ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf48b01 |
|---|---|
| Clone Library Name | barley_pub |
>Q652F9:GUN17_ORYSJ Endoglucanase 17 precursor - Oryza sativa subsp. japonica (Rice)| Length = 497 Score = 34.3 bits (77), Expect = 0.76 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Frame = +3 Query: 63 MAAAAGLVWVTLLMCVALGAGQLDRA-SIQKALVAAFFP---EGSLPPPVRIYCREDAAL 230 MAAA G V + +L GQ D + ++ K+++ FF G LPP R+ R D+AL Sbjct: 1 MAAAGGAVLLLVLATATSVTGQHDYSDALHKSIL--FFEGQRSGRLPPDQRLRWRRDSAL 58 Query: 231 NVGIDGNNNVVLVNADCSDLSQKWFPVYIRSSL 329 N G ++ D D + FP+ ++L Sbjct: 59 NDGATAGVDLTGGYYDAGDNVKFGFPMAFTATL 91
>Q9BYQ5:KR415_HUMAN Keratin-associated protein 4-15 - Homo sapiens (Human)| Length = 193 Score = 33.9 bits (76), Expect = 1.0 Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Frame = -1 Query: 387 PETSAHSSERRACAQSLRCPRTSGCTQGTISVTSHC------SRRLRGQHCCCRLCPRSA 226 P S R C QS+ C T C + + S++S C SR R Q C C + Sbjct: 70 PSCCVSSCCRPQCCQSVCCQPT--CCRPSCSISSCCRPSCCVSRCCRSQCCQSVCCQPTC 127 Query: 225 RRPPCSISSRAAAGNLQGRRRQPKLSG--CSPDQVARRRAQHT*ARSPKLSLQLRPLPL 55 RP C ISS + +P C V R + HT P + P PL Sbjct: 128 CRPSCCISSCCRPSCCESSCCRPCCCRPCCCLRPVCGRVSCHTTCYRPTCVISTCPRPL 186
>Q8DGW0:SYT_SYNEL Threonyl-tRNA synthetase - Synechococcus elongatus| (Thermosynechococcus elongatus) Length = 605 Score = 33.1 bits (74), Expect = 1.7 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -2 Query: 233 VQRGVLPAVYPHGRRQGTFREEGGNQSFL-DARPIKLPGAERNTHEQG 93 ++RG LP V PH R F+ G Q + D P+ AE HEQG Sbjct: 239 LKRGYLPVVTPHIARVDLFKTSGHWQKYKEDMFPLMAEDAEAAAHEQG 286
>P83105:HTRA4_HUMAN Probable serine protease HTRA4 precursor - Homo sapiens (Human)| Length = 476 Score = 33.1 bits (74), Expect = 1.7 Identities = 24/73 (32%), Positives = 27/73 (36%) Frame = -1 Query: 354 ACAQSLRCPRTSGCTQGTISVTSHCSRRLRGQHCCCRLCPRSARRPPCSISSRAAAGNLQ 175 A Q RCP C GT V C CCR+CP +A R C G Q Sbjct: 42 AVCQPTRCPALPTCALGTTPVFDLCR--------CCRVCP-AAEREVC--------GGAQ 84 Query: 174 GRRRQPKLSGCSP 136 G+ P L P Sbjct: 85 GQPCAPGLQCLQP 97
>Q9R3W3:SIRC_SALTY Transcriptional regulator sirC - Salmonella typhimurium| Length = 295 Score = 30.8 bits (68), Expect(2) = 2.1 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Frame = +3 Query: 765 YSFPYLMSSFIK----FPFC*SSSNVSTTEFIYDIIISNNCSGWS 887 +S YL+S+F++ F F + ++T E +Y+IIIS+ WS Sbjct: 166 FSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWS 210 Score = 20.8 bits (42), Expect(2) = 2.1 Identities = 11/28 (39%), Positives = 11/28 (39%) Frame = +2 Query: 662 YFIDNKLLPLMSYNLQESTPGCACSYDC 745 YF LLP MS G AC C Sbjct: 126 YFFHADLLPGMSDTFDSILHGVACPRVC 153
>Q8Z4A6:SIRC_SALTI Transcriptional regulator sirC - Salmonella typhi| Length = 295 Score = 30.8 bits (68), Expect(2) = 2.1 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Frame = +3 Query: 765 YSFPYLMSSFIK----FPFC*SSSNVSTTEFIYDIIISNNCSGWS 887 +S YL+S+F++ F F + ++T E +Y+IIIS+ WS Sbjct: 166 FSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWS 210 Score = 20.8 bits (42), Expect(2) = 2.1 Identities = 11/28 (39%), Positives = 11/28 (39%) Frame = +2 Query: 662 YFIDNKLLPLMSYNLQESTPGCACSYDC 745 YF LLP MS G AC C Sbjct: 126 YFFHADLLPGMSDTFDSILHGVACPRVC 153
