>P75713:YLBA_ECOLI Uncharacterized protein ylbA - Escherichia coli|
          Length = 261
 Score =  115 bits (289), Expect = 3e-25
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 7/242 (2%)
 Frame = +2

Query: 323  RSVLKKDH-AVITPESHVFSPLPNWTNTLGAYLISPALGAHFTMYLANMQD--GSKSALP 493
            R+++K  + A++TP+  V + +P + N     L +P LGA F  YL  +    G++    
Sbjct: 18   RAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFG 77

Query: 494  PKDVERLIFVVQGSTALSVESRTTQSLLVDSYAYLPANMKHSVISDKP--TTLVIFERRY 667
             + +E  ++V+ G+     E +T  +L    Y Y P     + ++ +   + + +++RRY
Sbjct: 78   GEGIETFLYVISGNITAKAEGKTF-ALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRY 136

Query: 668  TSIGDYQPDLVVGSTDKQPLLETPG-EVFELRKLLPTSLPYDFNIHIMDFQPGEYLNVKE 844
              +  Y P LV G+  +   +   G +   L   LP  L +D N+HI+ F PG      E
Sbjct: 137  VPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIE 196

Query: 845  VHYNQHGLLLLEGQGIYRLGNSWYPVQAGDTIWMAPFVPQWYAALGKTKS-RYLLYKDVN 1021
             H  +HG  +L GQG+Y L N+W PV+ GD I+M  +  Q    +G+ ++  Y+  KD N
Sbjct: 197  THVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCN 256

Query: 1022 RN 1027
            R+
Sbjct: 257  RD 258

>P28809:MMSR_PSEAE MmsAB operon regulatory protein - Pseudomonas aeruginosa|
          Length = 307

 Score = 34.3 bits (77), Expect = 1.3
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
 Frame = +2

Query: 707 STDKQPLLETPGEVFELRKLLPTSLPYDFNIHIM--DFQP---GEYLNVKE-----VHYN 856
           +TD     + P     LR  +P +L     +H +  D  P   G Y   ++       ++
Sbjct: 8   ATDMSHTSDWPLPADSLRLPIPAALLEKLAVHPLSRDLYPTSLGHYRRARDHRMSRERHD 67

Query: 857 QHGLLLL-EGQGIYRL--GNSW--YPVQAGDTIWMAPFVPQWYAA 976
           +H L+   EGQG+ R+  G +W  Y V +GD +W+ P +   YAA
Sbjct: 68  EHLLIYCSEGQGLLRVREGEAWREYRVGSGDLLWLPPGMAHDYAA 112

>Q9W5D0:Y34F_DROME Uncharacterized protein CG12467 - Drosophila melanogaster (Fruit fly)|
          Length = 1561

 Score = 33.9 bits (76), Expect = 1.6
 Identities = 55/231 (23%), Positives = 86/231 (37%), Gaps = 21/231 (9%)
 Frame = +2

Query: 218  SAEPSNDGSQWPPLYSKVTSPTLAP---------------VHLQDLPGFTRSVLKKDHAV 352
            + E S  GS   P  S  TS +L+P               VH+Q     T S     H  
Sbjct: 485  NTETSTSGSASSPSKSLKTSSSLSPAKRSGSESPKNAKARVHIQSRTSTTPSSRINQHLQ 544

Query: 353  ITPESHVFSPLPNWTNTLGAYLISPALG-AHFTMYLANMQDGSKSALPPKDVERLIFVVQ 529
             +   H      N  + LGAY ++P+ G      Y AN       AL P  +   +  ++
Sbjct: 545  PSQHQHHTLSNQNHGHQLGAYTVTPSSGQLSLPRYHAN-------ALQPGSLPSPLQHMR 597

Query: 530  GSTALSVESRTTQSLLVDSYAYLPANMKHSVISDKPTTLVIFERRYTSIGDYQPDLVVGS 709
            G+    +   + +S L D YA  P  +  S   D     ++  + Y       P   + S
Sbjct: 598  GTV---ISDLSFESGLSDDYALPPDAVSESTCMDASMPSLLMRQSYVD----SPSKKIES 650

Query: 710  TDKQ-PLLETPGEVFELRK----LLPTSLPYDFNIHIMDFQPGEYLNVKEV 847
             +K   L +  G++   RK    L   SL Y  + H +  +P   + + EV
Sbjct: 651  LEKMGHLAKLGGKLKTWRKRWFVLKNGSLNYWKSQHDVQRKPQGQIQLDEV 701

