ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf41j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY107731.1| Zea mays PCO069957 mRNA sequence 361 3e-96
2ref|NM_001049960.1| Oryza sativa (japonica cultivar-group) Os01g... 353 7e-94
3dbj|AK099180.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 7e-94
4dbj|AK071353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 7e-94
5gb|DQ244387.1| Zea mays clone 6785 mRNA sequence 339 1e-89
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 305 1e-79
7dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic D... 305 1e-79
8dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic D... 305 1e-79
9gb|DQ244768.1| Zea mays clone 10571 mRNA sequence 52 0.004
10ref|NM_106132.2| Arabidopsis thaliana CPK30; calcium- and calmod... 48 0.055
11ref|NM_106131.2| Arabidopsis thaliana unknown protein (AT1G74730... 48 0.055
12gb|AY088988.1| Arabidopsis thaliana clone 12408 mRNA, complete s... 48 0.055
13gb|AF386985.1|AF386985 Arabidopsis thaliana Unknown protein mRNA... 48 0.055
14gb|BT002152.1| Arabidopsis thaliana Unknown protein (At1g74730) ... 48 0.055
15gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 ... 48 0.055
16emb|CT830409.1| Oryza sativa (indica cultivar-group) cDNA clone:... 46 0.22
17emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 46 0.22
18gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, compl... 46 0.22
19gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete s... 44 0.86
20ref|XM_505854.1| Yarrowia lipolytica CLIB122, YALI0F25091g predi... 44 0.86
21ref|NM_137196.1| Drosophila melanogaster CG12964-RA (CG12964), mRNA 44 0.86
22gb|BT024280.1| Drosophila melanogaster IP14311 full insert cDNA 44 0.86
23gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, r... 44 0.86
24gb|AC132338.4| Mus musculus BAC clone RP24-158J16 from chromosom... 44 0.86
25emb|BX841924.1|CNS09Y5J Arabidopsis thaliana Full-length cDNA Co... 44 0.86
26gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 44 0.86
27gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, r... 44 0.86
28emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 44 0.86
29emb|CR855227.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 3.4
30ref|XM_001228920.1| Chaetomium globosum CBS 148.51 hypothetical ... 42 3.4
31emb|AM167904.1| Bordetella avium 197N complete genome 42 3.4
32emb|AM236086.1| Rhizobium leguminosarum bv. viciae plasmid pRL12... 42 3.4
33ref|XM_001131274.1| PREDICTED: Homo sapiens hypothetical protein... 42 3.4
34ref|XM_001130893.1| PREDICTED: Homo sapiens hypothetical protein... 42 3.4
35gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, com... 42 3.4
36gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 42 3.4
37gb|AC116552.2| Homo sapiens chromosome 16 clone RP11-21B21, comp... 42 3.4
38gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 3.4
39gb|AC121223.5| Rattus norvegicus BAC CH230-70M4 (Children's Hos... 42 3.4
40emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 42 3.4
41gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, com... 42 3.4
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.4
43gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, comp... 42 3.4
44emb|AL023096.1|HS398I9 Human DNA sequence from clone RP3-398I9 o... 42 3.4
45gb|AC151989.4| Mus musculus BAC clone RP23-298C3 from chromosome... 42 3.4
46emb|BX842655.1| Bdellovibrio bacteriovorus complete genome, stra... 42 3.4
47emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4,... 42 3.4
48gb|AC135049.2| Homo sapiens chromosome 16 clone RP11-142N21, com... 42 3.4
49gb|AC110118.8| Rattus norvegicus BAC CH230-310N6 (Children's Ho... 42 3.4
50gb|AC004704.2|AC004704 Homo sapiens chromosome 4 clone B341C20 m... 42 3.4
51gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, com... 42 3.4
52dbj|AP002815.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 3.4

>gb|AY107731.1| Zea mays PCO069957 mRNA sequence
          Length = 925
 Score =  361 bits (182), Expect = 3e-96
 Identities = 399/469 (85%), Gaps = 3/469 (0%)
 Strand = Plus / Plus

