ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf47m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os11g12340:12011.t01121:unspliced-genomic disease resist... 37 0.39
2LOC_Os09g15940:12009.t01382:unspliced-genomic retrotransposo... 36 0.74
3LOC_Os06g28880:12006.t02592:unspliced-genomic retrotransposo... 29 1.8
4LOC_Os07g41640:12007.t03819:unspliced-genomic DNA binding pr... 35 2.6
5LOC_Os07g34070:12007.t03084:unspliced-genomic nodulin-like p... 35 2.6
6LOC_Os12g12664:12012.t01134:unspliced-genomic expressed protein 27 3.4
7LOC_Os01g08510:12001.t00729:unspliced-genomic MAR binding fi... 34 5.0
8LOC_Os04g35580:12004.t03228:unspliced-genomic expressed protein 34 5.0
9LOC_Os06g07996:12006.t00682:unspliced-genomic ribosomal prot... 33 6.8
10LOC_Os06g07896:12006.t00672:unspliced-genomic ribosomal prot... 33 6.8
11LOC_Os01g50690:12001.t04503:unspliced-genomic expressed protein 33 6.8
12LOC_Os12g22090:12012.t01948:unspliced-genomic expressed protein 33 6.9
13LOC_Os11g36390:12011.t03186:unspliced-genomic replication fa... 33 6.9
14LOC_Os08g20000:12008.t01818:unspliced-genomic NB-ARC domain ... 33 6.9
15LOC_Os05g50710:12005.t04501:unspliced-genomic late embryogen... 33 6.9
16LOC_Os03g36560:12003.t03125:unspliced-genomic peroxidase 27 ... 33 9.4
17LOC_Os01g62070:12001.t05583:unspliced-genomic metal toleranc... 33 9.4
18LOC_Os04g51090:12004.t04587:unspliced-genomic expressed protein 27 9.9

>LOC_Os11g12340:12011.t01121:unspliced-genomic disease resistance protein RPM1, putative, expressed|
          Length = 8294
 Score = 37.3 bits (75), Expect = 0.39
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2 / +1

                                                
Query: 1356 SKLNCWCHILRVRFETHILLYQVSILYHHTNDRPPI 1249
            SKL CWCH+ +   + H+ + ++ ++YH  ++RP I
Sbjct: 2266 SKLVCWCHLDQ*T*KLHV*ICELGLMYHP*SNRPLI 2373



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>LOC_Os09g15940:12009.t01382:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass|
          Length = 2149

 Score = 36.3 bits (73), Expect = 0.74
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2 / -1

                                          
Query: 1356 SKLNCWCHILRVRFETHILLYQVSILYHHT 1267
            + L CW HI+R+  + ++L  Q +I YHHT
Sbjct: 463  NSLECWVHIVRILPKQNMLKSQ*NIQYHHT 374



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>LOC_Os06g28880:12006.t02592:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 10108

 Score = 29.5 bits (58), Expect(2) = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2 / +2

                                   
Query: 1230 CTCHETISRYFKATDLVGRTPCK 1162
            CTCH TI    + T L+G   C+
Sbjct: 7133 CTCHPTIKERGRPTPLIGPCGCR 7201



 Score = 22.6 bits (43), Expect(2) = 1.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2 / +2

                         
Query: 1371 PQRPHSKLNCWCH 1333
            P +P S  NC CH
Sbjct: 7106 PSQPLSPSNCTCH 7144



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>LOC_Os07g41640:12007.t03819:unspliced-genomic DNA binding protein, putative, expressed|
          Length = 4446

 Score = 34.5 bits (69), Expect = 2.6
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1 / +2

                                                                        
Query: 1021 CKTHVTPDLDVHVSYRVDHIRQVIAPENIEKLVLRLPLFYMSMTLYPFTWSTTNKISGFE 1200
            C+  +TP   V     VD I  V+ PE+ EK V  LP   M    + F   + NK   F+
Sbjct: 2279 CEVFITPYSQVISVECVDDIATVLTPEHYEKCVNTLPNSSMVGIRFCFRQYSKNKFKRFD 2458

