| Clone Name | FLbaf47m13 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os11g12340:12011.t01121:unspliced-genomic disease resistance protein RPM1, putative, expressed| Length = 8294 Score = 37.3 bits (75), Expect = 0.39 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 / +1 Query: 1356 SKLNCWCHILRVRFETHILLYQVSILYHHTNDRPPI 1249 SKL CWCH+ + + H+ + ++ ++YH ++RP I Sbjct: 2266 SKLVCWCHLDQ*T*KLHV*ICELGLMYHP*SNRPLI 2373
>LOC_Os09g15940:12009.t01382:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 2149 Score = 36.3 bits (73), Expect = 0.74 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 / -1 Query: 1356 SKLNCWCHILRVRFETHILLYQVSILYHHT 1267 + L CW HI+R+ + ++L Q +I YHHT Sbjct: 463 NSLECWVHIVRILPKQNMLKSQ*NIQYHHT 374
>LOC_Os06g28880:12006.t02592:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 10108 Score = 29.5 bits (58), Expect(2) = 1.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 / +2 Query: 1230 CTCHETISRYFKATDLVGRTPCK 1162 CTCH TI + T L+G C+ Sbjct: 7133 CTCHPTIKERGRPTPLIGPCGCR 7201 Score = 22.6 bits (43), Expect(2) = 1.8 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = -2 / +2 Query: 1371 PQRPHSKLNCWCH 1333 P +P S NC CH Sbjct: 7106 PSQPLSPSNCTCH 7144
>LOC_Os07g41640:12007.t03819:unspliced-genomic DNA binding protein, putative, expressed| Length = 4446 Score = 34.5 bits (69), Expect = 2.6 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +1 / +2 Query: 1021 CKTHVTPDLDVHVSYRVDHIRQVIAPENIEKLVLRLPLFYMSMTLYPFTWSTTNKISGFE 1200 C+ +TP V VD I V+ PE+ EK V LP M + F + NK F+ Sbjct: 2279 CEVFITPYSQVISVECVDDIATVLTPEHYEKCVNTLPNSSMVGIRFCFRQYSKNKFKRFD 2458 Query: 1201 V 1203 + Sbjct: 2459 L 2461
>LOC_Os07g34070:12007.t03084:unspliced-genomic nodulin-like protein, putative, expressed| Length = 2206 Score = 34.5 bits (69), Expect = 2.6 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -2 / -3 Query: 1254 PIIIISVMCTCHETISRYFKATDLVGRTPCKWI*CHRHV 1138 P+I ++CTC +S F A G PC+ H HV Sbjct: 1961 PVITTPILCTCSFALSDRFHAAATRGAPPCRSNFGHHHV 1845
>LOC_Os12g12664:12012.t01134:unspliced-genomic expressed protein| Length = 5192 Score = 27.2 bits (53), Expect(2) = 3.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 / -3 Query: 761 IS*TVPPANTASSIFFPASSTAFCASAIAFGNCFFFSR 648 I+ T+ PA + I P +S + ++ I+ G CF FSR Sbjct: 2625 IAPTLMPAQSLLIIRVPNASLSKSSATISRGLCFCFSR 2512 Score = 24.0 bits (46), Expect(2) = 3.4 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -3 / -1 Query: 860 MVLRSSAFNLCNSQNNVPAP 801 M +++ + NLC+ NN+P P Sbjct: 2771 MEMKN*SQNLCSCANNLPKP 2712
>LOC_Os01g08510:12001.t00729:unspliced-genomic MAR binding filament-like protein 1, putative, expressed| Length = 4750 Score = 33.6 bits (67), Expect = 5.0 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = -3 / -3 Query: 731 ASSIFFPASSTAFCASAIAFGNCFFFSRIFRICEQ*SNV*SDAD 600 ASS+F AS FC SA AF N FF + E S+ D+D Sbjct: 4193 ASSVFS*ASVVIFCCSARAFDNIFFSASRVSFLELVSSSSFDSD 4062
>LOC_Os04g35580:12004.t03228:unspliced-genomic expressed protein| Length = 1133 Score = 33.6 bits (67), Expect = 5.0 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +1 / +1 Query: 673 KAIAEAQKAVDEAGKKIEEAVLAGGTVQEIKHQDENVQGMDIDGAG 810 +A ++A + +E GKK EEA A E+ D + G D G G Sbjct: 346 EATSDAGRREEEEGKKEEEATAAAAATGELSRGDGDEDGGDHGGGG 483
>LOC_Os06g07996:12006.t00682:unspliced-genomic ribosomal protein S15 containing protein| Length = 2720 Score = 33.1 bits (66), Expect = 6.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 / +2 Query: 663 TITKSNCRGTKGCG*SWKKN*RSSIGWRNGSGDKTS 770 T T S+ R + CG W + RS WR+ +GD S Sbjct: 623 TATMSSARSSVNCGHRWVRMGRSGSPWRS*AGDSRS 730