>Q4U2R1:HERC2_MOUSE Probable E3 ubiquitin-protein ligase HERC2 - Mus musculus (Mouse)| Length = 4836 Score = 32.7 bits (73), Expect = 2.2 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 51 TPTAMAAAAGLVWVTLLMCVALGAGQLDRASIQKALVAAFFPEGSLP 191 TP A A + W+TLLM V G AS+Q+ ++A + LP Sbjct: 2037 TPQACGALSSPRWITLLMKVVEGHAPFTAASLQRQILAVHLLQAVLP 2083
>Q5M7X9:CA166_DANRE RING finger protein C1orf166 homolog - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 341 Score = 32.0 bits (71), Expect = 3.8 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -3 Query: 511 SGVHSCLLASCSHVLTSNRVVGGLDSPTFCPVLRDHVGMVM 389 S C+L C HV R L P FCP+ R H+ V+ Sbjct: 297 SNPRGCVLLDCGHVCCCFRCYQALPQP-FCPICRQHIKRVV 336
>Q9BYQ7:KR410_HUMAN Keratin-associated protein 4-10 - Homo sapiens (Human)| Length = 127 Score = 32.0 bits (71), Expect = 3.8 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = -1 Query: 351 CAQSLRCPR--TSGCTQGTISVTSHCSRRLRGQHCCCRLCPRSARRPPCSISS 199 C + CP S C + + S T+ C CC +C ++ RP C +SS Sbjct: 30 CQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPVCCQTTCRPSCGVSS 82
>Q9BQ66:KR412_HUMAN Keratin-associated protein 4-12 - Homo sapiens (Human)| Length = 201 Score = 31.6 bits (70), Expect = 5.0 Identities = 34/120 (28%), Positives = 41/120 (34%), Gaps = 9/120 (7%) Frame = -1 Query: 387 PETSAHSSERRACAQSLRCPRTS---GCTQGTISVTSHC------SRRLRGQHCCCRLCP 235 P S R C QS+ C T C Q T T+ C S R Q C C Sbjct: 78 PSCCVSSCCRPQCCQSVCCQPTCCRPSCCQTTCCRTTCCRPSCCVSSCCRPQCCQSVCCQ 137 Query: 234 RSARRPPCSISSRAAAGNLQGRRRQPKLSGCSPDQVARRRAQHT*ARSPKLSLQLRPLPL 55 + RP C ISS + +P C V R + HT P + P PL Sbjct: 138 PTCCRPSCCISSSCCPSCCESSCCRP---CCCLRPVCGRVSCHTTCYRPTCVISTCPRPL 194
>Q96JH7:VCIP1_HUMAN Deubiquitinating protein VCIP135 - Homo sapiens (Human)| Length = 1222 Score = 31.2 bits (69), Expect = 6.5 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -1 Query: 237 PRSARRPPCSISSRAAAGNLQGRRRQPKLSGCSPDQVARRR 115 P A + P S++S AA+G L RR + LSG PD + R Sbjct: 17 PPEAPQTPSSLASAAASGGLLKRRDRRILSGSCPDPKCQAR 57
>O89019:INVS_MOUSE Inversin - Mus musculus (Mouse)| Length = 1062 Score = 31.2 bits (69), Expect = 6.5 Identities = 30/103 (29%), Positives = 38/103 (36%) Frame = -1 Query: 321 SGCTQGTISVTSHCSRRLRGQHCCCRLCPRSARRPPCSISSRAAAGNLQGRRRQPKLSGC 142 S QGT SV G+H C P SAR+P C+ S R A K Sbjct: 716 SSKNQGTSSVEKRRGET-NGKHRRCEEGPSSARQPLCTGSGRPA----------EKGEDS 764 Query: 141 SPDQVARRRAQHT*ARSPKLSLQLRPLPLAYKRRVQALVDLAS 13 SP + + H + + RP + KRR L D S Sbjct: 765 SPAVASASQQDHPRKPNKRQDRAARPRGASQKRRTHQLRDRCS 807
>P33640:RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D - Pseudomonas| aeruginosa Length = 320 Score = 30.8 bits (68), Expect = 8.4 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +2 Query: 422 TEGGTV*PADHPIAGQHVAARSKQAAVDAGE-AHTHRRLLQ 541 T GGT+ D PI G+H R K A VDAG+ A +H R+L+ Sbjct: 179 TSGGTI---DAPI-GRHGVQRQKMAVVDAGKVAVSHYRVLE 215 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 171,315,433 Number of extensions: 3832703 Number of successful extensions: 10587 Number of sequences better than 10.0: 13 Number of HSP's gapped: 10570 Number of HSP's successfully gapped: 15 Length of query: 318 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 205 Effective length of database: 69,691,104 Effective search space: 14286676320 Effective search space used: 14286676320 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
