ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf47o19 |
|---|---|
| Clone Library Name | barley_pub |
>O24493:MC1_PINRA Male-cone protein 1 precursor - Pinus radiata (Monterey pine)| Length = 92 Score = 38.5 bits (88), Expect = 0.036 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = +2 Query: 371 CGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKANLSCICRYKGIAGIWLRMYHIDAKR 550 C + D+ C A +++ PS+ECC AL + SC+C+ + Sbjct: 28 CSNAMDKLAPCTSAVGLSSNGVKPSSECCDALKGTSTSCVCK--------------SVRA 73 Query: 551 AMALPGKCGL 580 ++LP KC L Sbjct: 74 VISLPAKCNL 83
>O24356:MEN8_SILLA Protein MEN-8 precursor - Silene latifolia (White campion) (Bladder| campion) Length = 100 Score = 38.1 bits (87), Expect = 0.047 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = +2 Query: 353 EGVHGVCGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKANLSCICRYKGIA 511 E G C +C P NPS ECCAAL N C+C +A Sbjct: 32 EAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGVNHDCMCNTLRVA 84
>O23810:YY1_ORYSJ YY1 protein precursor - Oryza sativa subsp. japonica (Rice)| Length = 95 Score = 34.3 bits (77), Expect = 0.68 Identities = 20/57 (35%), Positives = 23/57 (40%) Frame = +2 Query: 410 AAAVNNPTENPSAECCAALGKANLSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGL 580 A A P P AECC+ALG + C C I +LP KCGL Sbjct: 47 APAPGQPLPAPPAECCSALGAVSHDCACGTLDIIN--------------SLPAKCGL 89
>Q42978:NLTP2_ORYSA Nonspecific lipid-transfer protein 2 precursor - Oryza sativa| (Rice) Length = 118 Score = 32.3 bits (72), Expect = 2.6 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%) Frame = +2 Query: 371 CGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKAN----------LSCICRYKGIAGIW 520 CG N C A + PSA CC+ + N +C C K +AG Sbjct: 30 CGQVNSAVSPCLSYARGGS---GPSAACCSGVRSLNSAASTTADRRTACNC-LKNVAG-- 83 Query: 521 LRMYHIDAKRAMALPGKCGLTMPNNCS 601 + ++A A ++P KCG+++P S Sbjct: 84 -SISGLNAGNAASIPSKCGVSIPYTIS 109
>P47904:RS27_XENLA 40S ribosomal protein S27 - Xenopus laevis (African clawed frog)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q71TY3:RS27_RAT 40S ribosomal protein S27 - Rattus norvegicus (Rat)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q5RBK1:RS27_PONPY 40S ribosomal protein S27 - Pongo pygmaeus (Orangutan)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q6ZWU9:RS27_MOUSE 40S ribosomal protein S27 - Mus musculus (Mouse)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>P42677:RS27_HUMAN 40S ribosomal protein S27 - Homo sapiens (Human)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q2KHT7:RS27_BOVIN 40S ribosomal protein S27 - Bos taurus (Bovine)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>P24051:RS27L_RAT 40S ribosomal protein S27-like protein - Rattus norvegicus (Rat)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q6ZWY3:RS27L_MOUSE 40S ribosomal protein S27-like protein - Mus musculus (Mouse)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q71UM5:RS27L_HUMAN 40S ribosomal protein S27-like protein - Homo sapiens (Human)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>Q3T0B7:RS27L_BOVIN 40S ribosomal protein S27-like protein - Bos taurus (Bovine)| Length = 84 Score = 32.0 bits (71), Expect = 3.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +1 Query: 295 VTCIGCNTVACH--GGVPRRIRGCSWR 369 V C+GC+TV C GG R GCS+R Sbjct: 54 VLCVGCSTVLCQPTGGKARLTEGCSFR 80