>Q59013:Y1618_METJA Uncharacterized protein MJ1618 - Methanococcus jannaschii|
          Length = 125

 Score = 33.5 bits (75), Expect = 2.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 848  HYNQHGLL-LLEGQGIYRLGNSWYPVQAGDTIWMAPFVPQWYAALGKTKSRYL 1003
            HY    +  +LEG+G+  L N  + V+ GDTI++ P  P     +G    + L
Sbjct: 57   HYTSEEIYYILEGRGLMTLDNEKFEVKKGDTIYIPPKTPHKIENIGNVPLKIL 109

>Q53867:Y3923_STRCO Uncharacterized protein SCO3923 - Streptomyces coelicolor|
          Length = 105

 Score = 32.3 bits (72), Expect = 4.8
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 473 GSKSALPPKDVERLIFVVQGSTALSVESRTTQSLLVDSYAYLPANMKHSV--ISDKPTTL 646
           G+  +  P   + + FVV G  A++V   TTQ +   S  Y+PA + H    IS+    L
Sbjct: 39  GTTDSQKPHAQDEVYFVVSGRAAITVGMETTQ-VARGSVVYVPAGVAHKFHHISEDLRVL 97

Query: 647 VIF 655
           V+F
Sbjct: 98  VVF 100

>O40976:V1A_CMVNT Protein 1A [Includes: ATP-dependent helicase - Cucumber mosaic|
           virus (strain NT9) (CMV)
          Length = 993

 Score = 32.3 bits (72), Expect = 4.8
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 797 IHIMDFQPGEYLNVKEVHYNQHGLLLLEGQGIYRLGNSWYPVQAGDTIWMAPFVPQWYAA 976
           I+ M  Q GE +++ + HY    +LL       +LG  +        +W A ++ +W+AA
Sbjct: 403 INGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMY-------DMWNASYISKWFAA 455

Query: 977 L 979
           L
Sbjct: 456 L 456

>P58753:TIRAP_HUMAN Toll-interleukin 1 receptor domain-containing adapter protein -|
           Homo sapiens (Human)
          Length = 221

 Score = 32.3 bits (72), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 218 SAEPSNDGSQWPPLYSKVTSPTLAPVHLQD 307
           +++P++  S  PP  S VTSP+L P H  D
Sbjct: 47  ASQPTSQDSPLPPSLSSVTSPSLPPTHASD 76

>P54189:PEBP_PLAFA Putative phosphatidylethanolamine-binding protein - Plasmodium|
            falciparum
          Length = 190

 Score = 32.3 bits (72), Expect = 4.8
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +3

Query: 885  KEYIDWEIAGIRCKPAIPFGWRHLCLNGMLPLVKPSLGTCCTKMSTGIH 1031
            KEYI W ++GI+ K  I  G +  C+  +LP V PS+     K  TG+H
Sbjct: 88   KEYIHWVVSGIKTKELIK-GTQKNCVT-ILPYVGPSI-----KKGTGLH 129

>Q55002:OTRA_STRRM Oxytetracycline resistance protein - Streptomyces rimosus|
          Length = 663

 Score = 31.6 bits (70), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 701 VGSTDKQPLLETPGEVFELRKLLPTSLPYDFNIHIMDFQPGE 826
           +G+T   P  E  G+VF L   +PTSL +DFN  +     GE
Sbjct: 582 LGATPGVPTAE--GDVFRLEGTMPTSLVHDFNQRVPGLTQGE 621

>Q8ZD71:ERA_YERPE GTP-binding protein era homolog - Yersinia pestis|
          Length = 303

 Score = 31.6 bits (70), Expect = 8.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 752 ELRKLLPTSLPYDFNIHIMDFQPGEYLNVKEVHYNQHGLLLLEGQG 889
           +L + L   LPY   + I  F P E        YN HGL+L+E +G
Sbjct: 202 KLMRFLGEELPYSVTVEIEQFVPNE-----RGGYNIHGLILVEREG 242


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 248,638,388
Number of extensions: 5745934
Number of successful extensions: 15228
Number of sequences better than 10.0: 10
Number of HSP's gapped: 15226
Number of HSP's successfully gapped: 10
Length of query: 458
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 341
Effective length of database: 68,593,924
Effective search space: 23390528084
Effective search space used: 23390528084
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)