ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf38g14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT837727.1| Oryza sativa (indica cultivar-group) cDNA clone:... 84 9e-13
2ref|NM_001053071.1| Oryza sativa (japonica cultivar-group) Os02g... 72 3e-09
3gb|AF220609.1| Oryza sativa multifunctional protein mRNA, comple... 72 3e-09
4gb|AF442962.1|AF442962 Oryza sativa peroxisomal multifunctional ... 72 3e-09
5dbj|AK103620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-09
6dbj|AK103234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-09
7dbj|AK073294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-09
8emb|CT837728.1| Oryza sativa (indica cultivar-group) cDNA clone:... 64 8e-07
9emb|CT830701.1| Oryza sativa (indica cultivar-group) cDNA clone:... 62 3e-06
10ref|NM_001057966.1| Oryza sativa (japonica cultivar-group) Os03g... 62 3e-06
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
12dbj|AK121695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 3e-06
13gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genom... 62 3e-06
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
15dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
16gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 46 0.19
17gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosom... 46 0.19
18gb|AC134525.5| Mus musculus BAC clone RP24-496F7 from 8, complet... 46 0.19
19gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, c... 44 0.76
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.76
21gb|AC126606.16| Mus musculus chromosome 1, clone RP24-68C1, comp... 42 3.0
22gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 3.0
23gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosom... 42 3.0
24gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 42 3.0
25gb|AC159256.2| Mus musculus BAC clone RP24-109N11 from chromosom... 42 3.0
26gb|AC156017.2| Mus musculus BAC clone RP24-239B9 from chromosome... 42 3.0
27emb|X15803.1|MB19KD Mycobacterium bovis gene for a 20kD antigen ... 42 3.0
28emb|X07945.1|MTANT19 Mycobacterium tuberculosis 19kDa antigen gene 42 3.0
29emb|BX883044.1| Rattus norvegicus chromosome 20, major histocomp... 42 3.0
30emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome... 42 3.0
31emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 3.0
32emb|AL627261.10| Zebrafish DNA sequence from clone RP71-1N11 in ... 42 3.0
33gb|AF322632.1|AF322632 Glycine max putative resistance protein (... 42 3.0
34emb|AL928652.10| Mouse DNA sequence from clone RP23-300G1 on chr... 42 3.0
35emb|CT009576.9| Mouse DNA sequence from clone RP23-36H10 on chro... 42 3.0
36gb|J03838.1|MSGANT19K M.tuberculosis 19 Kd antigen complete cds 42 3.0 
>emb|CT837727.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA127O17, full
           insert sequence
          Length = 1323
 Score = 83.8 bits (42), Expect = 9e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||||||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||| 
Sbjct: 346 cgcgctcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccagga 405

                 
Query: 485 gctcaa 490
           ||||||
Sbjct: 406 gctcaa 411
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>ref|NM_001053071.1| Oryza sativa (japonica cultivar-group) Os02g0274100 (Os02g0274100)
           mRNA, complete cds
          Length = 2792

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||| ||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct: 151 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccaggg 210
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>gb|AF220609.1| Oryza sativa multifunctional protein mRNA, complete cds
          Length = 2241

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||| ||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct: 30  cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccaggg 89
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>gb|AF442962.1|AF442962 Oryza sativa peroxisomal multifunctional protein mRNA, complete cds
          Length = 2637

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||| ||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct: 230 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccaggg 289
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>dbj|AK103620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133M03, full
           insert sequence
          Length = 4430

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||| ||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct: 161 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccaggg 220
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>dbj|AK103234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F01, full
           insert sequence
          Length = 3428

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||| ||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct: 154 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccaggg 213
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>dbj|AK073294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025B12, full
           insert sequence
          Length = 2793

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 425 cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatcatcatctaggg 484
           |||| ||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct: 152 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatcatcatccaggg 211
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>emb|CT837728.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067A21, full
           insert sequence
          Length = 885