                                                                       
Query: 94  agaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtcctgtctgcccca 153
           |||||||||||||||| | ||||| ||| | |||||||||||||||||  | ||||| ||
Sbjct: 90  agaaatggctgcaatacctgcagcgatcccgggctgctgctcttcgtctcgcctgcctca 149

                                                                       
Query: 154 gtcccagcggggcctcccgtcctccgcaaggagaaggcacttcaaggtcacggccatggc 213
           |  |  || || ||||||  ||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 150 g--cttgctgg-cctccctgcctccacaagcagaaggcgcttcaaggtcacggccatggc 206

                                                                       
Query: 214 tcccaagaacaaggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggg 273
            ||||| || |||||||||   ||||||||  | ||||| ||||||||||||||||||||
Sbjct: 207 gcccaaaaagaaggtgaaccgctacgacgagagctggtcgaagcagtggttcggcgcggg 266

                                                                       
Query: 274 gatcttcgcggaggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcg 333
            |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||  |||
Sbjct: 267 catcttcgcggagggcagcgaggaggtgtccgtggacgtgttcaagaagctggagcggcg 326

                                                                       
Query: 334 caaggtgctgagcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgt 393
           |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||| |
Sbjct: 327 caaggtgctgagcaccgtggagaaggccggcctgctgtccaaggccgaggagctgggcct 386

                                                                       
Query: 394 cacgctctcctcgctggagaagctcggactgctctccaaggccgaggacctgggactcct 453
            ||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||
Sbjct: 387 gacgctctcctcgctggagaagctgggcctgctctccaaggccgaggacctgggcctgct 446

                                                                       
Query: 454 cagcctcgtcgagagcgcagccacagtgtccccggccgtgctcgcatcgctgtcgctgcc 513
           |||||||||||||| ||| ||      ||||||| |||| ||||| ||  | ||||||||
Sbjct: 447 cagcctcgtcgagaccgcggcggggacgtccccgtccgtcctcgcctccatctcgctgcc 506

                                                            
Query: 514 gctgctcgtcgcctccatagccacggtcgtcttcgtgccggacgactcc 562
           ||| ||||| ||| || | ||| |||| ||| ||||||| |||||||||
Sbjct: 507 gctcctcgtggccgccgtcgccgcggtggtcgtcgtgcccgacgactcc 555



 Score = 58.0 bits (29), Expect = 6e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 620 gggctgttcgtcggctctgtcgtgctcgatggactgcagga 660
           ||||||||||| |||||||||||||||| ||| ||||||||
Sbjct: 613 gggctgttcgtgggctctgtcgtgctcgctggcctgcagga 653



to top

>ref|NM_001049960.1| Oryza sativa (japonica cultivar-group) Os01g0585300 (Os01g0585300)
           mRNA, complete cds
          Length = 754

 Score =  353 bits (178), Expect = 7e-94
 Identities = 250/274 (91%)
 Strand = Plus / Plus

                                                                       
Query: 193 cttcaaggtcacggccatggctcccaagaacaaggtgaacaagtacgacgatgggtggtc 252
           ||||||||||||||||||||||||| |||| |||||||||| |||||||||   ||||||
Sbjct: 140 cttcaaggtcacggccatggctccccagaagaaggtgaacaggtacgacgagaagtggtc 199

                                                                       
Query: 253 caagcagtggttcggcgcggggatcttcgcggaggggagcgaggaggcgtcggtggacgt 312
            |||||||||||||| |||||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 200 gaagcagtggttcggggcggggatattcgcggaggggagcgaggaggtggaggtggacgt 259

                                                                       
Query: 313 gttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaaggcagggctgctgtc 372
           ||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 260 gttcaagaagctggagaggcggaaggtgctgagcacggtggagaaggccgggctgctgtc 319

                                                                       
Query: 373 caaggcggaggagctcggcgtcacgctctcctcgctggagaagctcggactgctctccaa 432
           || ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||
Sbjct: 320 cagggcggaggagctcggcgtcacgctctcctcgctcgaggagctcggcctcctctccaa 379

