ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf45a19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O15554:KCNN4_HUMAN Intermediate conductance calcium-activated po... 32 2.5
2Q61180:SCNNA_MOUSE Amiloride-sensitive sodium channel subunit al... 31 5.7
3Q7N288:FADJ_PHOLL Fatty acid oxidation complex subunit alpha [In... 30 9.7
4Q9UKG1:DP13A_HUMAN DCC-interacting protein 13-alpha - Homo sapie... 30 9.7

>O15554:KCNN4_HUMAN Intermediate conductance calcium-activated potassium channel|
           protein 4 - Homo sapiens (Human)
          Length = 427
 Score = 32.3 bits (72), Expect = 2.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 354 LDKQKDQRGWRRCLGDGQMMLMHFELVTIWFGRLTW-LHLCCLSCITEISEDLL 512
           L+++K   GW   L    + LM      +WFG  +W L+L  + C   IS  LL
Sbjct: 19  LEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLL 72



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>Q61180:SCNNA_MOUSE Amiloride-sensitive sodium channel subunit alpha - Mus musculus|
           (Mouse)
          Length = 699

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = +1

Query: 22  TESPRFAAPHHGTSPAGDDNRPPPANGARSAGSFRMGTEDTKDMLKNADWK 174
           T   R A PH    P      PPP N ARSA S      D    +   DWK
Sbjct: 204 TRDLRGALPH----PLQRLRTPPPPNPARSARSASSSVRDNNPQVDRKDWK 250



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>Q7N288:FADJ_PHOLL Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA|
           hydratase/3-hydroxybutyryl-CoA epimerase - Photorhabdus
           luminescens subsp. laumondii
          Length = 727

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 794 KQNKIDQSWYTILITTCNYLQTKFQIVLTCAVLMMPTNDSYRCVDD 657
           +  K+D S YT+L  T        +I   C +LM+  N++ RC+D+
Sbjct: 613 RDKKVDSSVYTLLNITPESHMLSSEIAQRCVMLML--NEAVRCLDE 656



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>Q9UKG1:DP13A_HUMAN DCC-interacting protein 13-alpha - Homo sapiens (Human)|
          Length = 709

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 22  TESPRFAAPHHGTSPAGDDNRPPPANGARSAGSFRMGTEDT 144
           T SP F   H    PA   +RPP    AR++ S  +G+E T
Sbjct: 399 TPSPSFQQRHESLRPAAGQSRPPT---ARTSSSGSLGSEST 436


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 150,184,228
Number of extensions: 3207565
Number of successful extensions: 8058
Number of sequences better than 10.0: 4
Number of HSP's gapped: 8055
Number of HSP's successfully gapped: 4
Length of query: 290
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 178
Effective length of database: 69,965,399
Effective search space: 12453841022
Effective search space used: 12453841022
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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