>P36000:AP1B1_YEAST AP-1 complex subunit beta-1 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 726
 Score = 35.0 bits (79), Expect = 0.33
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 228 KNVST*SLGMKKLVYLYLLHHAEKVPQAC 314
           KN++T  +  KKLVYLY++++AE  P+ C
Sbjct: 69  KNIATIDVEQKKLVYLYVMNYAETHPELC 97

>O43079:AP1B1_SCHPO AP-1 complex subunit beta-1 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 683

 Score = 34.3 bits (77), Expect = 0.56
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 228 KNVST*SLGMKKLVYLYLLHHAEKVPQAC 314
           KN++T  + +KKLVYLYL+++A+  P  C
Sbjct: 60  KNLATRDITLKKLVYLYLINYAKTHPDLC 88

>Q9N0E3:RTN4R_MACFA Reticulon-4 receptor precursor - Macaca fascicularis (Crab eating|
           macaque) (Cynomolgus monkey)
          Length = 473

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 26/76 (34%), Positives = 33/76 (43%)
 Frame = +1

Query: 28  PRSFSPSSTGSGMRAVGADAHLYDDLDAVAIPTLLDSRIDGEKVDAQAPPRPHLAGLLRR 207
           P   SP   GSG R +      +  L   A P L   R +G +     PP    +G  RR
Sbjct: 364 PPGDSPPGNGSGPRHINDSP--FGTLPGSAEPPLTAVRPEGSE-----PPGFPTSGPRRR 416

Query: 208 PPGSQDSRTCRHSRLG 255
           P  S+ +RT  H RLG
Sbjct: 417 PGCSRKNRTRSHCRLG 432

>Q9BZR6:RTN4R_HUMAN Reticulon-4 receptor precursor - Homo sapiens (Human)|
          Length = 473

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 26/76 (34%), Positives = 33/76 (43%)
 Frame = +1

Query: 28  PRSFSPSSTGSGMRAVGADAHLYDDLDAVAIPTLLDSRIDGEKVDAQAPPRPHLAGLLRR 207
           P   SP   GSG R +      +  L   A P L   R +G +     PP    +G  RR
Sbjct: 364 PPGDSPPGNGSGPRHINDSP--FGTLPGSAEPPLTAVRPEGSE-----PPGFPTSGPRRR 416

Query: 208 PPGSQDSRTCRHSRLG 255
           P  S+ +RT  H RLG
Sbjct: 417 PGCSRKNRTRSHCRLG 432

>Q7TNR9:ARHG4_MOUSE Rho guanine nucleotide exchange factor 4 - Mus musculus (Mouse)|
          Length = 484

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 289 WWSR*R*TSFFIPSDYVDTFLNLDCPVGDVEAPRDEGEEA 170
           WW R      + P+ +V   +N D P  D EAPR    EA
Sbjct: 25  WWGRVADGEGWFPASFVRLRVNQDEPADDYEAPRAGAREA 64

>Q9ZFB6:QCRB_STRLI Ubiquinol-cytochrome c reductase cytochrome b subunit -|
           Streptomyces lividans
          Length = 549

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 663 STCTEKVRYKEFAYTRHKLHQSQISTIHKHHE---EEHGPTTDENKREKRTTSILAIQA 496
           S   +++ + EF      + Q Q+ T+  H +    E GPT DEN  E++ +    ++A
Sbjct: 460 SAIIKRLPHGEFIEVHEPISQEQLHTLTAHEQYKPAEIGPTVDENGVERKVSGTQKLRA 518

>Q9X806:QCRB_STRCO Ubiquinol-cytochrome c reductase cytochrome b subunit -|
           Streptomyces coelicolor
          Length = 545

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 651 EKVRYKEFAYTRHKLHQSQISTIHKHHE---EEHGPTTDENKREKRTTSILAIQA 496
           +++ + EF      L Q Q+ T+  H +    E GPT DEN  E++ +    ++A
Sbjct: 460 KRLPHGEFIEVHEPLSQEQLHTLTAHEQYQPAEIGPTVDENGVERKVSGTQKLRA 514


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 98,784,208
Number of extensions: 1834518
Number of successful extensions: 6269
Number of sequences better than 10.0: 7
Number of HSP's gapped: 6265
Number of HSP's successfully gapped: 7
Length of query: 260
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 149
Effective length of database: 70,239,694
Effective search space: 10465714406
Effective search space used: 10465714406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)