                                             
Query: 433 ggccgaggacctgggactcctcagcctcgtcgag 466
           |||||||||||| || ||||||||||||||||||
Sbjct: 380 ggccgaggacctcggcctcctcagcctcgtcgag 413



 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 86  gaggaggcagaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtc 141
           ||||||| ||||||||||||  |   |||||||||||||  |||||||||||||||
Sbjct: 42  gaggaggaagaaatggctgccgtccaagcagcaatctccacctgctgctcttcgtc 97



to top

>dbj|AK099180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103B06, full
           insert sequence
          Length = 686

 Score =  353 bits (178), Expect = 7e-94
 Identities = 250/274 (91%)
 Strand = Plus / Plus

                                                                       
Query: 193 cttcaaggtcacggccatggctcccaagaacaaggtgaacaagtacgacgatgggtggtc 252
           ||||||||||||||||||||||||| |||| |||||||||| |||||||||   ||||||
Sbjct: 125 cttcaaggtcacggccatggctccccagaagaaggtgaacaggtacgacgagaagtggtc 184

                                                                       
Query: 253 caagcagtggttcggcgcggggatcttcgcggaggggagcgaggaggcgtcggtggacgt 312
            |||||||||||||| |||||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 185 gaagcagtggttcggggcggggatattcgcggaggggagcgaggaggtggaggtggacgt 244

                                                                       
Query: 313 gttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaaggcagggctgctgtc 372
           ||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 245 gttcaagaagctggagaggcggaaggtgctgagcacggtggagaaggccgggctgctgtc 304

                                                                       
Query: 373 caaggcggaggagctcggcgtcacgctctcctcgctggagaagctcggactgctctccaa 432
           || ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||
Sbjct: 305 cagggcggaggagctcggcgtcacgctctcctcgctcgaggagctcggcctcctctccaa 364

                                             
Query: 433 ggccgaggacctgggactcctcagcctcgtcgag 466
           |||||||||||| || ||||||||||||||||||
Sbjct: 365 ggccgaggacctcggcctcctcagcctcgtcgag 398



 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 86  gaggaggcagaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtc 141
           ||||||| ||||||||||||  |   |||||||||||||  |||||||||||||||
Sbjct: 27  gaggaggaagaaatggctgccgtccaagcagcaatctccacctgctgctcttcgtc 82



to top

>dbj|AK071353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094M23, full
           insert sequence
          Length = 754

 Score =  353 bits (178), Expect = 7e-94
 Identities = 250/274 (91%)
 Strand = Plus / Plus

                                                                       
Query: 193 cttcaaggtcacggccatggctcccaagaacaaggtgaacaagtacgacgatgggtggtc 252
           ||||||||||||||||||||||||| |||| |||||||||| |||||||||   ||||||
Sbjct: 141 cttcaaggtcacggccatggctccccagaagaaggtgaacaggtacgacgagaagtggtc 200

                                                                       
Query: 253 caagcagtggttcggcgcggggatcttcgcggaggggagcgaggaggcgtcggtggacgt 312
            |||||||||||||| |||||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 201 gaagcagtggttcggggcggggatattcgcggaggggagcgaggaggtggaggtggacgt 260

                                                                       
Query: 313 gttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaaggcagggctgctgtc 372
           ||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 261 gttcaagaagctggagaggcggaaggtgctgagcacggtggagaaggccgggctgctgtc 320

                                                                       
Query: 373 caaggcggaggagctcggcgtcacgctctcctcgctggagaagctcggactgctctccaa 432
           || ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||
Sbjct: 321 cagggcggaggagctcggcgtcacgctctcctcgctcgaggagctcggcctcctctccaa 380

                                             
Query: 433 ggccgaggacctgggactcctcagcctcgtcgag 466
           |||||||||||| || ||||||||||||||||||
Sbjct: 381 ggccgaggacctcggcctcctcagcctcgtcgag 414



