Clone Information

BLAST Search Result

Clone Name	FLbaf38g14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LOC_Os02g17390:12002.t01532:unspliced-genomic peroxisomal fa...	36	0.36
2	LOC_Os09g36200:12009.t03096:unspliced-genomic senescence-ind...	35	0.68
3	LOC_Os04g12639:12004.t01087:unspliced-genomic carboxyl-termi...	34	1.3
4	LOC_Os09g13470:12009.t01137:unspliced-genomic expressed protein	26	1.4
5	LOC_Os02g53100:12002.t04889:unspliced-genomic OsWRKY32 - Sup...	26	1.7
6	LOC_Os09g26210:12009.t02300:unspliced-genomic zinc finger pr...	34	1.8
7	LOC_Os03g10240:12003.t00826:unspliced-genomic expressed protein	34	1.8
8	LOC_Os04g15550:12004.t01322:unspliced-genomic expressed protein	25	2.2
9	LOC_Os02g48640:12002.t04448:unspliced-genomic expressed protein	33	2.4
10	LOC_Os12g18260:12012.t01676:unspliced-genomic zinc knuckle f...	33	2.4
11	LOC_Os10g37830:12010.t03041:unspliced-genomic ATPP2-A13, put...	33	2.4
12	LOC_Os02g56470:12002.t05219:unspliced-genomic hypothetical p...	33	2.4
13	LOC_Os01g15590:12001.t01410:unspliced-genomic conserved hypo...	33	2.4
14	LOC_Os01g05230:12001.t00409:unspliced-genomic hypothetical p...	33	2.4
15	LOC_Os01g56690:12001.t05079:unspliced-genomic helix-loop-hel...	27	3.1
16	LOC_Os12g37610:12012.t03441:unspliced-genomic ribosomal prot...	33	3.3
17	LOC_Os03g39910:12003.t03423:unspliced-genomic gene X-like pr...	33	3.3
18	LOC_Os02g43030:12002.t03888:unspliced-genomic conserved mebr...	33	3.3
19	LOC_Os09g15670:12009.t01355:unspliced-genomic protein phosph...	26	3.4
20	LOC_Os05g49840:12005.t04417:unspliced-genomic triacylglycero...	26	4.2
21	LOC_Os06g45250:12006.t04212:unspliced-genomic pseudouridylat...	32	4.5
22	LOC_Os04g02870:12004.t00181:unspliced-genomic arginine/serin...	32	4.5
23	LOC_Os12g13790:12012.t01246:unspliced-genomic POT family pro...	32	4.6
24	LOC_Os09g13890:12009.t01178:unspliced-genomic calmodulin bin...	32	4.6
25	LOC_Os07g43630:12007.t04008:unspliced-genomic retrotransposo...	32	4.6
26	LOC_Os04g31070:12004.t02791:unspliced-genomic acyl-desaturas...	32	4.6
27	LOC_Os05g49830:12005.t04416:unspliced-genomic triacylglycero...	26	4.6
28	LOC_Os01g26130:12001.t02323:unspliced-genomic expressed protein	26	5.9
29	LOC_Os07g40150:12007.t03676:unspliced-genomic expressed protein	32	6.2
30	LOC_Os03g56410:12003.t04899:unspliced-genomic expressed protein	32	6.2
31	LOC_Os01g58730:12001.t05268:unspliced-genomic glucan endo-1,...	32	6.2
32	LOC_Os08g16660:12008.t01538:unspliced-genomic aspartic prote...	32	6.3
33	LOC_Os01g73604:12001.t06640:unspliced-genomic sm protein	32	6.3
34	LOC_Os11g06840:12011.t00576:unspliced-genomic nucleic acid b...	24	7.1
35	LOC_Os01g40680:12001.t03591:unspliced-genomic pentatricopept...	30	7.4
36	LOC_Os12g10580:12012.t00935:unspliced-genomic ribulose bisph...	26	7.6
37	LOC_Os09g36440:12009.t03120:unspliced-genomic transcription ...	25	7.8
38	LOC_Os01g03050:12001.t00197:unspliced-genomic fruit protein ...	26	7.9
39	LOC_Os08g39060:12008.t03640:unspliced-genomic Leucine Rich R...	31	8.6
40	LOC_Os04g11530:12004.t00978:unspliced-genomic methyl-CpG bin...	31	8.6
41	LOC_Os01g08930:12001.t00771:unspliced-genomic ATP-dependent ...	31	8.6
42	LOC_Os10g12460:12010.t01024:unspliced-genomic retrotransposo...	31	8.6
43	LOC_Os04g46520:12004.t04182:unspliced-genomic retrotransposo...	31	8.6
44	LOC_Os03g51580:12003.t04485:unspliced-genomic symbiotic ammo...	31	8.6
45	LOC_Os03g36600:12003.t03129:unspliced-genomic retrotransposo...	31	8.6
46	LOC_Os02g46970:12002.t04283:unspliced-genomic 4-coumarate--C...	31	8.6
47	LOC_Os01g04430:12001.t00331:unspliced-genomic conserved hypo...	31	8.6
48	LOC_Os05g05920:12005.t00482:unspliced-genomic desiccation-re...	29	9.4
49	LOC_Os03g55570:12003.t04819:unspliced-genomic SWIB/MDM2 doma...	25	9.7