>O23758:NLTP_CICAR Nonspecific lipid-transfer protein precursor - Cicer arietinum| (Chickpea) (Garbanzo) Length = 116 Score = 31.6 bits (70), Expect = 4.4 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%) Frame = +2 Query: 440 PSAECCAALGKAN----------LSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGLTMP 589 PSA+CC + N +C C K AG R+ +A A ALPGKC + +P Sbjct: 47 PSAQCCGGVRNLNSAAVTTPDRQAACNC-LKSAAGSISRL---NANNAAALPGKCVVNIP 102 Query: 590 NNCS 601 S Sbjct: 103 YKIS 106
>Q40189:M6_LILHE M6 protein - Lilium henryi (Henry's lily)| Length = 78 Score = 31.2 bits (69), Expect = 5.7 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 425 NPTENPSAECCAALGKANLSCIC 493 N PSAECC++L N C+C Sbjct: 6 NNLVTPSAECCSSLSAVNTGCLC 28
>Q9N2M8:HDC_DROME Headcase protein [Contains: Headcase short protein] - Drosophila| melanogaster (Fruit fly) Length = 1080 Score = 31.2 bits (69), Expect = 5.7 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Frame = +1 Query: 55 PLHYVASSHGRPLLCSRVRPFLRRRHPHAQQ------QKQQDGCARFPGQEGRQRTRHSQ 216 PL+ A + PL ++ P L HPHAQQ Q+QQ + P Q+ +Q+ + +Q Sbjct: 695 PLYNAAIDYSAPLQ-QQINPDLIGAHPHAQQHQQQVRQQQQQQQQQQPQQQQQQQQQQTQ 753 Query: 217 SK 222 + Sbjct: 754 QQ 755
>P19656:NLTP_MAIZE Nonspecific lipid-transfer protein precursor - Zea mays (Maize)| Length = 120 Score = 30.8 bits (68), Expect = 7.5 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%) Frame = +2 Query: 440 PSAECCAALGKAN----------LSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGLTMP 589 PSA CC+ + N +C C AG+ ++A A ++P KCG+++P Sbjct: 52 PSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV----SGLNAGNAASIPSKCGVSIP 107 Query: 590 NNCS 601 S Sbjct: 108 YTIS 111
>A0AT33:NLTP4_LENCU Nonspecific lipid-transfer protein 4 precursor - Lens culinaris| (Lentil) Length = 110 Score = 30.8 bits (68), Expect = 7.5 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Frame = +2 Query: 440 PSAECCAALGKA----------NLSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGLTMP 589 PS +CC + K +C C K AG + ++ A ALPGKCG+ +P Sbjct: 41 PSPQCCGGVKKLLAAANTTPDRQAACNC-LKSAAG---SITKLNTNNAAALPGKCGVNIP 96 Query: 590 NNCS 601 S Sbjct: 97 YKIS 100
>A0AT29:NLTP2_LENCU Nonspecific lipid-transfer protein 2 precursor - Lens culinaris| (Lentil) Length = 118 Score = 30.8 bits (68), Expect = 7.5 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Frame = +2 Query: 440 PSAECCAALGKA----------NLSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGLTMP 589 PS +CC + K +C C K AG + ++ A ALPGKCG+ +P Sbjct: 49 PSPQCCGGVKKLLAAANTTPDRQAACNC-LKSAAG---SITKLNTNNAAALPGKCGVNIP 104 Query: 590 NNCS 601 S Sbjct: 105 YKIS 108
>Q43534:LIM2_LILLO LIM2 protein precursor - Lilium longiflorum (Trumpet lily)| Length = 90 Score = 30.8 bits (68), Expect = 7.5 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +2 Query: 353 EGVHGVCGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKANLSCIC 493 EG C + E C P N PS +CC+AL N C+C Sbjct: 23 EGRSQNCSAAIGELMTCGPYVLPGN-NGAPSEQCCSALRAVNHGCLC 68
>Q43533:LIM1_LILLO LIM1 protein precursor - Lilium longiflorum (Trumpet lily)| Length = 90 Score = 30.8 bits (68), Expect = 7.5 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +2 Query: 353 EGVHGVCGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKANLSCIC 493 EG C + E C P N PS +CC+AL N C+C Sbjct: 23 EGRSQNCSAAIGELMTCGPYVLPGN-NGAPSEQCCSALRAVNHGCLC 68