 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 86  gaggaggcagaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtc 141
           ||||||| ||||||||||||  |   |||||||||||||  |||||||||||||||
Sbjct: 43  gaggaggaagaaatggctgccgtccaagcagcaatctccacctgctgctcttcgtc 98



to top

>gb|DQ244387.1| Zea mays clone 6785 mRNA sequence
          Length = 890

 Score =  339 bits (171), Expect = 1e-89
 Identities = 325/374 (86%), Gaps = 3/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 94  agaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtcctgtctgcccca 153
           |||||||||||||||| | ||||| ||| | |||||||||||||||||  | ||||| ||
Sbjct: 104 agaaatggctgcaatacctgcagcgatcccgggctgctgctcttcgtctcgcctgcctca 163

                                                                       
Query: 154 gtcccagcggggcctcccgtcctccgcaaggagaaggcacttcaaggtcacggccatggc 213
           |  |  || || ||||||  ||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 164 g--cttgctgg-cctccctgcctccacaagcagaaggcgcttcaaggtcacggccatggc 220

                                                                       
Query: 214 tcccaagaacaaggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggg 273
            ||||| || |||||||||   ||||||||    ||||| ||||||||||||||||||||
Sbjct: 221 gcccaaaaagaaggtgaaccgctacgacgagaactggtcgaagcagtggttcggcgcggg 280

                                                                       
Query: 274 gatcttcgcggaggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcg 333
            |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||  |||
Sbjct: 281 catcttcgcggagggcagcgaggaggtgtccgtggacgtgttcaagaagctggagcggcg 340

                                                                       
Query: 334 caaggtgctgagcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgt 393
           |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||| |
Sbjct: 341 caaggtgctgagcaccgtggagaaggccggcctgctgtccaaggccgaggagctgggcct 400

                                                                       
Query: 394 cacgctctcctcgctggagaagctcggactgctctccaaggccgaggacctgggactcct 453
            ||||||||||||||||||||||| || ||||||||||||||||||||| |||| || ||
Sbjct: 401 gacgctctcctcgctggagaagctgggcctgctctccaaggccgaggacttgggcctgct 460

                         
Query: 454 cagcctcgtcgaga 467
           ||||||||||||||
Sbjct: 461 cagcctcgtcgaga 474



 Score = 58.0 bits (29), Expect = 6e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 620 gggctgttcgtcggctctgtcgtgctcgatggactgcagga 660
           ||||||||||| |||||||||||||||| ||| ||||||||
Sbjct: 627 gggctgttcgtgggctctgtcgtgctcgctggcctgcagga 667



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  305 bits (154), Expect = 1e-79
 Identities = 220/242 (90%)
 Strand = Plus / Minus

                                                                            
Query: 225      aggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggggatcttcgcgg 284
                ||||||||| |||||||||   |||||| |||||||||||||| |||||||| |||||||
Sbjct: 22751239 aggtgaacaggtacgacgagaagtggtcgaagcagtggttcggggcggggatattcgcgg 22751180

                                                                            
Query: 285      aggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgcaaggtgctga 344
                ||||||||||||||| |  |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 22751179 aggggagcgaggaggtggaggtggacgtgttcaagaagctggagaggcggaaggtgctga 22751120

                                                                            
Query: 345      gcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtcacgctctcct 404
                |||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 22751119 gcacggtggagaaggccgggctgctgtccagggcggaggagctcggcgtcacgctctcct 22751060

                                                                            
Query: 405      cgctggagaagctcggactgctctccaaggccgaggacctgggactcctcagcctcgtcg 464
                |||| ||| ||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct: 22751059 cgctcgaggagctcggcctcctctccaaggccgaggacctcggcctcctcagcctcgtcg 22751000

                  
Query: 465      ag 466
                ||
Sbjct: 22750999 ag 22750998



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 193      cttcaaggtcacggccatggctcccaagaacaaggt 228
                ||||||||||||||||||||||||| |||| |||||
Sbjct: 22751370 cttcaaggtcacggccatggctccccagaagaaggt 22751335



 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 86       gaggaggcagaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtc 141
                ||||||| ||||||||||||  |   |||||||||||||  |||||||||||||||
Sbjct: 22751468 gaggaggaagaaatggctgccgtccaagcagcaatctccacctgctgctcttcgtc 22751413



to top

>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0024F06
          Length = 129402