>LOC_Os02g17390:12002.t01532:unspliced-genomic peroxisomal fatty acid beta-oxidation multifunctional protein,|
           putative, expressed
          Length = 8765
 Score = 35.9 bits (72), Expect = 0.36
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -3 / -2

                              
Query: 478 MMMGCRALTGGLQMVASAS 422
           ++MGC ALTGGLQMV +A+
Sbjct: 283 LLMGCSALTGGLQMVTTAT 227



 Score = 35.0 bits (70), Expect = 0.68
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3 / +3

                       
Query: 438 ICNPPVNALHPI 473
           ICNPPVNALHPI
Sbjct: 243 ICNPPVNALHPI 278

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>LOC_Os09g36200:12009.t03096:unspliced-genomic senescence-inducible chloroplast stay-green protein 1, putative,|
           expressed
          Length = 2392

 Score = 35.0 bits (70), Expect = 0.68
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2 / -3

                                
Query: 392 LRPLMHHLVPIQMDIPPSEAR 330
           L PL HHLVP+Q+ +PP + R
Sbjct: 764 LLPLRHHLVPLQLVVPPLQLR 702

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>LOC_Os04g12639:12004.t01087:unspliced-genomic carboxyl-terminal proteinase, putative, expressed|
          Length = 8766

 Score = 34.1 bits (68), Expect = 1.3
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3 / +1

                                                                
Query: 787  FFFKLQQEAI*SATSYNAYTNVISMKFTIR*QQEAIFSTSLQSYYIDTNRIN 632
            FFF       *S+TS N +  +    F IR*++   +   L S  I T+R++
Sbjct: 1639 FFFPCSNSIN*SSTSKNDFERISRSTFQIR*KKNVFYGNFLVSSQISTHRLS 1794

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>LOC_Os09g13470:12009.t01137:unspliced-genomic expressed protein|
          Length = 2275

 Score = 26.3 bits (51), Expect(2) = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3 / +2

                                        
Query: 433 ASASSAVCVRWAARSGLSCTT*FRSRWIS 347
           ASAS+A   RW +    +C+T  R+R+ S
Sbjct: 890 ASASAAAGERWTSSPCATCSTCSRTRYPS 976



 Score = 24.9 bits (48), Expect(2) = 1.4
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -1 / +3

                                                  
Query: 294  RDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWISLP 181
            R+G       P   G   HRRR        G  W+  P
Sbjct: 984  REGLRADPLSPSFSGSYSHRRRRVVVFLRRGCRWVRAP 1097

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>LOC_Os02g53100:12002.t04889:unspliced-genomic OsWRKY32 - Superfamily of rice TFs having WRKY and zinc finger|
            domains, expressed
          Length = 6054

