ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf44o17 |
|---|---|
| Clone Library Name | barley_pub |
>O75698:HUG1_HUMAN Protein HUG-1 - Homo sapiens (Human)| Length = 362 Score = 36.6 bits (83), Expect = 0.086 Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 9/117 (7%) Frame = +1 Query: 4 GQGSSMAGLQRSSLTFRRSGSSGMVW--GERLMSDEHSQWTSGEPEFRELRHSRSVGSVG 177 G+G AG R + R +G G+ + L++ S W S P R R R G + Sbjct: 164 GKGHRNAGQLRRTGQRRATGPPGVSFLAAVPLITVPQSSWGSRAP--RAARSPRDNGIIS 221 Query: 178 AQRRRNDGTEHGGQAFRTRRVAPAIDPPSPK-------VPGCIFCGIFRKAGPSQPS 327 +R R G R RR+ P+I P +PK G G R AGP +P+ Sbjct: 222 GERGRL------GPGLRRRRLLPSIRPSAPKERLRRPETSGISDAGGARVAGPGRPN 272
>A1L1J6:ZN652_RAT Zinc finger protein 652 - Rattus norvegicus (Rat)| Length = 608 Score = 32.7 bits (73), Expect = 1.2 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +1 Query: 52 RRSGSSGMVWGERLMSDEHSQWTSGEPEFRELRHSRSVGSVGAQRRRNDGTE 207 R SGS V + MS H T +P FRE R V +V R +D TE Sbjct: 53 RESGSPYSVLADSKMSKPHLHETEEQPYFREPRAVSDVHTVKEDRENSDDTE 104
>Q5DU09:ZN652_MOUSE Zinc finger protein 652 - Mus musculus (Mouse)| Length = 608 Score = 32.7 bits (73), Expect = 1.2 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +1 Query: 52 RRSGSSGMVWGERLMSDEHSQWTSGEPEFRELRHSRSVGSVGAQRRRNDGTE 207 R SGS V + MS H T +P FRE R V +V R +D TE Sbjct: 53 RESGSPYSVLADTKMSKPHLHETEEQPYFREPRAVSDVHTVKEDRENSDDTE 104
>Q6Z398:HXK4_ORYSJ Hexokinase-4, chloroplast precursor - Oryza sativa subsp. japonica| (Rice) Length = 509 Score = 32.3 bits (72), Expect = 1.6 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = -3 Query: 311 PAFLKIPQKMQPGTLGDGGSMAGATRRVRNAWPPCSVP---SLRLRCAPTDPTLRECRSS 141 PA + + Q+ + G GGS A A R A P LRLRCA P LR + Sbjct: 12 PAAIAVVQQQRRGRSRGGGSGAAAVRCSAVAPTSAIAPILADLRLRCAAPLPVLRRVADA 71 Query: 140 LNSG 129 + SG Sbjct: 72 MASG 75
>Q9Y2D9:ZN652_HUMAN Zinc finger protein 652 - Homo sapiens (Human)| Length = 606 Score = 32.3 bits (72), Expect = 1.6 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +1 Query: 52 RRSGSSGMVWGERLMSDEHSQWTSGEPEFRELRHSRSVGSVGAQRRRNDGTE 207 R SGS V + MS H T +P FRE R V +V R +D TE Sbjct: 53 RESGSPYSVLVDTKMSKPHLHETEEQPYFRETRAVSDVHAVKEDRENSDDTE 104
>P28481:CO2A1_MOUSE Collagen alpha-1(II) chain precursor - Mus musculus (Mouse)| Length = 1487 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQNS-GSYGTPAA*GPSVRSAGATT 199 PG GP +GG GA+G A GP+G+Q S G G P + GP+ S T Sbjct: 356 PGPVGP---AGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGT 412
>P02458:CO2A1_HUMAN Collagen alpha-1(II) chain precursor - Homo sapiens (Human)| Length = 1487 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQN-SGSYGTPAA*GPSVRSAGATT 199 PG GP +GG GA+G A GP+G+Q G GTP + GP+ S T Sbjct: 356 PGPVGP---AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 412