             
Query: 1201 V 1203
            +
Sbjct: 2459 L 2461



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>LOC_Os07g34070:12007.t03084:unspliced-genomic nodulin-like protein, putative, expressed|
          Length = 2206

 Score = 34.5 bits (69), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2 / -3

                                                   
Query: 1254 PIIIISVMCTCHETISRYFKATDLVGRTPCKWI*CHRHV 1138
            P+I   ++CTC   +S  F A    G  PC+    H HV
Sbjct: 1961 PVITTPILCTCSFALSDRFHAAATRGAPPCRSNFGHHHV 1845



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>LOC_Os12g12664:12012.t01134:unspliced-genomic expressed protein|
          Length = 5192

 Score = 27.2 bits (53), Expect(2) = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3 / -3

                                                  
Query: 761  IS*TVPPANTASSIFFPASSTAFCASAIAFGNCFFFSR 648
            I+ T+ PA +   I  P +S +  ++ I+ G CF FSR
Sbjct: 2625 IAPTLMPAQSLLIIRVPNASLSKSSATISRGLCFCFSR 2512



 Score = 24.0 bits (46), Expect(2) = 3.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3 / -1

                                
Query: 860  MVLRSSAFNLCNSQNNVPAP 801
            M +++ + NLC+  NN+P P
Sbjct: 2771 MEMKN*SQNLCSCANNLPKP 2712



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>LOC_Os01g08510:12001.t00729:unspliced-genomic MAR binding filament-like protein 1, putative, expressed|
          Length = 4750

 Score = 33.6 bits (67), Expect = 5.0
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -3 / -3

                                                        
Query: 731  ASSIFFPASSTAFCASAIAFGNCFFFSRIFRICEQ*SNV*SDAD 600
            ASS+F  AS   FC SA AF N FF +      E  S+   D+D
Sbjct: 4193 ASSVFS*ASVVIFCCSARAFDNIFFSASRVSFLELVSSSSFDSD 4062



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>LOC_Os04g35580:12004.t03228:unspliced-genomic expressed protein|
          Length = 1133

 Score = 33.6 bits (67), Expect = 5.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1 / +1

                                                         
Query: 673 KAIAEAQKAVDEAGKKIEEAVLAGGTVQEIKHQDENVQGMDIDGAG 810
           +A ++A +  +E GKK EEA  A     E+   D +  G D  G G
Sbjct: 346 EATSDAGRREEEEGKKEEEATAAAAATGELSRGDGDEDGGDHGGGG 483



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>LOC_Os06g07996:12006.t00682:unspliced-genomic ribosomal protein S15 containing protein|
          Length = 2720

 Score = 33.1 bits (66), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3 / +2

                                               
Query: 663 TITKSNCRGTKGCG*SWKKN*RSSIGWRNGSGDKTS 770
           T T S+ R +  CG  W +  RS   WR+ +GD  S
Sbjct: 623 TATMSSARSSVNCGHRWVRMGRSGSPWRS*AGDSRS 730



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>LOC_Os06g07896:12006.t00672:unspliced-genomic ribosomal protein S15 containing protein|
          Length = 2720

 Score = 33.1 bits (66), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3 / +2

                                               
Query: 663 TITKSNCRGTKGCG*SWKKN*RSSIGWRNGSGDKTS 770
           T T S+ R +  CG  W +  RS   WR+ +GD  S
Sbjct: 623 TATMSSARSSVNCGHRWVRMGRSGSPWRS*AGDSRS 730



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>LOC_Os01g50690:12001.t04503:unspliced-genomic expressed protein|
          Length = 9427

 Score = 33.1 bits (66), Expect = 6.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3 / +3