 Score = 26.3 bits (51), Expect(2) = 1.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1 / -2

                           
Query: 225  ARTLAPNGSGWISLP 181
            A  +AP GSGW+ +P
Sbjct: 1838 AMAVAPTGSGWLCVP 1794



 Score = 24.4 bits (47), Expect(2) = 1.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1 / -1

                                 
Query: 303  GGLRDGGEVGVADPVEEGQRG 241
            GG+ DGG  G A    EG RG
Sbjct: 1914 GGVGDGGGGGGAGEKHEGGRG 1852

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>LOC_Os09g26210:12009.t02300:unspliced-genomic zinc finger protein 2, putative, expressed|
          Length = 617

 Score = 33.6 bits (67), Expect = 1.8
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2 / -2

                                               
Query: 497 ERLRPSAAMTSLPPCSPMLAFHVSS*ASGQRNRKKH 604
           +RLR S +  S PP  P L   +++ ASG+R R++H
Sbjct: 253 DRLRSSCSSPSSPPPPPPLYRSMAAGASGRRRREEH 146

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>LOC_Os03g10240:12003.t00826:unspliced-genomic expressed protein|
          Length = 3627

 Score = 33.6 bits (67), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1 / +3

                                        
Query: 235 PVASLPFFDRIRHPHLTSISQPTSHERPD 321
           P + LPF  R  HPH+T+ + P +  R D
Sbjct: 246 PPSLLPFVMRTSHPHITTTTSPDNSSRSD 332

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>LOC_Os04g15550:12004.t01322:unspliced-genomic expressed protein|
          Length = 8021

 Score = 25.4 bits (49), Expect(2) = 2.2
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -1 / -2

                      
Query: 306 RGGLRDGGEVG 274
           RGG+R+GG+VG
Sbjct: 484 RGGVREGGDVG 452



 Score = 24.9 bits (48), Expect(2) = 2.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1 / -1

                                          
Query: 288 GGEVGVADPVEEGQRGHRRRPARTLAPNGSG 196
           GG+ G +    E +RG  RR  R L   G G
Sbjct: 398 GGDGGGSGRRRERERGRGRRSGRRLGFEGGG 306

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>LOC_Os02g48640:12002.t04448:unspliced-genomic expressed protein|
          Length = 3506

 Score = 33.1 bits (66), Expect = 2.4
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -2 / -2

                                                
Query: 332  RAPPSGRSCEVG*EMEVRWGWRIRSKKGREATGDAP 225
            RAPPS R C        R GWR R   GR  T   P
Sbjct: 2428 RAPPSPRRCPRRGSPRTRKGWRWRGSGGRPVTPS*P 2321

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>LOC_Os12g18260:12012.t01676:unspliced-genomic zinc knuckle family protein|
          Length = 3805

 Score = 33.1 bits (66), Expect = 2.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1 / +2

                                            
Query: 292  SQPTSHERPDGGARASLGGISIWIGTRWCMRG 387
            S PTS  + +G +R  +   S W G  WC  G
Sbjct: 2906 STPTSRSKSNGESRCKISRASRWRGRSWCESG 3001

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>LOC_Os10g37830:12010.t03041:unspliced-genomic ATPP2-A13, putative, expressed|
          Length = 2439

 Score = 33.1 bits (66), Expect = 2.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1 / +1

                                                 
Query: 306 RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGW 193
           R G +  GE+ V+D +  G+R  RRR A   A   +GW
Sbjct: 445 RVGGQAAGELPVSDELRGGRRRRRRREAAAAAAVAAGW 558

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>LOC_Os02g56470:12002.t05219:unspliced-genomic hypothetical protein|
          Length = 1763

 Score = 33.1 bits (66), Expect = 2.4
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1 / +3

                                                  
Query: 303 GGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWIS 187
           GGLR G     +   EEG R H R P R+   N   W+S
Sbjct: 33  GGLRGGAAGWWSRGEEEGGRPHEREPWRSAGRNIKCWVS 149