>Q8QZV0:DEDD2_MOUSE DNA-binding death effector domain-containing protein 2 - Mus| musculus (Mouse) Length = 330 Score = 32.0 bits (71), Expect = 2.1 Identities = 22/66 (33%), Positives = 27/66 (40%) Frame = +1 Query: 4 GQGSSMAGLQRSSLTFRRSGSSGMVWGERLMSDEHSQWTSGEPEFRELRHSRSVGSVGAQ 183 G SS + S RR SS SQW +G P + R SR S GA+ Sbjct: 118 GNPSSSSKRTEDSCRRRRQASSSS-------DSPQSQWDTGSPPTKRQRRSRGRPSSGAR 170 Query: 184 RRRNDG 201 +RR G Sbjct: 171 QRRRAG 176
>Q8WXF8:DEDD2_HUMAN DNA-binding death effector domain-containing protein 2 - Homo| sapiens (Human) Length = 326 Score = 32.0 bits (71), Expect = 2.1 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Frame = +1 Query: 4 GQGSSMAGLQRSSLTFRRSGSSGMVWGERLMSDEHSQWTSGEPEFRELRHSRSVGSVGAQ 183 G SS + S R+S SS + + QW +G P + R SR S GA+ Sbjct: 118 GTSSSSKRTEGSCRRRRQSSSSA--------NSQQGQWETGSPPTKRQRRSRGRPSGGAR 169 Query: 184 RRRNDGTEHGGQAFRTRRVAPAI-----DPPSPKVPGCIFCGI 297 RR RR APA +P P G + C I Sbjct: 170 RR--------------RRGAPAAPQQQSEPARPSSEGKVTCDI 198
>P05539:CO2A1_RAT Collagen alpha-1(II) chain precursor - Rattus norvegicus (Rat)| Length = 1419 Score = 32.0 bits (71), Expect = 2.1 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQNS-GSYGTPAA*GPSVRSAGATT 199 PG GP +GG GA+G A GP+G+Q S G G P + GP+ S T Sbjct: 288 PGPVGP---AGGPGFLGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGT 344
>P02459:CO2A1_BOVIN Collagen alpha-1(II) chain precursor - Bos taurus (Bovine)| Length = 747 Score = 32.0 bits (71), Expect = 2.1 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQN-SGSYGTPAA*GPSVRSAGATT 199 PG GP +GG GA+G A GP+G+Q G GTP + GP AGA Sbjct: 171 PGPVGP---AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP----AGAAG 223 Query: 200 AP 205 P Sbjct: 224 NP 225
>Q06002:BFSP1_BOVIN Filensin - Bos taurus (Bovine)| Length = 756 Score = 32.0 bits (71), Expect = 2.1 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +2 Query: 53 GGQDHQAWSGARGSCRMNIASGPQGSQNSGSYGTPAA*GPSVRSAGA 193 G QD Q GARG C M +A GP+G TP + GP V G+ Sbjct: 647 GKQDDQKEEGARGPCPM-VAPGPEGP------STPRSQGPQVILGGS 686
>Q9UN75:PCDAC_HUMAN Protocadherin alpha 12 precursor - Homo sapiens (Human)| Length = 941 Score = 31.6 bits (70), Expect = 2.7 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = -3 Query: 209 CSVPSLRLRCAPTDPTLRECRSSLNSGS---PEVHWLCSSDMSLSPQTMPDDPDLLNVSE 39 CS P RCAP PTL C S++ S S +CS++ M P L E Sbjct: 723 CSAPPTVSRCAPGKPTL-VCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSLQLSRE 781 Query: 38 DLCSPAME 15 D +P E Sbjct: 782 DCLNPPSE 789
>O42350:CO1A2_RANCA Collagen alpha-2(I) chain precursor - Rana catesbeiana (Bull frog)| Length = 1355 Score = 31.6 bits (70), Expect = 2.8 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQN----SGSYGTPAA*GPSVRSAG 190 PG RGP+ +G GARG + ++GPQG + G G A GP AG Sbjct: 420 PGARGPNGDAGRPGEPGLLGARGLPGFSGSNGPQGKEGPAGPQGIEGRSGAAGP----AG 475 Query: 191 ATTAP 205 A P Sbjct: 476 ARGEP 480
