ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf47m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q505D9:TRI67_MOUSE Tripartite motif-containing protein 67 - Mus ... 35 1.5
2Q5M9B1:SPSB3_XENLA SPRY domain-containing SOCS box protein 3 - X... 34 2.0
3Q9A9A7:RECA_CAUCR Protein recA - Caulobacter crescentus (Cauloba... 33 3.4
4Q8P040:SYV_STRP8 Valyl-tRNA synthetase - Streptococcus pyogenes ... 32 9.9
5Q5XAW8:SYV_STRP6 Valyl-tRNA synthetase - Streptococcus pyogenes ... 32 9.9
6O35608:ANGP2_MOUSE Angiopoietin-2 precursor - Mus musculus (Mouse) 32 9.9

>Q505D9:TRI67_MOUSE Tripartite motif-containing protein 67 - Mus musculus (Mouse)|
          Length = 768
 Score = 34.7 bits (78), Expect = 1.5
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 1571 QGDRIGIQCDTDKHSITFYQNGRRVGDT-YTDVNESVCPAVCIAGNQTVRLDFPSLVP 1741
            +G  +G+  D +KH++TF+ NG++ G T ++ V+    PA+ +  N  V L     VP
Sbjct: 700  KGATVGVLLDLNKHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVP 757



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>Q5M9B1:SPSB3_XENLA SPRY domain-containing SOCS box protein 3 - Xenopus laevis (African|
            clawed frog)
          Length = 360

 Score = 34.3 bits (77), Expect = 2.0
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 1571 QGDRIGIQCDTDKHSITFYQNGRRVGDTYTDV-NESVCPAVC 1693
            QG  IG+  DT    +TFY+N +R+G   T + N+ + P VC
Sbjct: 216  QGSIIGVHLDTWHGVLTFYKNRKRIGVAATQLRNKKLFPLVC 257



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>Q9A9A7:RECA_CAUCR Protein recA - Caulobacter crescentus (Caulobacter vibrioides)|
          Length = 356

 Score = 33.5 bits (75), Expect = 3.4
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 643 NMREKKKQLPKAIAEAQKAVDEAGKKIEEAVLAGG 747
           N+RE  K  P   A+ +KAV ++ +KIEE +L GG
Sbjct: 315 NVREFLKNNPDVAADIEKAVRKSSQKIEEELLVGG 349



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>Q8P040:SYV_STRP8 Valyl-tRNA synthetase - Streptococcus pyogenes serotype M18|
          Length = 882

 Score = 32.0 bits (71), Expect = 9.9
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 631  SQILNMREKKKQLPKAIAEAQKAVDEAGKKIEEAVLAGGTVQEIKHQDENVQG---MDID 801
            + +LN+ E+  +L K +A+ QK +D  GKK+           E+  ++++ Q       D
Sbjct: 809  ADLLNVEEELARLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYD 868

Query: 802  GAGTLFWELHKL 837
                   E+HKL
Sbjct: 869  ATQERIAEMHKL 880



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>Q5XAW8:SYV_STRP6 Valyl-tRNA synthetase - Streptococcus pyogenes serotype M6|
          Length = 882

 Score = 32.0 bits (71), Expect = 9.9
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 631  SQILNMREKKKQLPKAIAEAQKAVDEAGKKIEEAVLAGGTVQEIKHQDENVQG---MDID 801
            + +LN+ E+  +L K +A+ QK +D  GKK+           E+  ++++ Q       D
Sbjct: 809  ADLLNVEEELARLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYD 868

Query: 802  GAGTLFWELHKL 837
                   E+HKL
Sbjct: 869  ATQERIVEMHKL 880



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>O35608:ANGP2_MOUSE Angiopoietin-2 precursor - Mus musculus (Mouse)|
          Length = 496

 Score = 32.0 bits (71), Expect = 9.9
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 625 HCSQILNMREKKKQLPKAIAEAQKAVDEAGKKIEEAVLAGGTVQEIKH 768
           H  Q+ +M+E+K +L   +++    +DE  KK+  A +    +Q+ +H
Sbjct: 202 HSEQLQSMKEQKDELQVLVSKQSSVIDELEKKLVTATVNNSLLQKQQH 249


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 324,571,462
Number of extensions: 6649423
Number of successful extensions: 16121
Number of sequences better than 10.0: 6
Number of HSP's gapped: 16113
Number of HSP's successfully gapped: 6
Length of query: 669
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 549
Effective length of database: 67,771,039
Effective search space: 37206300411
Effective search space used: 37206300411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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