 Score =  305 bits (154), Expect = 1e-79
 Identities = 220/242 (90%)
 Strand = Plus / Minus

                                                                          
Query: 225    aggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggggatcttcgcgg 284
              ||||||||| |||||||||   |||||| |||||||||||||| |||||||| |||||||
Sbjct: 127951 aggtgaacaggtacgacgagaagtggtcgaagcagtggttcggggcggggatattcgcgg 127892

                                                                          
Query: 285    aggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgcaaggtgctga 344
              ||||||||||||||| |  |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 127891 aggggagcgaggaggtggaggtggacgtgttcaagaagctggagaggcggaaggtgctga 127832

                                                                          
Query: 345    gcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtcacgctctcct 404
              |||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 127831 gcacggtggagaaggccgggctgctgtccagggcggaggagctcggcgtcacgctctcct 127772

                                                                          
Query: 405    cgctggagaagctcggactgctctccaaggccgaggacctgggactcctcagcctcgtcg 464
              |||| ||| ||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct: 127771 cgctcgaggagctcggcctcctctccaaggccgaggacctcggcctcctcagcctcgtcg 127712

                
Query: 465    ag 466
              ||
Sbjct: 127711 ag 127710



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 193    cttcaaggtcacggccatggctcccaagaacaaggt 228
              ||||||||||||||||||||||||| |||| |||||
Sbjct: 128082 cttcaaggtcacggccatggctccccagaagaaggt 128047



 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 86     gaggaggcagaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtc 141
              ||||||| ||||||||||||  |   |||||||||||||  |||||||||||||||
Sbjct: 128180 gaggaggaagaaatggctgccgtccaagcagcaatctccacctgctgctcttcgtc 128125



to top

>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0712E02
          Length = 158084

 Score =  305 bits (154), Expect = 1e-79
 Identities = 220/242 (90%)
 Strand = Plus / Minus

                                                                         
Query: 225   aggtgaacaagtacgacgatgggtggtccaagcagtggttcggcgcggggatcttcgcgg 284
             ||||||||| |||||||||   |||||| |||||||||||||| |||||||| |||||||
Sbjct: 68628 aggtgaacaggtacgacgagaagtggtcgaagcagtggttcggggcggggatattcgcgg 68569

                                                                         
Query: 285   aggggagcgaggaggcgtcggtggacgtgttcaagaagctggagaagcgcaaggtgctga 344
             ||||||||||||||| |  |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 68568 aggggagcgaggaggtggaggtggacgtgttcaagaagctggagaggcggaaggtgctga 68509

                                                                         
Query: 345   gcaccgtcgagaaggcagggctgctgtccaaggcggaggagctcggcgtcacgctctcct 404
             |||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 68508 gcacggtggagaaggccgggctgctgtccagggcggaggagctcggcgtcacgctctcct 68449

                                                                         
Query: 405   cgctggagaagctcggactgctctccaaggccgaggacctgggactcctcagcctcgtcg 464
             |||| ||| ||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct: 68448 cgctcgaggagctcggcctcctctccaaggccgaggacctcggcctcctcagcctcgtcg 68389

               
Query: 465   ag 466
             ||
Sbjct: 68388 ag 68387



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 193   cttcaaggtcacggccatggctcccaagaacaaggt 228
             ||||||||||||||||||||||||| |||| |||||
Sbjct: 68759 cttcaaggtcacggccatggctccccagaagaaggt 68724



 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 86    gaggaggcagaaatggctgcaatatcagcagcaatctccggctgctgctcttcgtc 141
             ||||||| ||||||||||||  |   |||||||||||||  |||||||||||||||
Sbjct: 68857 gaggaggaagaaatggctgccgtccaagcagcaatctccacctgctgctcttcgtc 68802



to top

>gb|DQ244768.1| Zea mays clone 10571 mRNA sequence
          Length = 819

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 308 gacgtgttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
           ||||| ||||||||||| |||||||| || ||||| |||| |||||||||
Sbjct: 277 gacgttttcaagaagcttgagaagcgaaaagtgctcagcaacgtcgagaa 326



to top

>ref|NM_106132.2| Arabidopsis thaliana CPK30; calcium- and calmodulin-dependent protein
            kinase/ kinase/ protein kinase (CPK30) mRNA, complete cds
          Length = 2550