>Q5DRF2:PCDAC_PANTR Protocadherin alpha 12 precursor - Pan troglodytes (Chimpanzee)| Length = 941 Score = 31.2 bits (69), Expect = 3.6 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Frame = -3 Query: 209 CSVPSLRLRCAPTDPTLRECRSSLNSGS---PEVHWLCSSDMSLSPQTMPDDPDLLNVSE 39 CS P RCAP PTL C S++ S S +CS + M P L E Sbjct: 723 CSAPPTVSRCAPGKPTL-VCSSAVGSWSYSQQRRQRVCSGESPPKTDLMAFSPSLQLSRE 781 Query: 38 DLCSPAME 15 D +P E Sbjct: 782 DCLNPPSE 789
>Q8VID6:PDE11_RAT Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A - Rattus| norvegicus (Rat) Length = 935 Score = 31.2 bits (69), Expect = 3.6 Identities = 23/54 (42%), Positives = 28/54 (51%) Frame = +2 Query: 56 GQDHQAWSGARGSCRMNIASGPQGSQNSGSYGTPAA*GPSVRSAGATTAPSMAA 217 G A S ARGS + +GPQGS NS PA+ G SAG +PS A+ Sbjct: 57 GASSLAQSSARGSTGIGGGAGPQGSANS----HPASGGG--ESAGVPLSPSWAS 104
>Q29400:IBP2_SHEEP Insulin-like growth factor-binding protein 2 precursor - Ovis aries| (Sheep) Length = 317 Score = 30.8 bits (68), Expect = 4.7 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = -3 Query: 314 GPAFLKIPQKMQPGTLGDGGSMAGATRRVRNAWPPCSVPSLRLRCAP 174 GPA L +P + LG GG GA V PPC+ SL C P Sbjct: 7 GPALLLLPPLLLLLLLGAGGGDCGARAEVLFRCPPCTPESL-AACKP 52
>P13384:IBP2_BOVIN Insulin-like growth factor-binding protein 2 precursor - Bos taurus| (Bovine) Length = 317 Score = 30.8 bits (68), Expect = 4.7 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = -3 Query: 314 GPAFLKIPQKMQPGTLGDGGSMAGATRRVRNAWPPCSVPSLRLRCAP 174 GPA L +P + LG GG GA V PPC+ SL C P Sbjct: 7 GPALLLLPPLLLLLLLGAGGGDCGARAEVLFRCPPCTPESL-AACKP 52
>Q8BLX7:COGA1_MOUSE Collagen alpha-1(XVI) chain precursor - Mus musculus (Mouse)| Length = 1580 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQ-NSGSYGTPAA*GPSVR 181 PG GP G H G +G C GP GS G+ G P A GP R Sbjct: 1215 PGLMGPPGFKGKTGHPGLPGPKGDCG---KPGPPGSSGRPGAEGEPGAMGPQGR 1265
>O86835:Y5738_STRCO Uncharacterized zinc protease SCO5738 - Streptomyces coelicolor| Length = 459 Score = 30.4 bits (67), Expect = 6.1 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 7 QGSSMAGLQRSSLTFRRSGSSGMVWGERLMSDE 105 QGS++ GL+ + R G S + WGE++ D+ Sbjct: 381 QGSTVLGLEDTGALMNRIGKSELCWGEQMSVDD 413
>Q07092:COGA1_HUMAN Collagen alpha-1(XVI) chain precursor - Homo sapiens (Human)| Length = 1604 Score = 30.4 bits (67), Expect = 6.1 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQ-NSGSYGTPAA*GPSVR 181 PG GP G H G +G C GP GS G+ G P A GP R Sbjct: 1236 PGLMGPPGFKGKTGHPGLPGPKGDCG---KPGPPGSTGRPGAEGEPGAMGPQGR 1286