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>LOC_Os01g15590:12001.t01410:unspliced-genomic conserved hypothetical protein|
          Length = 468

 Score = 33.1 bits (66), Expect = 2.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -1 / +1

                                                
Query: 306 RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSG 196
           RGG R GG          G RG R    R + P+GSG
Sbjct: 199 RGGPRGGGGWSTGGTTVTGWRGRREEVLRIVGPSGSG 309

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>LOC_Os01g05230:12001.t00409:unspliced-genomic hypothetical protein|
          Length = 469

 Score = 33.1 bits (66), Expect = 2.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1 / -2

                                      
Query: 271 HPHLTSISQPTSHERPDGGARASLGGI 351
           H HLT + Q   H  PDGG     GG+
Sbjct: 339 HEHLTDLPQQRRHRYPDGGEERRDGGV 259

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>LOC_Os01g56690:12001.t05079:unspliced-genomic helix-loop-helix DNA-binding domain containing protein, expressed|
          Length = 1660

 Score = 27.2 bits (53), Expect(2) = 3.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2 / -3

                                      
Query: 470 HHHLGAQLEERLRPSAAMTSLPPCSPM 550
           HHH GA L  R      + + PP  P+
Sbjct: 743 HHHAGAGLRRRPLQQLVLRAEPPLPPL 663



 Score = 26.3 bits (51), Expect(2) = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2 / -3

                                
Query: 185 REIHPDPFGARVRAGRRRWPL 247
           R++HP P GA  R  RR   L
Sbjct: 884 RDVHPHPAGAEPRLDRRHLQL 822

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>LOC_Os12g37610:12012.t03441:unspliced-genomic ribosomal protein S6 containing protein, expressed|
          Length = 2372

 Score = 32.7 bits (65), Expect = 3.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1 / +3

                                                     
Query: 306 RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWISLP 181
           RGG   GGE G      +G+RGHR  P    A  G+  +++P
Sbjct: 171 RGGGGGGGEGGHPQLRAQGRRGHRAVPRGRPAQEGAFLVTVP 296

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>LOC_Os03g39910:12003.t03423:unspliced-genomic gene X-like protein, putative, expressed|
          Length = 3745

 Score = 32.7 bits (65), Expect = 3.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1 / +3

                                                    
Query: 306  RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWIS 187
            RG    G E G A P+ E +RG    P+    P GSG +S
Sbjct: 1659 RGAPVLGAETGAA*PLGETERGVATSPSGPTPPRGSGHVS 1778

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>LOC_Os02g43030:12002.t03888:unspliced-genomic conserved mebrane associated protein, DUF125, putative, expressed|
          Length = 968

 Score = 32.7 bits (65), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1 / -1

                                    
Query: 259 DRIRHPHLTSISQPTSHERPDGGAR 333
           ++++HP      +P SHE PD GAR
Sbjct: 728 EQLKHPVRDRHGEPPSHEHPDAGAR 654

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>LOC_Os09g15670:12009.t01355:unspliced-genomic protein phosphatase 2C, putative, expressed|
          Length = 1435

 Score = 26.3 bits (51), Expect(2) = 3.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3 / +1

                                           
Query: 448 GLQMVASASSAVCVRWAARSGLSCTT*FRSRW 353
           G+     ++      W  R+G  CT+  R RW
Sbjct: 406 GVTSTGCSTGTAARTWRTRAGSGCTSSSRRRW 501



 Score = 23.5 bits (45), Expect(2) = 3.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1 / +2

                        
Query: 258 EEGQRGHRRRPAR 220
           E+G+RG RR P+R
Sbjct: 572 EDGRRGDRRLPSR 610

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>LOC_Os05g49840:12005.t04417:unspliced-genomic triacylglycerol lipase, putative, expressed|
          Length = 4927

 Score = 26.3 bits (51), Expect(2) = 4.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1 / -3