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 314  ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
            |||||||||||||||||||| || ||| |||||| ||| |||||
Sbjct: 2518 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 2475



to top

>ref|NM_106131.2| Arabidopsis thaliana unknown protein (AT1G74730) mRNA, complete cds
          Length = 1178

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 314 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
           |||||||||||||||||||| || ||| |||||| ||| |||||
Sbjct: 305 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 348



to top

>gb|AY088988.1| Arabidopsis thaliana clone 12408 mRNA, complete sequence
          Length = 812

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 314 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
           |||||||||||||||||||| || ||| |||||| ||| |||||
Sbjct: 305 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 348



to top

>gb|AF386985.1|AF386985 Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 784

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 314 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
           |||||||||||||||||||| || ||| |||||| ||| |||||
Sbjct: 272 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 315



to top

>gb|BT002152.1| Arabidopsis thaliana Unknown protein (At1g74730) mRNA, complete cds
          Length = 639

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 314 ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
           |||||||||||||||||||| || ||| |||||| ||| |||||
Sbjct: 241 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 284



to top

>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
          Length = 115721

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 314   ttcaagaagctggagaagcgcaaggtgctgagcaccgtcgagaa 357
             |||||||||||||||||||| || ||| |||||| ||| |||||
Sbjct: 95555 ttcaagaagctggagaagcgaaaagtgttgagcaacgttgagaa 95512



to top

>emb|CT830409.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020I20, full
           insert sequence
          Length = 764

 Score = 46.1 bits (23), Expect = 0.22
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 365 ctgctgtccaaggcggaggagct 387
           |||||||||||||||||||||||
Sbjct: 326 ctgctgtccaaggcggaggagct 348



to top

>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 46.1 bits (23), Expect = 0.22
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 511   gccgctgctcgtcgcctccatagccacggtc 541
             ||||||||||||||||| ||| |||||||||
Sbjct: 75068 gccgctgctcgtcgccttcatcgccacggtc 75098



to top

>gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, complete sequence
          Length = 107278

 Score = 46.1 bits (23), Expect = 0.22
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 62    tagaggaagaagggagcagggga 84
             |||||||||||||||||||||||
Sbjct: 68645 tagaggaagaagggagcagggga 68623



to top

>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence
          Length = 21146708

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 307      ggacgtgttcaagaagctggagaagcgcaa 336
                ||||||||||||| |||||||| |||||||
Sbjct: 11374900 ggacgtgttcaaggagctggagcagcgcaa 11374871



to top

>ref|XM_505854.1| Yarrowia lipolytica CLIB122, YALI0F25091g predicted mRNA
          Length = 3024

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 316  caagaagctggagaagcgcaag 337
            ||||||||||||||||||||||
Sbjct: 2673 caagaagctggagaagcgcaag 2694



to top

>ref|NM_137196.1| Drosophila melanogaster CG12964-RA (CG12964), mRNA
          Length = 3408

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 307  ggacgtgttcaagaagctggagaagcgcaa 336
            ||||||||||||| |||||||| |||||||
Sbjct: 2346 ggacgtgttcaaggagctggagcagcgcaa 2375



to top

>gb|BT024280.1| Drosophila melanogaster IP14311 full insert cDNA
          Length = 3936

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 307  ggacgtgttcaagaagctggagaagcgcaa 336
            ||||||||||||| |||||||| |||||||
Sbjct: 2548 ggacgtgttcaaggagctggagcagcgcaa 2577



to top

>gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, region 51F-52A, BAC clone
              BACR03D24, complete sequence
          Length = 158402