>Q6CLD6:ALG11_KLULA Alpha-1,2-mannosyltransferase ALG11 - Kluyveromyces lactis (Yeast)| (Candida sphaerica) Length = 570 Score = 28.5 bits (62), Expect(2) = 6.6 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = -3 Query: 305 FLKIPQKMQPGTLGDGGSMAGATRRVRNAWPPCSVPSLRLRCAPTDPTLR 156 F++I T S+ +T+ + +PPCS SL C +DP R Sbjct: 296 FVEIASTNSTWTYNHIKSIWSSTKNIHIIYPPCSTESLIEGCDKSDPVKR 345 Score = 20.4 bits (41), Expect(2) = 6.6 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = -2 Query: 453 IIDYYHLHILDGPELHKLKTL 391 I+ Y H ++ L KLKT+ Sbjct: 247 IVTYTHYPVISTDMLQKLKTM 267
>Q99MT6:SUCR1_MOUSE Succinate receptor 1 - Mus musculus (Mouse)| Length = 317 Score = 30.0 bits (66), Expect = 8.0 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = +1 Query: 583 LCISVAYILYTTLYTNMML 639 LCIS Y+L+T LYT+M+L Sbjct: 90 LCISNRYVLHTNLYTSMLL 108
>P46804:SPD2_NEPCL Spidroin-2 - Nephila clavipes (Golden silk orbweaver)| Length = 627 Score = 30.0 bits (66), Expect = 8.0 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGP----QGSQNSGSYGTPAA*GPSVRSAG 190 PG +GP + GQ + G+ + A+GP G Q G Y P GPS + Sbjct: 361 PGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGY-APGQQGPSGPGSA 419 Query: 191 ATTAPSMAA 217 + A + AA Sbjct: 420 SAAAAAAAA 428 Score = 30.0 bits (66), Expect = 8.0 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGP----QGSQNSGSYGTPAA*GPSVRSAG 190 PG +GP ++ GQ + G+ + A+GP G Q G Y P GPS + Sbjct: 398 PGQQGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGY-APGQQGPSGPGSA 456 Query: 191 ATTAPSMA 214 A A + A Sbjct: 457 AAAAAAAA 464
>P12108:CO9A2_CHICK Collagen alpha-2(IX) chain precursor - Gallus gallus (Chicken)| Length = 677 Score = 30.0 bits (66), Expect = 8.0 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = +2 Query: 23 PGCRGPH*HSGGQDHQAWSGARGSCRMNIASGPQGSQN-SGSYGTPAA*GPSVRSAGATT 199 PG +GP G + H+ GA G GP+G SG G P GP G Sbjct: 178 PGPKGPQGLQGLKGHRGRPGALGEPGQQGKQGPKGDVGVSGEQGVPGPPGPQ----GQRG 233 Query: 200 APSMA 214 P MA Sbjct: 234 YPGMA 238
>Q8CGN4:BCOR_MOUSE BCL-6 corepressor - Mus musculus (Mouse)| Length = 1759 Score = 24.3 bits (51), Expect(2) = 9.9 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 298 KSHRRCSQEPWAMVDLWQGLPAVSGMP 218 K +R S+E D QGLP +SG P Sbjct: 1268 KGNRGWSEESLKSCDNEQGLPVLSGSP 1294 Score = 23.9 bits (50), Expect(2) = 9.9 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -3 Query: 134 SGSPEVHWLCSSDMSLSPQTMPDDPDLLNVSEDLCSPAMELP 9 SGSP + L S++ S QT P C+PA LP Sbjct: 1291 SGSPPMKSLSSTNASGKKQTQPS-----------CTPASRLP 1321 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 132,266,453 Number of extensions: 3267169 Number of successful extensions: 8899 Number of sequences better than 10.0: 26 Number of HSP's gapped: 8881 Number of HSP's successfully gapped: 29 Length of query: 221 Length of database: 100,686,439 Length adjustment: 109 Effective length of query: 112 Effective length of database: 70,788,284 Effective search space: 7928287808 Effective search space used: 7928287808 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
