| Clone Name | FLbaf44o17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001048696.1| Oryza sativa (japonica cultivar-group) Os01g0174100 (Os01g0174100) mRNA, complete cds Length = 704 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 265 cccaaggttcctggctgcatcttctgtgggattttcaggaag 306 ||||||||||| || |||||||||||||| ||||| |||||| Sbjct: 305 cccaaggttcccggatgcatcttctgtggaatttttaggaag 346
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 265 cccaaggttcctggctgcatcttctgtgggattttcaggaag 306 ||||||||||| || |||||||||||||| ||||| |||||| Sbjct: 3817449 cccaaggttcccggatgcatcttctgtggaatttttaggaag 3817408
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 265 cccaaggttcctggctgcatcttctgtgggattttcaggaag 306 ||||||||||| || |||||||||||||| ||||| |||||| Sbjct: 90991 cccaaggttcccggatgcatcttctgtggaatttttaggaag 90950
>dbj|AK120465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108I08, full insert sequence Length = 710 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 265 cccaaggttcctggctgcatcttctgtgggattttcaggaag 306 ||||||||||| || |||||||||||||| ||||| |||||| Sbjct: 311 cccaaggttcccggatgcatcttctgtggaatttttaggaag 352
>ref|XM_394526.2| PREDICTED: Apis mellifera similar to CG32702-PA (LOC411053), mRNA Length = 11304 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 492 atttatctttttctcgatcttt 513 |||||||||||||||||||||| Sbjct: 4524 atttatctttttctcgatcttt 4503
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 gcaccgagcatggcggccagg 220 ||||||||||||||||||||| Sbjct: 2801734 gcaccgagcatggcggccagg 2801714
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 tgtgacagggttatcagggtc 397 ||||||||||||||||||||| Sbjct: 1548584 tgtgacagggttatcagggtc 1548564
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 tgtgacagggttatcagggtc 397 ||||||||||||||||||||| Sbjct: 1565127 tgtgacagggttatcagggtc 1565107
>gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92345 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 tcaggaggtcaggatcatcag 70 ||||||||||||||||||||| Sbjct: 8068 tcaggaggtcaggatcatcag 8088
>gb|AE010095.1| Streptococcus pyogenes strain MGAS8232, section 143 of 173 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 tgtgacagggttatcagggtc 397 ||||||||||||||||||||| Sbjct: 6061 tgtgacagggttatcagggtc 6041
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gccaggcattccggacacgg 234 |||||||||||||||||||| Sbjct: 3924754 gccaggcattccggacacgg 3924735
>gb|CP000158.1| Hyphomonas neptunium ATCC 15444, complete genome Length = 3705021 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tttatctttttctcgatctt 512 |||||||||||||||||||| Sbjct: 306643 tttatctttttctcgatctt 306624
>gb|AC189527.1| Brassica rapa subsp. pekinensis clone KBrB092L06, complete sequence Length = 126922 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 ctatgcatatttatcttttt 503 |||||||||||||||||||| Sbjct: 29773 ctatgcatatttatcttttt 29754
>gb|AC183805.2| Pan troglodytes BAC clone CH251-9E14 from chromosome 10, complete sequence Length = 138735 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ctgcatcttctgtgggattttcag 302 ||||||||||| |||||||||||| Sbjct: 18254 ctgcatcttctctgggattttcag 18277
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 1530671 gtgacagggttatcagggtc 1530652
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 1506783 gtgacagggttatcagggtc 1506764
>gb|AC183592.2| Pan troglodytes BAC clone CH251-733I16 from chromosome 10, complete sequence Length = 167069 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ctgcatcttctgtgggattttcag 302 ||||||||||| |||||||||||| Sbjct: 87633 ctgcatcttctctgggattttcag 87610
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 atgcatatttatctttttct 505 |||||||||||||||||||| Sbjct: 2098933 atgcatatttatctttttct 2098914
>gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome 15, complete sequence Length = 190948 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aagggcagggaagttccatg 21 |||||||||||||||||||| Sbjct: 94343 aagggcagggaagttccatg 94324
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 1512311 gtgacagggttatcagggtc 1512292
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 1543418 gtgacagggttatcagggtc 1543399
>gb|AE006609.1| Streptococcus pyogenes M1 GAS, section 138 of 167 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 6059 gtgacagggttatcagggtc 6040
>gb|AC140187.3| Mus musculus BAC clone RP24-364N20 from chromosome Y, complete sequence Length = 151358 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tagagtgatctgtgtgttca 365 |||||||||||||||||||| Sbjct: 35836 tagagtgatctgtgtgttca 35817
>gb|AC142267.3| Mus musculus BAC clone RP24-131K10 from chromosome Y, complete sequence Length = 151710 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tagagtgatctgtgtgttca 365 |||||||||||||||||||| Sbjct: 97625 tagagtgatctgtgtgttca 97606
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 1539822 gtgacagggttatcagggtc 1539803
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 caccgagcatggcggccagg 220 |||||||||||||||||||| Sbjct: 3058095 caccgagcatggcggccagg 3058114
>gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosome y, complete sequence Length = 166980 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tagagtgatctgtgtgttca 365 |||||||||||||||||||| Sbjct: 124180 tagagtgatctgtgtgttca 124199
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tgtgtgttcatcaaccatat 375 |||||||||||||||||||| Sbjct: 4017027 tgtgtgttcatcaaccatat 4017046
>emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chromosome 10 Contains a novel protein similar to KIAA0592, solute carrier family 9 member 3 (SLC9A3) pseudogene and novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), complete sequence Length = 163231 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ctgcatcttctgtgggattttcag 302 ||||||||||| |||||||||||| Sbjct: 80597 ctgcatcttctctgggattttcag 80620
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ctgcatcttctgtgggattttcag 302 ||||||||||| |||||||||||| Sbjct: 141677 ctgcatcttctctgggattttcag 141654
>emb|AL512366.12| Human DNA sequence from clone RP11-449O16 on chromosome 10 Contains the gene for apobec-1 complementation factor (ACF) (ASP) and the 3' end of a variant of the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), complete sequence Length = 175849 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ctgcatcttctgtgggattttcag 302 ||||||||||| |||||||||||| Sbjct: 4683 ctgcatcttctctgggattttcag 4660
>emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chromosome 10 Contains part of gene FLJ10824, a solute carrier family 9 (sodium/hydrogen exchanger) isoform 5 (SLC9A5) pseudogene, the ASAH2 gene for N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 and a dynein cytoplasmic intermediate polypeptide 2 (DNCI2) pseudogene, complete sequence Length = 162228 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ctgcatcttctgtgggattttcag 302 ||||||||||| |||||||||||| Sbjct: 33888 ctgcatcttctctgggattttcag 33911
>emb|AL356364.18| Human DNA sequence from clone RP11-328I22 on chromosome 1 Contains a novel gene (LOC388739) and a CpG island, complete sequence Length = 102634 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 tgcatatttatctttttctc 506 |||||||||||||||||||| Sbjct: 63895 tgcatatttatctttttctc 63876
>emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 on chromosome 6p24.1-25.3 Contains the 3' end of a putative novel gene, complete sequence Length = 126281 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gggagccagaattcagggag 144 |||||||||||||||||||| Sbjct: 90103 gggagccagaattcagggag 90084
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 accatcgcccaaggttcctg 277 |||||||||||||||||||| Sbjct: 2336323 accatcgcccaaggttcctg 2336304
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 1580081 gtgacagggttatcagggtc 1580062
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gtgacagggttatcagggtc 397 |||||||||||||||||||| Sbjct: 316789 gtgacagggttatcagggtc 316808
>gb|AC069018.17|AC069018 Mus musculus BAC MGS3-563C15 (Genome Systems Mouse BAC Library) complete sequence Length = 157665 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tagagtgatctgtgtgttca 365 |||||||||||||||||||| Sbjct: 143580 tagagtgatctgtgtgttca 143599
>dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthase, complete cds Length = 2558 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gacggcaccgagcatggcgg 215 |||||||||||||||||||| Sbjct: 242 gacggcaccgagcatggcgg 223
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tgtgtgttcatcaaccatat 375 |||||||||||||||||||| Sbjct: 9885 tgtgtgttcatcaaccatat 9904
>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence Length = 103157 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 tgatatgcttgtatagttgcatgc 473 |||||| ||||||||||||||||| Sbjct: 50414 tgatatacttgtatagttgcatgc 50437
>gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence Length = 102183 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 tgatatgcttgtatagttgcatgc 473 |||||| ||||||||||||||||| Sbjct: 3107 tgatatacttgtatagttgcatgc 3130
>ref|XM_953459.1| Neurospora crassa OR74A hypothetical protein (NCU09048.1) partial mRNA Length = 3318 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 ttgttgatgtggccgtattc 540 |||||||||||||||||||| Sbjct: 1964 ttgttgatgtggccgtattc 1945
>emb|AL929407.16| Mouse DNA sequence from clone RP23-99C16 on chromosome 2, complete sequence Length = 144566 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 tgcatatttatctttttctc 506 |||||||||||||||||||| Sbjct: 35535 tgcatatttatctttttctc 35554
>dbj|AP001815.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-97D10, complete sequence Length = 167653 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 ggtgctatgcatatttatcttttt 503 |||||||||||||||| ||||||| Sbjct: 92802 ggtgctatgcatatttttcttttt 92779
>ref|NG_001480.1| Mus musculus ubiquitin-activating enzyme E1, Chr Y-1, pseudogene 2 (Ube1y1-ps2) on chromosome Y gb|U09054.1|MMU09054 Mus musculus BALB/c Ancr Ube1y-p2 pseudogene, partial sequence Length = 1221 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tagagtgatctgtgtgttca 365 |||||||||||||||||||| Sbjct: 739 tagagtgatctgtgtgttca 758
>gb|AC155902.1| Loxodonta africana, clone Loxodonta africana-6767875L18, complete sequence Length = 37635 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 aaccatatgtgtgacagggt 387 |||||||||||||||||||| Sbjct: 10575 aaccatatgtgtgacagggt 10556
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gggagccagaattcagggag 144 |||||||||||||||||||| Sbjct: 1007783 gggagccagaattcagggag 1007802 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 106,141,191 Number of extensions: 5536174 Number of successful extensions: 106982 Number of sequences better than 10.0: 48 Number of HSP's gapped: 106982 Number of HSP's successfully gapped: 48 Length of query: 664 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 642 Effective length of database: 18,508,616,841 Effective search space: 11882532011922 Effective search space used: 11882532011922 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)