>Q38737:FIL1_ANTMA Stamen-specific protein FIL1 precursor - Antirrhinum majus (Garden| snapdragon) Length = 99 Score = 30.8 bits (68), Expect = 7.5 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = +2 Query: 371 CGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKANLSCICRYKGIA 511 C S C P + T PS++CC AL + C+C IA Sbjct: 31 CSASLANLNACAPFVVLGAAT-TPSSDCCTALQSVDHECLCNTLRIA 76
>Q8TLG9:CHEB1_METAC Chemotaxis response regulator protein-glutamate methylesterase of| group 1 operon - Methanosarcina acetivorans Length = 349 Score = 30.8 bits (68), Expect = 7.5 Identities = 22/60 (36%), Positives = 30/60 (50%) Frame = -2 Query: 642 ATDS*MLMGSTSDHEQLLGMVRPHLPGRAMARFASMWYILSHMPAMPL*RQMHDRLAFPS 463 A D +L+GS++ L V P LPG A +++ HMP RQM +RL F S Sbjct: 153 AGDFGILIGSSTGGPSSLEQVIPRLPGDLPAPV----FVVQHMPEGGFCRQMAERLNFLS 208
>Q43495:108_SOLLC Protein 108 precursor - Solanum lycopersicum (Tomato) (Lycopersicon| esculentum) Length = 102 Score = 30.8 bits (68), Expect = 7.5 Identities = 22/77 (28%), Positives = 29/77 (37%) Frame = +2 Query: 371 CGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKANLSCICRYKGIAGIWLRMYHIDAKR 550 C S +C P +PT S ECC A+ N C+C IA Sbjct: 41 CTASLTGLNVCAPFLVPGSPTA--STECCNAVQSINHDCMCNTMRIAA------------ 86 Query: 551 AMALPGKCGLTMPNNCS 601 +P +C L P +CS Sbjct: 87 --QIPAQCNLP-PLSCS 100
>A0AT32:NLTP6_LENCU Nonspecific lipid-transfer protein 6 precursor - Lens culinaris| (Lentil) Length = 118 Score = 30.4 bits (67), Expect = 9.8 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Frame = +2 Query: 440 PSAECCAALGKA----------NLSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGLTMP 589 PS +CC + K +C C K AG + ++ A ALPGKCG+ +P Sbjct: 49 PSPQCCGGVKKLLAAANTTPDRQAACNC-LKSAAG---SITKLNTNNAAALPGKCGVDIP 104 Query: 590 NNCS 601 S Sbjct: 105 YKIS 108
>A0AT31:NLTP5_LENCU Nonspecific lipid-transfer protein 5 precursor - Lens culinaris| (Lentil) Length = 116 Score = 30.4 bits (67), Expect = 9.8 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Frame = +2 Query: 440 PSAECCAALGKA----------NLSCICRYKGIAGIWLRMYHIDAKRAMALPGKCGLTMP 589 PS +CC + K +C C + I ++ A ALPGKCG+ +P Sbjct: 48 PSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSIT----KLNTNNAAALPGKCGVNIP 103 Query: 590 NNCS 601 S Sbjct: 104 YKIS 107
>Q43193:NLTP1_SORBI Nonspecific lipid-transfer protein 1 precursor - Sorghum bicolor| (Sorghum) (Sorghum vulgare) Length = 118 Score = 30.4 bits (67), Expect = 9.8 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%) Frame = +2 Query: 371 CGMSNDEFKLCQPAAAVNNPTENPSAECCAALGKAN----------LSCICRYKGIAGIW 520 CG + LC A PSA CC+ + N +C C GI Sbjct: 29 CGQVSSAIALCLSYARGQGFA--PSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGI- 85 Query: 521 LRMYHIDAKRAMALPGKCGLTMPNNCS 601 ++A A ++P KCG+++P S Sbjct: 86 ---SGLNAGNAASIPSKCGVSVPYTIS 109 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 148,136,943 Number of extensions: 3184972 Number of successful extensions: 6931 Number of sequences better than 10.0: 28 Number of HSP's gapped: 6920 Number of HSP's successfully gapped: 28 Length of query: 292 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 180 Effective length of database: 69,965,399 Effective search space: 12593771820 Effective search space used: 12593771820 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