                                    
Query: 273  VADPVEEGQRGHRRRPARTLAPNG 202
            V DPVE+G    RR P  +  P G
Sbjct: 4475 VVDPVEQGHGERRRWPLDSDGPRG 4404



 Score = 23.1 bits (44), Expect(2) = 4.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3 / -2

                                
Query: 448  GLQMVASASSAVCVRWAARS 389
            G     + SSA C  W AR+
Sbjct: 4635 GTSWCGTTSSATCTAWPARA 4576

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>LOC_Os06g45250:12006.t04212:unspliced-genomic pseudouridylate synthase/ tRNA-pseudouridine synthase, putative,|
            expressed
          Length = 3926

 Score = 32.2 bits (64), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3 / +2

                                             
Query: 672  VEKIASCCYLIVNFMLITFVYALYDVADYIASC 770
            V+K  SCC++I+N + +T+++    +  Y   C
Sbjct: 2651 VQKWFSCCFMIINHLGLTYLFIFVGI*HYCFPC 2749

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>LOC_Os04g02870:12004.t00181:unspliced-genomic arginine/serine-rich splicing factor RSP41, putative, expressed|
          Length = 4409

 Score = 32.2 bits (64), Expect = 4.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2 / +1

                                        
Query: 563 HETPTSVSTAAMMSSRLKAEGVLLVEPLD 477
           HET T V+   ++ +RL A G L +EPLD
Sbjct: 52  HETTTQVTLLLLLGARL*ALGFLELEPLD 138

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>LOC_Os12g13790:12012.t01246:unspliced-genomic POT family protein|
          Length = 4092

 Score = 32.2 bits (64), Expect = 4.6
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1 / -3

                                         
Query: 294  RDGGEVGVADPVEEGQRGHRRRPARTLAP 208
            RDG   G A P   G RGH RR  R   P
Sbjct: 3151 RDGDAHGRAQPARLGARGHARRDGRRRVP 3065

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>LOC_Os09g13890:12009.t01178:unspliced-genomic calmodulin binding protein, putative, expressed|
          Length = 4282

 Score = 32.2 bits (64), Expect = 4.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1 / -2

                                             
Query: 294  RDGGEVGVADPVEEGQRGHRRRPARTLAPNGSG 196
            R GG     D   +G+RG+RRR A   AP G+G
Sbjct: 1845 RAGGGSDGGDGALQGRRGNRRRRAWQRAPRGAG 1747

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>LOC_Os07g43630:12007.t04008:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 5949

 Score = 32.2 bits (64), Expect = 4.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1 / +1

                                                  
Query: 306 RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWI 190
           RG    GGE G+A P+ E + G    P+    P GSG +
Sbjct: 526 RGAPALGGETGMARPLGEIEGGAASSPSGPTPPRGSGHV 642

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>LOC_Os04g31070:12004.t02791:unspliced-genomic acyl-desaturase, chloroplast precursor, putative, expressed|
          Length = 4237

 Score = 32.2 bits (64), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1 / -2

                                    
Query: 303 GGLRDGGEVGVADPVEEGQRGHRRR 229
           GG   GG  G+  PV+ G  GH RR
Sbjct: 285 GGREGGGTRGIRSPVDGGGHGHHRR 211

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>LOC_Os05g49830:12005.t04416:unspliced-genomic triacylglycerol lipase, putative, expressed|
          Length = 1310

 Score = 26.3 bits (51), Expect(2) = 4.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1 / +2

                                    
Query: 273  VADPVEEGQRGHRRRPARTLAPNG 202
            V DPVE+G    RR P  +  P G
Sbjct: 1217 VVDPVEQGHGERRRWPLDSDGPRG 1288



 Score = 23.1 bits (44), Expect(2) = 4.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3 / +1

                                
Query: 448  GLQMVASASSAVCVRWAARS 389
            G     + SSA C  W AR+
Sbjct: 1057 GTSWCGTTSSATCTAWPARA 1116

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>LOC_Os01g26130:12001.t02323:unspliced-genomic expressed protein|
          Length = 2633

