>gb|DQ333455.1| Campylobacter coli isolate 596 CmeB (cmeB) gene, complete cds
          Length = 3123
 Score = 52.0 bits (26), Expect = 0.004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 927  tcttgcatatttaaattaaaatgctt 952
            ||||||||||||||||||||||||||
Sbjct: 2216 tcttgcatatttaaattaaaatgctt 2191

>gb|AY598796.4| Campylobacter coli strain CIT 382 CmeR (cmeR) gene, complete cds;
            efflux pump gene cluster, complete sequence; and CmeU
            gene, complete cds
          Length = 6698

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 927  tcttgcatatttaaattaaaatgctt 952
            ||||||||||||||||||||||||||
Sbjct: 4046 tcttgcatatttaaattaaaatgctt 4021

>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 48.1 bits (24), Expect = 0.062
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 913   ttgctctgtgatgttcttgcatatttaa 940
             ||||||| ||||||||||||||||||||
Sbjct: 97411 ttgctctttgatgttcttgcatatttaa 97438

>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A),
             NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C
             (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete
             cds
          Length = 73617

 Score = 48.1 bits (24), Expect = 0.062
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 913   ttgctctgtgatgttcttgcatatttaa 940
             ||||||| ||||||||||||||||||||
Sbjct: 35767 ttgctctttgatgttcttgcatatttaa 35794

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.062
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 913      ttgctctgtgatgttcttgcatatttaa 940
                ||||||| ||||||||||||||||||||
Sbjct: 26384283 ttgctctttgatgttcttgcatatttaa 26384310



 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 479      gggccccgaccccacctgtca 499
                |||||||||||||||||||||
Sbjct: 17464631 gggccccgaccccacctgtca 17464611

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 46.1 bits (23), Expect = 0.24
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 284    cctcccggagctccgcctcctaccggg 310
              |||||||||||||||||||| ||||||
Sbjct: 838859 cctcccggagctccgcctccaaccggg 838885

>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 44.1 bits (22), Expect = 0.97
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 617    ttgtgaatatttcttttataga 638
              ||||||||||||||||||||||
Sbjct: 183915 ttgtgaatatttcttttataga 183894

>emb|CR392001.6| Zebrafish DNA sequence from clone DKEY-70B24 in linkage group 14,
             complete sequence
          Length = 182769

 Score = 44.1 bits (22), Expect = 0.97
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 745   tttcattatgtgttcacattctgaaa 770
             |||||||| |||||||||||||||||
Sbjct: 48390 tttcattaagtgttcacattctgaaa 48365

>ref|XM_422264.2| PREDICTED: Gallus gallus similar to Tudor domain-containing protein 5
            (LOC424421), mRNA
          Length = 2493

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 909  agctttgctctgtgatgttcttgca 933
            ||||||||| |||||||||||||||
Sbjct: 1123 agctttgctgtgtgatgttcttgca 1147

>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence
          Length = 2646969

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 372    gccgtcctggcgaacgccggcgtcgacgccctt 404
              |||||||| ||||| |||||| |||||||||||
Sbjct: 485918 gccgtcctcgcgaatgccggcctcgacgccctt 485886

>gb|DQ470897.1| Lindra thalassiae isolate AFTOL-ID 413 RNA polymerase II subunit 2
           (RPB2) gene, partial sequence
          Length = 1025

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 932 catatttaaattaaaatgctt 952
           |||||||||||||||||||||
Sbjct: 93  catatttaaattaaaatgctt 73

>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 479   gggccccgaccccacctgtca 499
             |||||||||||||||||||||
Sbjct: 58645 gggccccgaccccacctgtca 58625

>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 283   ccctcccggagctccgcctcc 303
             |||||||||||||||||||||
Sbjct: 47219 ccctcccggagctccgcctcc 47239

>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence
          Length = 150889

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 735   ttggtatcattttcattatgtgttc 759
             |||||||||| ||||||||||||||
Sbjct: 29981 ttggtatcatattcattatgtgttc 30005

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 474     caggtgggccccgaccccacctgtcagtg 502
               |||||||||||||  ||||||||||||||
Sbjct: 1103698 caggtgggccccgggcccacctgtcagtg 1103670

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 377      cctggcgaacgccggcgtcga 397
                |||||||||||||||||||||
Sbjct: 13590125 cctggcgaacgccggcgtcga 13590105