                                           
Query: 612  SNIGSLFTNSEYAGKEKTITKSNCRGTKGCG 704
            SN   LF  S    KEK I ++ CR +KGCG
Sbjct: 3375 SNGCGLFIGSNL*FKEKNIEEAQCRCSKGCG 3467



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>LOC_Os12g22090:12012.t01948:unspliced-genomic expressed protein|
          Length = 7387

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1 / +1

                                 
Query: 877  PHPVDDLITVCMYVRVPIGHL 939
            PH V  L TVC Y+ +P+GH+
Sbjct: 5008 PHMVTRLCTVCFYLLLPLGHV 5070



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>LOC_Os11g36390:12011.t03186:unspliced-genomic replication factor C subunit 1, putative, expressed|
          Length = 9860

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2 / +1

                                 
Query: 1814 HVHPLIHLNRIKLKLKCLYVS 1876
            H HPLI   R++ K  CLY+S
Sbjct: 9613 HEHPLIFWGRMRFKFSCLYIS 9675



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>LOC_Os08g20000:12008.t01818:unspliced-genomic NB-ARC domain containing protein, expressed|
          Length = 7218

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1 / +1

                                             
Query: 1804 HNYNYNINCNIDQGYTCMELRWNK*GKIETNSL 1706
            H Y  N N +  Q +TC++ +WNK  + E   L
Sbjct: 1300 HMYEVNHNQSSSQQHTCLQSKWNKAKRFELTGL 1398



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>LOC_Os05g50710:12005.t04501:unspliced-genomic late embryogenesis abundant protein Lea14-A, putative, expressed|
          Length = 1333

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1 / +3

                                                              
Query: 1396 WTFNMAGTTPTTTFQVELLVSYSSSAI*NPYTPVPGFHIISPHQRSSSNY 1247
            W    AGT  +TT       S S S+  +P    P     SPH R+ SNY
Sbjct: 903  W*RTWAGTGTSTTSSTSASPSTSPSSATSPSRSPPAAR*SSPHSRTCSNY 1052



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>LOC_Os03g36560:12003.t03125:unspliced-genomic peroxidase 27 precursor, putative, expressed|
          Length = 5586

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2 / -1

                                            
Query: 1341 WCHILRVRFETHILLYQVSILYHHTNDRPPII 1246
            WC+  R++ +TH +++    L+  T   PP I
Sbjct: 4575 WCY*PRIKIKTHYIIHSTDPLFPSTQQTPPSI 4480



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>LOC_Os01g62070:12001.t05583:unspliced-genomic metal tolerance protein C3, putative, expressed|
          Length = 5220

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2 / +1

                                            
Query: 1058 SHIELIIYVKSLHLRILRSWFFAYLYSTCL*H 1153
            SH  LI  +  L LRI+RS +  Y+Y+T L*+
Sbjct: 4522 SHFTLIYGLLLLRLRIMRSVYSVYIYATLL*N 4617



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>LOC_Os04g51090:12004.t04587:unspliced-genomic expressed protein|
          Length = 14055

 Score = 26.7 bits (52), Expect(2) = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2 / +1

                                         
Query: 786  LYIFILMFYLLNRSSSQYCFFNFFSSFIH 700
            L + I+  +LL+      CFF+F SSF H
Sbjct: 9673 LVMLIVWPFLLDN*YVDLCFFSFSSSFQH 9759



 Score = 22.6 bits (43), Expect(2) = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1 / +3

                         
Query: 817  IMFQHHQYPSLVH 779
            IMF H +Y +LVH
Sbjct: 9606 IMFGHVEYSTLVH 9644


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 776,483,297
Number of extensions: 12021603
Number of successful extensions: 42771
Number of sequences better than 10.0: 18
Length of query: 669
Length of database: 55,613,886
Length adjustment: 52
Effective length of query: 617
Effective length of database: 52,687,430
Effective search space: 32508144310
Effective search space used: 32508144310
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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