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 307    ggacgtgttcaagaagctggagaagcgcaa 336
              ||||||||||||| |||||||| |||||||
Sbjct: 137996 ggacgtgttcaaggagctggagcagcgcaa 137967



to top

>gb|AC132338.4| Mus musculus BAC clone RP24-158J16 from chromosome 5, complete sequence
          Length = 163304

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 69     agaagggagcaggggaagagga 90
              ||||||||||||||||||||||
Sbjct: 131308 agaagggagcaggggaagagga 131287



to top

>emb|BX841924.1|CNS09Y5J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL46ZD08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 757

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 314 ttcaagaagctggagaagcgcaaggtgctgagca 347
           |||||||||||||||||||| || ||| ||||||
Sbjct: 292 ttcaagaagctggagaagcgaaaagtgttgagca 325



to top

>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 69     agaagggagcaggggaagagga 90
              ||||||||||||||||||||||
Sbjct: 200640 agaagggagcaggggaagagga 200661



to top

>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones
           BACR48C01 and DS08592, complete sequence
          Length = 192366

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 307 ggacgtgttcaagaagctggagaagcgcaa 336
           ||||||||||||| |||||||| |||||||
Sbjct: 890 ggacgtgttcaaggagctggagcagcgcaa 861



to top

>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 44.1 bits (22), Expect = 0.86
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 316     caagaagctggagaagcgcaag 337
               ||||||||||||||||||||||
Sbjct: 3243440 caagaagctggagaagcgcaag 3243461



to top

>emb|CR855227.1| Oryza sativa genomic DNA, chromosome 4, BAC clone:
             OSIGBa0159H11-OSIGBa0137A07, complete sequence
          Length = 144811

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 146   ctgccccagtcccagcggggcctcccgtc 174
             ||||||||||||||||||  |||||||||
Sbjct: 41245 ctgccccagtcccagcggatcctcccgtc 41217



to top

>ref|XM_001228920.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_02405)
            mRNA, complete cds
          Length = 3852

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  gtcgctgccgctgctcgtcgc 525
            |||||||||||||||||||||
Sbjct: 1249 gtcgctgccgctgctcgtcgc 1229



to top

>emb|AM167904.1| Bordetella avium 197N complete genome
          Length = 3732255

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 305     gtggacgtgttcaagaagctg 325
               |||||||||||||||||||||
Sbjct: 2485306 gtggacgtgttcaagaagctg 2485286



to top

>emb|AM236086.1| Rhizobium leguminosarum bv. viciae plasmid pRL12 complete genome, strain
              3841
          Length = 870021

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 506    tcgctgccgctgctcgtcgcc 526
              |||||||||||||||||||||
Sbjct: 312529 tcgctgccgctgctcgtcgcc 312509



to top

>ref|XM_001131274.1| PREDICTED: Homo sapiens hypothetical protein LOC731924 (LOC731924),
           mRNA
          Length = 864

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 72  agggagcaggggaagaggagg 92
           |||||||||||||||||||||
Sbjct: 430 agggagcaggggaagaggagg 450



to top

>ref|XM_001130893.1| PREDICTED: Homo sapiens hypothetical protein LOC729643 (LOC729643),
           mRNA
          Length = 798

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 72  agggagcaggggaagaggagg 92
           |||||||||||||||||||||
Sbjct: 364 agggagcaggggaagaggagg 384



to top

>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence
          Length = 248540

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     agggagcaggggaagaggagg 92
              |||||||||||||||||||||
Sbjct: 176070 agggagcaggggaagaggagg 176050



to top

>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    aggaagaagggagcaggggaa 85
             |||||||||||||||||||||
Sbjct: 16417 aggaagaagggagcaggggaa 16437



to top

>gb|AC116552.2| Homo sapiens chromosome 16 clone RP11-21B21, complete sequence
          Length = 176797

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 74     ggagcaggggaagaggaggcagaaa 98
              ||||| |||||||||||||||||||
Sbjct: 155507 ggagctggggaagaggaggcagaaa 155483



to top

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 334     caaggtgctgagcaccgtcga 354
               |||||||||||||||||||||
Sbjct: 3745615 caaggtgctgagcaccgtcga 3745595



to top

>gb|AC121223.5| Rattus norvegicus  BAC CH230-70M4 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 263147