>LOC_Os06g07896:12006.t00672:unspliced-genomic ribosomal protein S15 containing protein| Length = 2720 Score = 33.1 bits (66), Expect = 6.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 / +2 Query: 663 TITKSNCRGTKGCG*SWKKN*RSSIGWRNGSGDKTS 770 T T S+ R + CG W + RS WR+ +GD S Sbjct: 623 TATMSSARSSVNCGHRWVRMGRSGSPWRS*AGDSRS 730
>LOC_Os01g50690:12001.t04503:unspliced-genomic expressed protein| Length = 9427 Score = 33.1 bits (66), Expect = 6.8 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +3 / +3 Query: 612 SNIGSLFTNSEYAGKEKTITKSNCRGTKGCG 704 SN LF S KEK I ++ CR +KGCG Sbjct: 3375 SNGCGLFIGSNL*FKEKNIEEAQCRCSKGCG 3467
>LOC_Os12g22090:12012.t01948:unspliced-genomic expressed protein| Length = 7387 Score = 33.1 bits (66), Expect = 6.9 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 / +1 Query: 877 PHPVDDLITVCMYVRVPIGHL 939 PH V L TVC Y+ +P+GH+ Sbjct: 5008 PHMVTRLCTVCFYLLLPLGHV 5070
>LOC_Os11g36390:12011.t03186:unspliced-genomic replication factor C subunit 1, putative, expressed| Length = 9860 Score = 33.1 bits (66), Expect = 6.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 / +1 Query: 1814 HVHPLIHLNRIKLKLKCLYVS 1876 H HPLI R++ K CLY+S Sbjct: 9613 HEHPLIFWGRMRFKFSCLYIS 9675
>LOC_Os08g20000:12008.t01818:unspliced-genomic NB-ARC domain containing protein, expressed| Length = 7218 Score = 33.1 bits (66), Expect = 6.9 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1 / +1 Query: 1804 HNYNYNINCNIDQGYTCMELRWNK*GKIETNSL 1706 H Y N N + Q +TC++ +WNK + E L Sbjct: 1300 HMYEVNHNQSSSQQHTCLQSKWNKAKRFELTGL 1398
>LOC_Os05g50710:12005.t04501:unspliced-genomic late embryogenesis abundant protein Lea14-A, putative, expressed| Length = 1333 Score = 33.1 bits (66), Expect = 6.9 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = -1 / +3 Query: 1396 WTFNMAGTTPTTTFQVELLVSYSSSAI*NPYTPVPGFHIISPHQRSSSNY 1247 W AGT +TT S S S+ +P P SPH R+ SNY Sbjct: 903 W*RTWAGTGTSTTSSTSASPSTSPSSATSPSRSPPAAR*SSPHSRTCSNY 1052
>LOC_Os03g36560:12003.t03125:unspliced-genomic peroxidase 27 precursor, putative, expressed| Length = 5586 Score = 32.7 bits (65), Expect = 9.4 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -2 / -1 Query: 1341 WCHILRVRFETHILLYQVSILYHHTNDRPPII 1246 WC+ R++ +TH +++ L+ T PP I Sbjct: 4575 WCY*PRIKIKTHYIIHSTDPLFPSTQQTPPSI 4480
>LOC_Os01g62070:12001.t05583:unspliced-genomic metal tolerance protein C3, putative, expressed| Length = 5220 Score = 32.7 bits (65), Expect = 9.4 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = +2 / +1 Query: 1058 SHIELIIYVKSLHLRILRSWFFAYLYSTCL*H 1153 SH LI + L LRI+RS + Y+Y+T L*+ Sbjct: 4522 SHFTLIYGLLLLRLRIMRSVYSVYIYATLL*N 4617
>LOC_Os04g51090:12004.t04587:unspliced-genomic expressed protein| Length = 14055 Score = 26.7 bits (52), Expect(2) = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 / +1 Query: 786 LYIFILMFYLLNRSSSQYCFFNFFSSFIH 700 L + I+ +LL+ CFF+F SSF H Sbjct: 9673 LVMLIVWPFLLDN*YVDLCFFSFSSSFQH 9759 Score = 22.6 bits (43), Expect(2) = 9.9 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -1 / +3 Query: 817 IMFQHHQYPSLVH 779 IMF H +Y +LVH Sbjct: 9606 IMFGHVEYSTLVH 9644 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 776,483,297 Number of extensions: 12021603 Number of successful extensions: 42771 Number of sequences better than 10.0: 18 Length of query: 669 Length of database: 55,613,886 Length adjustment: 52 Effective length of query: 617 Effective length of database: 52,687,430 Effective search space: 32508144310 Effective search space used: 32508144310 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)