 Score = 25.8 bits (50), Expect(2) = 5.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1 / +2

                                               
Query: 280 LTSISQPTSHERPDGGARASLGGISIWIGTRWCMRG 387
           L+  S   S   P     +SLGG+  W G   C RG
Sbjct: 71  LSLASASPSSSPPLPSHLSSLGGVVAWCGDCRCRRG 178



 Score = 23.1 bits (44), Expect(2) = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2 / +2

                            
Query: 500 RLRPSAAMTSLPPCSPM 550
           R RPS+  T+  PC P+
Sbjct: 275 RWRPSSIATATVPCYPL 325

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>LOC_Os07g40150:12007.t03676:unspliced-genomic expressed protein|
          Length = 2407

 Score = 31.8 bits (63), Expect = 6.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2 / +2

                                                       
Query: 350  IPPSEARAPPSGRSCEVG*EMEVRWGWRIRSKKGREATGDAPP 222
            IPP++ R+ P G SCE+        G R R      A   APP
Sbjct: 1787 IPPADIRSGPVGESCELPPPAAAPHGERARHPARVAAVDRAPP 1915

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>LOC_Os03g56410:12003.t04899:unspliced-genomic expressed protein|
          Length = 3542

 Score = 31.8 bits (63), Expect = 6.2
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3 / -1

                        
Query: 403 WAARSGLSCTT*F 365
           WAARSGLSCTT F
Sbjct: 185 WAARSGLSCTTGF 147

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>LOC_Os01g58730:12001.t05268:unspliced-genomic glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed|
          Length = 2245

 Score = 31.8 bits (63), Expect = 6.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2 / +2

                                             
Query: 512  SAAMTSLPPCSPMLAFHVSS*ASGQRNRKKHSS 610
            SA+ T  PPCSP  A   S+  S +  R  H+S
Sbjct: 1199 SASSTRTPPCSPRSAARASASCSARSTRTWHAS 1297

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>LOC_Os08g16660:12008.t01538:unspliced-genomic aspartic proteinase nepenthesin-1 precursor, putative, expressed|
          Length = 3566

 Score = 31.8 bits (63), Expect = 6.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1 / +2

                                             
Query: 285  GEVGVADPVEEGQRGHRRRPARTLAPNGSGWIS 187
            GE  +AD    G+R H RR  R       GW++
Sbjct: 3032 GEGAIADAAPRGRRRHDRRRCRDAVHGEEGWVA 3130

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>LOC_Os01g73604:12001.t06640:unspliced-genomic sm protein|
          Length = 6089

 Score = 31.8 bits (63), Expect = 6.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1 / +3

                                        
Query: 285 GEVGVADPVEEGQRGHRRRPARTLAPNGS 199
           G  G A   EE   G RRRPART A  G+
Sbjct: 684 GAAGAAARGEEAGEGERRRPARTPATAGA 770

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>LOC_Os11g06840:12011.t00576:unspliced-genomic nucleic acid binding protein, putative, expressed|
          Length = 2463

 Score = 24.0 bits (46), Expect(3) = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1 / -2

                              
Query: 252 GQRGHRRRPARTLAPNGSG 196
           G+R  RRR     AP+GSG
Sbjct: 764 GRRRRRRRGCAGRAPSGSG 708



 Score = 23.5 bits (45), Expect(3) = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2 / -1

                              
Query: 620  HYSENYASSDFFVLMLTK 567
            H S+NY    +FVL+L K
Sbjct: 1866 HSSKNYIDIMYFVLLLKK 1813



 Score = 23.5 bits (45), Expect(3) = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1 / -1

                               
Query: 306  RGGLRDGGEVGVADPVEEG 250
            RGG  +GG  G A+   EG
Sbjct: 1596 RGGAAEGGAAGEAEGAGEG 1540

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>LOC_Os01g40680:12001.t03591:unspliced-genomic pentatricopeptide repeat protein PPR868-14, putative|
          Length = 1620