 Score = 63.9 bits (32), Expect = 8e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 439 tctgcaacccgccggtcaatgctctgcaccccatcatcatctaggggctcaa 490
           |||||||||||||||||||||  ||||| ||||| |||||| ||||||||||
Sbjct: 383 tctgcaacccgccggtcaatgtgctgcatcccattatcatccaggggctcaa 434
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>emb|CT830701.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI001J24, full
           insert sequence
          Length = 812

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 371 ggtggtgcatgagaggccggagcgcgccgcccacc 405
           ||||||||| |||||||||||||||||||||||||
Sbjct: 157 ggtggtgcacgagaggccggagcgcgccgcccacc 191
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>ref|NM_001057966.1| Oryza sativa (japonica cultivar-group) Os03g0775500 (Os03g0775500)
           mRNA, complete cds
          Length = 806

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 371 ggtggtgcatgagaggccggagcgcgccgcccacc 405
           ||||||||| |||||||||||||||||||||||||
Sbjct: 118 ggtggtgcacgagaggccggagcgcgccgcccacc 152
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                   
Query: 371      ggtggtgcatgagaggccggagcgcgccgcccacc 405
                ||||||||| |||||||||||||||||||||||||
Sbjct: 31940635 ggtggtgcacgagaggccggagcgcgccgcccacc 31940669
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>dbj|AK121695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G07, full
           insert sequence
          Length = 807

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 371 ggtggtgcatgagaggccggagcgcgccgcccacc 405
           ||||||||| |||||||||||||||||||||||||
Sbjct: 119 ggtggtgcacgagaggccggagcgcgccgcccacc 153
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>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete
             sequence
          Length = 150663

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                
Query: 371   ggtggtgcatgagaggccggagcgcgccgcccacc 405
             ||||||||| |||||||||||||||||||||||||
Sbjct: 51372 ggtggtgcacgagaggccggagcgcgccgcccacc 51406
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 425      cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatca 474
                |||| ||| |||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 10000791 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatca 10000840
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>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0413A11
          Length = 188440

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 425   cgcgctcgccaccatctgcaacccgccggtcaatgctctgcaccccatca 474
             |||| ||| |||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 75484 cgcggtcgtcaccatctgcaacccgcccgtcaatgcgctgcatcccatca 75533
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 434    caccatctgcaacccgccggtcaatgc 460
              |||||||||||| ||||||||||||||
Sbjct: 492426 caccatctgcaatccgccggtcaatgc 492452
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>gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosome 8, complete sequence
          Length = 220224

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 168   agagaagaactagagggagggag 190
             |||||||||||||||||||||||
Sbjct: 17360 agagaagaactagagggagggag 17338
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>gb|AC134525.5| Mus musculus BAC clone RP24-496F7 from 8, complete sequence
          Length = 215900

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 168    agagaagaactagagggagggag 190
              |||||||||||||||||||||||
Sbjct: 121448 agagaagaactagagggagggag 121426
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>gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, complete sequence
          Length = 204943

 Score = 44.1 bits (22), Expect = 0.76
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 267    ccgccacccccacctcacctcc 288
              ||||||||||||||||||||||
Sbjct: 197459 ccgccacccccacctcacctcc 197480
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.76
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 413     cacggcgctcgacgcgctcgcc 434
               ||||||||||||||||||||||
Sbjct: 2442834 cacggcgctcgacgcgctcgcc 2442813
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>gb|AC126606.16| Mus musculus chromosome 1, clone RP24-68C1, complete sequence
          Length = 192150

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 167   gagagaagaactagagggagggaga 191
             |||||||||| ||||||||||||||
Sbjct: 19083 gagagaagaaatagagggagggaga 19107
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 528     cattgccgccgtgctcaccga 548
               |||||||||||||||||||||
Sbjct: 4201611 cattgccgccgtgctcaccga 4201631
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>gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosome 1, complete sequence
          Length = 192042