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 64     gaggaagaagggagcaggggaagaggagg 92
              |||||||||||||||| |||| |||||||
Sbjct: 166914 gaggaagaagggagcacgggaggaggagg 166886



to top

>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 376    ggcggaggagctcggcgtcac 396
              |||||||||||||||||||||
Sbjct: 185332 ggcggaggagctcggcgtcac 185352



to top

>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence
          Length = 194973

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 77     gcaggggaagaggaggcagaa 97
              |||||||||||||||||||||
Sbjct: 147885 gcaggggaagaggaggcagaa 147905



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 146      ctgccccagtcccagcggggcctcccgtc 174
                ||||||||||||||||||  |||||||||
Sbjct: 16128094 ctgccccagtcccagcggatcctcccgtc 16128066



to top

>gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, complete sequence
          Length = 148054

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    ggagcaggggaagaggaggcagaaa 98
             ||||| |||||||||||||||||||
Sbjct: 29947 ggagctggggaagaggaggcagaaa 29923



to top

>emb|AL023096.1|HS398I9 Human DNA sequence from clone RP3-398I9 on chromosome 1p34.3-36.13
             Contains the 3' end of the RUNX3 gene for runt-related
             transcription factor 3 and a CpG island, complete sequence
          Length = 95241

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 216   ccaagaacaaggtgaacaagt 236
             |||||||||||||||||||||
Sbjct: 31729 ccaagaacaaggtgaacaagt 31709



to top

>gb|AC151989.4| Mus musculus BAC clone RP23-298C3 from chromosome 7, complete sequence
          Length = 217239

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    ggagcaggggaagaggaggcagaaa 98
             ||||||||||||||||||| |||||
Sbjct: 14033 ggagcaggggaagaggaggaagaaa 14009



to top

>emb|BX842655.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 10/11
          Length = 349965

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 775    tcagattcagatttcagatat 795
              |||||||||||||||||||||
Sbjct: 135827 tcagattcagatttcagatat 135847



to top

>emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067G20,
             complete sequence
          Length = 145825

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 146   ctgccccagtcccagcggggcctcccgtc 174
             ||||||||||||||||||  |||||||||
Sbjct: 88844 ctgccccagtcccagcggatcctcccgtc 88816



to top

>gb|AC135049.2| Homo sapiens chromosome 16 clone RP11-142N21, complete sequence
          Length = 115368

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 74   ggagcaggggaagaggaggcagaaa 98
            ||||| |||||||||||||||||||
Sbjct: 6523 ggagctggggaagaggaggcagaaa 6499



to top

>gb|AC110118.8| Rattus norvegicus  BAC CH230-310N6 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 175663

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 64    gaggaagaagggagcaggggaagaggagg 92
             |||||||||||||||| |||| |||||||
Sbjct: 78088 gaggaagaagggagcacgggaggaggagg 78060



to top

>gb|AC004704.2|AC004704 Homo sapiens chromosome 4 clone B341C20 map 4q25, complete sequence
          Length = 134187

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 806   catttgattttcacccacttc 826
             |||||||||||||||||||||
Sbjct: 17356 catttgattttcacccacttc 17336



to top

>gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, complete sequence
          Length = 166914

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    gcaggggaagaggaggcagaa 97
             |||||||||||||||||||||
Sbjct: 98050 gcaggggaagaggaggcagaa 98070



to top

>dbj|AP002815.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-939C17
          Length = 174484

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    agggagcaggggaagaggagg 92
             |||||||||||||||||||||
Sbjct: 92025 agggagcaggggaagaggagg 92005


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 144,365,763
Number of extensions: 7908644
Number of successful extensions: 177599
Number of sequences better than 10.0: 52
Number of HSP's gapped: 177590
Number of HSP's successfully gapped: 67
Length of query: 899
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 876
Effective length of database: 18,503,978,556
Effective search space: 16209485215056
Effective search space used: 16209485215056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top