 Score = 29.9 bits (59), Expect(2) = 7.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2 / +3

                                  
Query: 347 PPSEARAPPSGRSCEVG*EMEVR 279
           PP   RAPP  RS EVG*  + R
Sbjct: 804 PPRRRRAPPLHRSAEVG*SRQWR 872



 Score = 22.1 bits (42), Expect(2) = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1 / +1

                         
Query: 231  RPARTLAPNGSGW 193
            R  R L P+G GW
Sbjct: 1465 RELRALQPDGGGW 1503

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>LOC_Os12g10580:12012.t00935:unspliced-genomic ribulose bisphosphate carboxylase large chain precursor, putative|
          Length = 3916

 Score = 25.8 bits (50), Expect(2) = 7.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1 / -1

                           
Query: 798  VFFFFFSNYNKKQYN 754
            VFFFFF N+  K+++
Sbjct: 3706 VFFFFFFNHKSKKFS 3662



 Score = 22.6 bits (43), Expect(2) = 7.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3 / -3

                                
Query: 676  STSLQSYYIDTNRINLKGFI 617
            +T +  Y+ID N I ++G+I
Sbjct: 3551 TTGIWIYFIDANWIWIEGYI 3492

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>LOC_Os09g36440:12009.t03120:unspliced-genomic transcription initiation factor IIB, putative, expressed|
          Length = 3054

 Score = 25.4 bits (49), Expect(2) = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2 / -3

                           
Query: 290 MEVRWGWRIRSKKGRE 243
           +E  WGWR R K+ +E
Sbjct: 49  VEAIWGWRRRRKRRKE 2



 Score = 23.1 bits (44), Expect(2) = 7.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2 / -3

                            
Query: 347 PPSEARAPPSGRSCEVG 297
           PP   R PP   SC  G
Sbjct: 175 PPPSGRTPPPCASCSPG 125

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>LOC_Os01g03050:12001.t00197:unspliced-genomic fruit protein PKIWI502, putative, expressed|
          Length = 2679

 Score = 25.8 bits (50), Expect(2) = 7.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1 / -3

                                
Query: 322 GGARASLGGISIWIGTRWCMR 384
           GGA A    +  W G RW  R
Sbjct: 220 GGAAARAAAVERWCGRRWWRR 158



 Score = 22.6 bits (43), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2 / -1

                       
Query: 209 GARVRAGRRRWP 244
           G R R  RRRWP
Sbjct: 300 GRRGRGTRRRWP 265

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>LOC_Os08g39060:12008.t03640:unspliced-genomic Leucine Rich Repeat family protein, expressed|
          Length = 2818

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2 / +2

                                  
Query: 278 WGWRIRSKKGREATGDAPPEP*P 210
           W WR R++  R A   APP P P
Sbjct: 170 WSWRPRARPRRPAAPSAPPPPPP 238

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>LOC_Os04g11530:12004.t00978:unspliced-genomic methyl-CpG binding domain containing protein|
          Length = 5523

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2 / +1

                                           
Query: 458  CSAPHHHLGAQLEERLRPSAAMTSLPPCSPM 550
            C  P   + AQ    + PS ++ S PPCSP+
Sbjct: 3562 CYRPRFAVFAQSTTLVSPSHSLVSTPPCSPL 3654

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>LOC_Os01g08930:12001.t00771:unspliced-genomic ATP-dependent RNA helicase rhlE, putative, expressed|
          Length = 4412

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2 / -3

                                           
Query: 440 LQPAGQCSAPHHHLGAQLEERLRPSAAMTSLP 535
           L PA     P H +   LE  + PSAA+TS P
Sbjct: 507 LVPASTAGTPTHWISVGLEIPISPSAAITSSP 412

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>LOC_Os10g12460:12010.t01024:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2185

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1 / -1

                                                    
Query: 309  VRGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWI 190
            VRG    G E GV   + E +RG    P+    P GSG +
Sbjct: 1447 VRGASALGAETGVVRSLGETKRGAASSPSGPTPPRGSGHV 1328