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 167   gagagaagaactagagggagggaga 191
             |||||||||| ||||||||||||||
Sbjct: 22249 gagagaagaaatagagggagggaga 22225
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 416     ggcgctcgacgcgctcgccac 436
               |||||||||||||||||||||
Sbjct: 2508125 ggcgctcgacgcgctcgccac 2508105
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>gb|AC159256.2| Mus musculus BAC clone RP24-109N11 from chromosome 13, complete
             sequence
          Length = 179979

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 714   atgctgatcacatttgtatat 734
             |||||||||||||||||||||
Sbjct: 74928 atgctgatcacatttgtatat 74908
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>gb|AC156017.2| Mus musculus BAC clone RP24-239B9 from chromosome 16, complete
            sequence
          Length = 166416

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  gatccgccacccccacctcac 284
            |||||||||||||||||||||
Sbjct: 5487 gatccgccacccccacctcac 5467
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>emb|X15803.1|MB19KD Mycobacterium bovis gene for a 20kD antigen protein
          Length = 841

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 528 cattgccgccgtgctcaccga 548
           |||||||||||||||||||||
Sbjct: 353 cattgccgccgtgctcaccga 373
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>emb|X07945.1|MTANT19 Mycobacterium tuberculosis 19kDa antigen gene
          Length = 1799

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 528 cattgccgccgtgctcaccga 548
           |||||||||||||||||||||
Sbjct: 449 cattgccgccgtgctcaccga 469
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>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 3/11
          Length = 340493

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    gcctctctgcccttcttcgac 261
              |||||||||||||||||||||
Sbjct: 185233 gcctctctgcccttcttcgac 185253
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>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13
          Length = 244800

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 528   cattgccgccgtgctcaccga 548
             |||||||||||||||||||||
Sbjct: 42566 cattgccgccgtgctcaccga 42586
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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             14/14
          Length = 278492

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 528   cattgccgccgtgctcaccga 548
             |||||||||||||||||||||
Sbjct: 78592 cattgccgccgtgctcaccga 78612
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>emb|AL627261.10| Zebrafish DNA sequence from clone RP71-1N11 in linkage group 9 Contains
             three CpG islands, complete sequence
          Length = 147392

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 654   taatatgattgtaaacttgta 674
             |||||||||||||||||||||
Sbjct: 26108 taatatgattgtaaacttgta 26088
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>gb|AF322632.1|AF322632 Glycine max putative resistance protein (L20a) gene, complete cds
          Length = 5116

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 595 gaagaagcatagttctcggag 615
           |||||||||||||||||||||
Sbjct: 996 gaagaagcatagttctcggag 976
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>emb|AL928652.10| Mouse DNA sequence from clone RP23-300G1 on chromosome 4, complete
             sequence
          Length = 37820

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   ccacccccacctcacctccat 290
             |||||||||||||||||||||
Sbjct: 17876 ccacccccacctcacctccat 17856
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>emb|CT009576.9| Mouse DNA sequence from clone RP23-36H10 on chromosome 16, complete
              sequence
          Length = 256007

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    gatccgccacccccacctcac 284
              |||||||||||||||||||||
Sbjct: 105941 gatccgccacccccacctcac 105921
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>gb|J03838.1|MSGANT19K M.tuberculosis 19 Kd antigen complete cds
          Length = 2700

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 528  cattgccgccgtgctcaccga 548
            |||||||||||||||||||||
Sbjct: 1361 cattgccgccgtgctcaccga 1381


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 115,132,421
Number of extensions: 6909244
Number of successful extensions: 150528
Number of sequences better than 10.0: 36
Number of HSP's gapped: 150528
Number of HSP's successfully gapped: 36
Length of query: 798
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 776
Effective length of database: 18,508,616,841
Effective search space: 14362686668616
Effective search space used: 14362686668616
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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