| Mus musculus chromosome 19, clone RP23-75P11, com... 44 1.1
10gb|AC118005.9| Mus musculus chromosome 19, clone RP23-318J14, co... 44 1.1
11ref|XM_001211532.1| Aspergillus terreus NIH2624 predicted protei... 42 4.5
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.5
13gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, com... 42 4.5
14dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.5
15dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.5
16gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 4.5
17emb|AJ289080.1|CAL289080 Candida albicans vps18 gene 42 4.5
18emb|AJ222584.1|CPEVPSBC Euglena viridis chloroplast partial psbC... 42 4.5
19ref|XM_722944.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 4.5

>gb|L19119.1|BLYA22S Hordeum vulgare abscisic acid and stress inducible (A22) gene
          Length = 3531
 Score =  359 bits (181), Expect = 1e-95
 Identities = 266/293 (90%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                        
Query: 521  agcatcttcaacaggcgcctaaaaactgctccgcgcgttaaaatattcgttttttgggcg 580
            ||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 1103 agcatctccaacaggcgcccaaaaactgttccgcgcgttaaaagattcgttttttaggcg 1044

                                                                        
Query: 581  ccgggctgctccagcagaagctgcaaaacgctgcgcgcactaaaaatttctgggcgcgcg 640
             | | |||||||||||||||||||||||| |||||||| ||||||| || ||||||||||
Sbjct: 1043 tcagactgctccagcagaagctgcaaaacactgcgcgcgctaaaaacttttgggcgcgcg 984

                                                                        
Query: 641  cttaaaaa-cgctatcgcgcgcagcatatttggtgcgccggcttgcgcgcgcaccaaact 699
            || ||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct: 983  ctcaaaaaacgctatcgcgcgcaacatatttggtgcgtcggcttgcgcgcgcagcaaact 924

                                                                        
Query: 700  ctgagcggctgcagatgggaccgctggatcagcgcggattgggcgccgcactagcgcgcg 759
            |||||||||||||||||||||||||||||| |   |||||| |||||||| |||||||||
Sbjct: 923  ctgagcggctgcagatgggaccgctggatcggactggattgagcgccgcagtagcgcgcg 864

                                                                 
Query: 760  tctgttggagatgcttcggtccccgcgctgtaaaactgctacagtggcgcgct 812
            ||||||||||||||| |||||||||||||  ||||||||||||||||| ||||
Sbjct: 863  tctgttggagatgctccggtccccgcgcttcaaaactgctacagtggcacgct 811



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>emb|AJ717740.1| Hordeum vulgare betaGAL1 gene, tRNA-Pro pseudogene, ORF_1 pseudogene
            and tnp2-like1 gene (partial)
          Length = 10640

 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                        
Query: 736  gattgggcgccgcactagcgcgcgtctgttggagatgcttcggtccccgcgctgtaaaac 795
            ||||||||| |||||||||||| |||||||| ||||| | ||||||||||||| ||||| 
Sbjct: 8404 gattgggcgtcgcactagcgcgtgtctgttgaagatgttccggtccccgcgctttaaaaa 8463

                           
Query: 796  tgctacagtggcgcg 810
            |||||||||| ||||
Sbjct: 8464 tgctacagtgacgcg 8478



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 665  atatttggtgcgccggcttgcgcgcgcaccaaactctgagcggctgcagatggg 718
            |||||||||||| | ||||||| || || ||||||||| || ||||||| ||||
Sbjct: 8343 atatttggtgcgtcagcttgcgggcacagcaaactctgggctgctgcaggtggg 8396



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>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence
          Length = 101101

 Score = 48.1 bits (24), Expect = 0.073
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 661   cagcatatttggtgcgccggcttgcgcgcgcaccaaactctgagcggctgcagatgggac 720
             |||||||||| ||| ||| | | | ||||||  ||||||||| || ||||||||||||||
Sbjct: 74646 cagcatatttagtgggcccggtcgtgcgcgctgcaaactctgggctgctgcagatgggac 74705

                 
Query: 721   cgct 724
             ||||
Sbjct: 74706 cgct 74709



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>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome
          Length = 9965640