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>LOC_Os04g46520:12004.t04182:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 1441

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1 / +2

                                          
Query: 285 GEVGVADPVEEGQRGHRRRPARTLAPNGSGW 193
           G  G A     G RG+RR P   L P G+GW
Sbjct: 824 GARGAAALPTPGGRGNRRIPPPHLLPEGAGW 916

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>LOC_Os03g51580:12003.t04485:unspliced-genomic symbiotic ammonium transporter, putative, expressed|
          Length = 2450

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1 / -3

                                               
Query: 330 RTTIRALVRGGLRDGGEVGVADPVEEGQRGHRRRPA 223
           R  +R    G  R GG VGVA   E+G+RG  RR A
Sbjct: 726 RGALRLPRAGERRGGGGVGVAAEGEDGRRGGVRRGA 619

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>LOC_Os03g36600:12003.t03129:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 5816

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1 / +1

                                                   
Query: 306  RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGWI 190
            RG    G E GVA P+ E + G    P+    P GSG +
Sbjct: 5446 RGAPALGAETGVARPLGETEGGVATSPSGPTPPRGSGHV 5562

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>LOC_Os02g46970:12002.t04283:unspliced-genomic 4-coumarate--CoA ligase 2, putative, expressed|
          Length = 3662

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -1 / -1

                                    
Query: 303 GGLRDGGEVGVADPVEEGQRGHRRR 229
           G LRDG  VGV D V E Q   RRR
Sbjct: 854 GHLRDGPLVGVRDQVPERQAAFRRR 780

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>LOC_Os01g04430:12001.t00331:unspliced-genomic conserved hypothetical protein|
          Length = 2216

 Score = 31.3 bits (62), Expect = 8.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1 / -3

                                                 
Query: 306 RGGLRDGGEVGVADPVEEGQRGHRRRPARTLAPNGSGW 193
           RGG    G  G   P      G RRRP+R + P+   W
Sbjct: 807 RGGSSPHGGRGQLHPAAAWADGRRRRPSRRVRPDRGPW 694

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>LOC_Os05g05920:12005.t00482:unspliced-genomic desiccation-related protein PCC13-62 precursor, putative, expressed|
          Length = 1097

 Score = 29.5 bits (58), Expect(2) = 9.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2 / -3

                                                                 
Query: 446 PAGQCSAPHHHLGAQLEERLRPSAAMTSLPPCSPMLAFHVSS*ASGQRNRKKHS 607
           P+  C+AP     A+    L P  A    P CSP  A      +S +R+ +  S
Sbjct: 819 PSSPCTAPPPRRRARTASSLSPRPAPPPPPACSPAAAHRQRIQSSRRRHGRTRS 658



 Score = 21.7 bits (41), Expect(2) = 9.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2 / -3

                         
Query: 197 PDPFGARVRAGRRR 238
           P P  AR RA RRR
Sbjct: 993 PPPACARTRASRRR 952

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>LOC_Os03g55570:12003.t04819:unspliced-genomic SWIB/MDM2 domain containing protein, expressed|
          Length = 7253

 Score = 24.9 bits (48), Expect(2) = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2 / -1

                                    
Query: 380 MHHLVPIQMDIPPSEARAPPSGRSC 306
           +H L P +   PP  A  PP  R C
Sbjct: 467 LHPLPPPRSRAPPPWAPPPPPARPC 393



 Score = 23.1 bits (44), Expect(2) = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1 / -2

                                          
Query: 303 GGLRDGGEVGVADPVEEGQRGHRRRPARTLA 211
           GG+  G    +  P+ + +  H RR AR LA
Sbjct: 283 GGVEVGRPQHLPQPLHQLRVRHHRRAARLLA 191


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 209,068,645
Number of extensions: 2956634
Number of successful extensions: 20590
Number of sequences better than 10.0: 49
Length of query: 266
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 217
Effective length of database: 52,856,264
Effective search space: 11469809288
Effective search space used: 11469809288
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result