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 283      ccctcccggagctccgcctcc 303
                |||||||||||||||||||||
Sbjct: 20048894 ccctcccggagctccgcctcc 20048914

>gb|AC099476.6| Rattus norvegicus  BAC CH230-159G8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 208229

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 616    gttgtgaatatttcttttata 636
              |||||||||||||||||||||
Sbjct: 124616 gttgtgaatatttcttttata 124636

>emb|X54318.1|BJCOXAG B.japonicum coxA gene for cytochrome aa(3) subunit I (EC 1.9.3.1)
          Length = 1830

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  ctggcgaacgccggcgtcgac 398
            |||||||||||||||||||||
Sbjct: 1330 ctggcgaacgccggcgtcgac 1350

>emb|X54800.1|BJCOXA B.japonicum coxA gene for subunit I of cytochrome c oxidase
            (EC_number=1.9.3.1)
          Length = 2000

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  ctggcgaacgccggcgtcgac 398
            |||||||||||||||||||||
Sbjct: 1227 ctggcgaacgccggcgtcgac 1247

>emb|AJ242592.1|BJA242592 Bradyrhizobium japonicum coxB, coxA, coxE, coxF, coxG, coxC, shb1
            genes, partial tldD gene and ORFs 133 and 177
          Length = 8121

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  ctggcgaacgccggcgtcgac 398
            |||||||||||||||||||||
Sbjct: 3603 ctggcgaacgccggcgtcgac 3623

>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 474   caggtgggccccgaccccacctgtcagtg 502
             |||||||||||||  ||||||||||||||
Sbjct: 16935 caggtgggccccgggcccacctgtcagtg 16907

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 378     ctggcgaacgccggcgtcgac 398
               |||||||||||||||||||||
Sbjct: 1290909 ctggcgaacgccggcgtcgac 1290929

>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0084P08
          Length = 158656

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   cctggcgaacgccggcgtcga 397
             |||||||||||||||||||||
Sbjct: 57744 cctggcgaacgccggcgtcga 57724

>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_B05
          Length = 144799

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 474    caggtgggccccgaccccacctgtcagtg 502
              |||||||||||||  ||||||||||||||
Sbjct: 132225 caggtgggccccgggcccacctgtcagtg 132197

>gb|U33883.2|BJU33883 Bradyrhizobium japonicum putative epoxide hydrolase EphB (ephB),
             putative stress-induced protein Ohr (ohr), putative
             transmembrane transcriptional regulator protein TtrR
             (ttrR), putative two-component system transcriptional
             response regulator TcsR (tcsR), integral inner membrane
             metabolite transport protein MtbA (mtbA), orf157, and
             orf235 genes, complete cds; Fo ATPase operon, complete
             sequence; probable acetyltransferase PacT (pacT),
             mitochondrial processing peptidase-like protein Mpp (mpp),
             threonine synthase ThrC (thrC), two-component system
             transcriptional regulator ElmR (elmR), putative
             two-component system sensor histidine kinase ElmS (elmS),
             SUR1-like protein (shb1), and orf133 genes, complete cds;
             cox operon, complete sequence; orf177, TldD (tldD), signal
             peptidase SipS (sipS), and orf375 genes, complete cds; and
             putative glutathione synthetase GshA (gshA) gene, partial
             cds
          Length = 31495

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   ctggcgaacgccggcgtcgac 398
             |||||||||||||||||||||
Sbjct: 23447 ctggcgaacgccggcgtcgac 23427

>emb|CR523986.1| Gallus gallus finished cDNA, clone ChEST708a14
          Length = 1302

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 909 agctttgctctgtgatgttcttgca 933
           ||||||||| |||||||||||||||
Sbjct: 57  agctttgctgtgtgatgttcttgca 81

>gb|BC091713.1| Xenopus laevis hypothetical protein MGC84994, mRNA (cDNA clone
           MGC:84994 IMAGE:6325353), complete cds
          Length = 935

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 620 tgaatatttcttttatagaaa 640
           |||||||||||||||||||||
Sbjct: 718 tgaatatttcttttatagaaa 698


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 151,733,499
Number of extensions: 8167816
Number of successful extensions: 181113
Number of sequences better than 10.0: 28
Number of HSP's gapped: 181113
Number of HSP's successfully gapped: 29
Length of query: 1011
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 988
Effective length of database: 18,503,978,556
Effective search space: 18281930813328
Effective search space used: 18281930813328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)