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 725     ggatcagcgcggattgggcgcc 746
               ||||||||||||||||||||||
Sbjct: 5505061 ggatcagcgcggattgggcgcc 5505082



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>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 742    gcgccgcactagcgcgcgtctgttggagat 771
              ||||||| ||||||||||||||||| ||||
Sbjct: 113361 gcgccgcgctagcgcgcgtctgttgaagat 113332



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>gb|AC120400.11| Mus musculus chromosome 1, clone RP24-351P4, complete sequence
          Length = 144055

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1036  ctagaattaaattaatttttaa 1057
             ||||||||||||||||||||||
Sbjct: 33044 ctagaattaaattaatttttaa 33023



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>gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, complete sequence
          Length = 217334

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 991   taagtgacggttgctaaactccacaa 1016
             ||||||| ||||||||||||||||||
Sbjct: 92262 taagtgatggttgctaaactccacaa 92287



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>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence
          Length = 182640

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1036   ctagaattaaattaatttttaa 1057
              ||||||||||||||||||||||
Sbjct: 179845 ctagaattaaattaatttttaa 179824



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>gb|AC162365.5| Mus musculus chromosome 19, clone RP23-75P11, complete sequence
          Length = 157286

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1036  ctagaattaaattaatttttaa 1057
             ||||||||||||||||||||||
Sbjct: 41288 ctagaattaaattaatttttaa 41267



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>gb|AC118005.9| Mus musculus chromosome 19, clone RP23-318J14, complete sequence
          Length = 195212

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1036 ctagaattaaattaatttttaa 1057
            ||||||||||||||||||||||
Sbjct: 5079 ctagaattaaattaatttttaa 5100



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>ref|XM_001211532.1| Aspergillus terreus NIH2624 predicted protein (ATEG_02354) mRNA,
           complete cds
          Length = 1758

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 481 ccgcaacgccgcttctatgtt 501
           |||||||||||||||||||||
Sbjct: 513 ccgcaacgccgcttctatgtt 533



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 514      gcctaagagcatcttcaacag 534
                |||||||||||||||||||||
Sbjct: 29370546 gcctaagagcatcttcaacag 29370526



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>gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, complete sequence
          Length = 239105

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 691    caccaaactctgagcggctgcagat 715
              ||||||||||||| |||||||||||
Sbjct: 128869 caccaaactctgaccggctgcagat 128845



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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0692C11
          Length = 169562

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 514    gcctaagagcatcttcaacag 534
              |||||||||||||||||||||
Sbjct: 149409 gcctaagagcatcttcaacag 149389



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>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F09
          Length = 138277

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 514   gcctaagagcatcttcaacag 534
             |||||||||||||||||||||
Sbjct: 65608 gcctaagagcatcttcaacag 65588



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    gaggccgcccatctccagacc 201
              |||||||||||||||||||||
Sbjct: 620463 gaggccgcccatctccagacc 620483



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>emb|AJ289080.1|CAL289080 Candida albicans vps18 gene
          Length = 4962

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 946  gagggtatttataccctagta 966
            |||||||||||||||||||||
Sbjct: 4862 gagggtatttataccctagta 4842



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>emb|AJ222584.1|CPEVPSBC Euglena viridis chloroplast partial psbC gene & internal mat2 gene
            containing complete internal group II introns 2d & 2e
          Length = 3411

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1039 gaattaaattaatttttaaca 1059
            |||||||||||||||||||||
Sbjct: 192  gaattaaattaatttttaaca 172



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>ref|XM_722944.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07220)
            partial mRNA
          Length = 484

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1037 tagaattaaattaatttttaa 1057
            |||||||||||||||||||||
Sbjct: 105  tagaattaaattaatttttaa 125


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 170,226,236
Number of extensions: 8758908
Number of successful extensions: 161235
Number of sequences better than 10.0: 19
Number of HSP's gapped: 161234
Number of HSP's successfully gapped: 20
Length of query: 1184
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1161
Effective length of database: 18,503,978,556
Effective search space: 21483119103516
Effective search space used: 21483119103516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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