ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf47o09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK105392:Os08g0328300 32 0.38
2AK102227:Os08g0328300 32 0.38
3AK068938:Os03g0355600 28 5.4
4Os07g0654400:Os07g0654400 28 5.4
5AK108703:Os04g0577700 28 5.4
6AK110629:Os04g0103800 28 9.3

>AK105392:Os08g0328300 |
          Length = 458
 Score = 32.3 bits (72), Expect = 0.38
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 642 RYKEFAYTRHKLHQSQISTIHKHHEEEHGPTTDENKREKRTTSILAIQAAGPEP 481
           R +E+  T+  L    ++   + H+    PTT   KR+K + SI +     P P
Sbjct: 115 RIREWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIPSASVPVPSP 168



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>AK102227:Os08g0328300 |
          Length = 458

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 642 RYKEFAYTRHKLHQSQISTIHKHHEEEHGPTTDENKREKRTTSILAIQAAGPEP 481
           R +E+  T+  L    ++   + H+    PTT   KR+K + SI +     P P
Sbjct: 115 RIREWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIPSASVPVPSP 168



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>AK068938:Os03g0355600 |
          Length = 893

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 234 VST*SLGMKKLVYLYLLHHAEKVP 305
           + T +L +KKLVYLYL+++A+  P
Sbjct: 57  MQTENLELKKLVYLYLINYAKSQP 80



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>Os07g0654400:Os07g0654400 |
          Length = 1054

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 10  RPPKSAPRSFSPSSTGSGMRAVGADAHLYDDLDAVAIPTLLDSRIDGEKVDAQA-PPRPH 186
           RP  +APRS    ST  G+RA        D   AV +P   D     E     A PP PH
Sbjct: 169 RPRAAAPRSALARSTFRGVRA--------DATPAVQLPGRRDGADASETTSTDALPPSPH 220



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>AK108703:Os04g0577700 |
          Length = 367

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +1

Query: 10  RPPKSAPRSFSPSSTGSGMRAVGADAHLYDDLDAVAIPTLLDSRIDGEKVD---AQAPPR 180
           R  ++ P + + +STG+      + + L+DD DA A         DGE+VD     +   
Sbjct: 57  RRARTHPSASASASTGTLTVPSASSSFLWDDADAEA---------DGEEVDFKRESSATT 107

Query: 181 PHLAGLLRR 207
           P  +GLLR+
Sbjct: 108 PSFSGLLRQ 116



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>AK110629:Os04g0103800 |
          Length = 171

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 16  PKSAPRSFSPSSTGSGMRAVGADAHLYDDLDAVAIPTLLDSRIDGEKVDAQAPPRP 183
           P +AP +  P + GS +  V A   L+DD+ A+  P++        ++  +A P P
Sbjct: 7   PPTAPSAPDPRAAGSLLSHVQAVGSLHDDVRALPHPSVAGHDERRRRLQIRALPAP 62


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 16,458,836
Number of extensions: 330076
Number of successful extensions: 1347
Number of sequences better than 10.0: 8
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 10
Length of query: 260
Length of database: 15,399,855
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,435,796
Effective search space: 1841163156
Effective search space used: 1841163156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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