>Q8W4A5:APO2_ARATH APO protein 2, chloroplast precursor - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 440
 Score =  483 bits (1244), Expect = e-136
 Identities = 221/370 (59%), Positives = 284/370 (76%), Gaps = 2/370 (0%)
 Frame = +3

Query: 279  IIIRNDNSQNADFPRNYSKREKKPFPIPVLELRRRARQRMKEAEGXXXXXXXXXXNGMLV 458
            +++RND  QN D P+ Y++REKKPFP+P+++LRR AR+R+K  +           NGM+V
Sbjct: 71   LVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKNNKDKPKRPLPPPKNGMVV 130

Query: 459  QRLIPEAYRVYNARILLINNLKRLMKVVPVKGCKYCSEIHVGSVGHPFRTCRGMSSDKRK 638
            + L+P AY+VYNARI LINNL RLMKVV V  C +C+EIHVG  GHPF++C+G ++ +RK
Sbjct: 131  KSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRK 190

Query: 639  GEHDWGSTFVEAVFLPVEAYHLEDRLGPRIPHDQRFEVPRIPALVELCIQAGLDLPEYPT 818
            G H+W ++ +E V +P+EAYHL DRLG RI HD+RF +PR+PA+VELCIQ G+++PE+P 
Sbjct: 191  GLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPA 250

Query: 819  KRRRKPIVKIGRKEFVDANEDDLPDPEPDKFKEPILEEVPDDEIIXXXXXXXXXXXXXXX 998
            KRRRKPI++IG+ EFVDA+E +LPDPEP     P+L E+P  EI                
Sbjct: 251  KRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEET 310

Query: 999  XVVWETLRNGALRLMKRYSVRVCGYCPEVHIGASGHKARNCGAFKHQQRNGQHGWQAAVL 1178
               WE +R GA +LM+ Y VRVCGYCPEVH+G +GHKA+NCGAFKHQQRNGQHGWQ+AVL
Sbjct: 311  LQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVL 370

Query: 1179 DDLIPPRYVWHMPE--SGELQKELKSFYGQAPAVVELCIQGGAQVPEKYKATMRLDIGIP 1352
            DDLIPPRYVWH+P+     +Q+EL+SFYGQAPAVVE+C Q GA VPE Y+ATMRL++GIP
Sbjct: 371  DDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIP 430

Query: 1353 SSLKEAEMVV 1382
            SS+KEAEMVV
Sbjct: 431  SSVKEAEMVV 440

>Q9XIR4:APO1_ARATH APO protein 1, chloroplast precursor - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 436

 Score =  298 bits (764), Expect = 3e-80
 Identities = 152/369 (41%), Positives = 221/369 (59%), Gaps = 8/369 (2%)
 Frame = +3

Query: 297  NSQNADFPRNYSKREKKPFPIPVLELRRRARQRMKEAEGXXXXXXXXXXNGMLVQRLIPE 476
            ++QN D P    K +KKP+PIP  +++  AR+  K A+           NG+LV  L+P 
Sbjct: 70   STQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLDPPKNGLLVPNLVPV 129

Query: 477  AYRVYNARILLINNLKRLMKVVPVKGCKYCSEIHVGSVGHPFRTCRGMSSDKRKGEHDWG 656
            A +V +   LLI  L +L+ VVPV  C  C  +HV +VGH  R C G ++ +R+G H W 
Sbjct: 130  ADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWV 189

Query: 657  STFVEAVFLPVEAYHLEDRLGPRIPHDQRFEVPRIPALVELCIQAGLDLPEYPTKRRRKP 836
               +  V +PVE+YH+ D  G RI H+ RFE  RIPALVELCIQAG+++PEYP +RR +P
Sbjct: 190  KGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQP 249

Query: 837  IVKIGRKEFVDANEDDLPDPEPDKFKEPILEEVPDDEIIXXXXXXXXXXXXXXXXVVWET 1016
            I  +G K  +D       +PE  +    +   + + + +                +  ET
Sbjct: 250  IRMMG-KRVIDRGGYH-KEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIPKIAQET 307

Query: 1017 L------RNGALRLMKRYSVRVCGYCPEVHIGASGHKARNCGAFKHQQRNGQHGWQAAVL 1178
            +      R G  +LM++++V+ CGYC EVH+G  GH  + CG FKHQ R+G+HGWQ A++
Sbjct: 308  MDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALV 367

Query: 1179 DDLIPPRYVWHMPE--SGELQKELKSFYGQAPAVVELCIQGGAQVPEKYKATMRLDIGIP 1352
            D++ PP YVWH+ +     L   L+ FYG+APA+VE+C+  GA+VP++YKA MRLDI +P
Sbjct: 368  DEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIVP 427

Query: 1353 SSLKEAEMV 1379
             S +EA+MV
Sbjct: 428  DS-QEADMV 435

>Q9FH50:APO3_ARATH APO protein 3, mitochondrial precursor - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 402

 Score =  265 bits (677), Expect = 4e-70
 Identities = 149/380 (39%), Positives = 207/380 (54%), Gaps = 27/380 (7%)
 Frame = +3

Query: 294  DNSQN---ADFPRN-YSKREKKPFPIPVLELRRRARQRMKEAE-GXXXXXXXXXXNGMLV 458
            DN ++   AD P+    K E+KP+P P+ EL RRA++  +  +            NG+LV
Sbjct: 36   DNDEDPLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLV 95

Query: 459  QRLIPEAYRVYNARILLINNLKRLMKVVPVKGCKYCSEIHVGSVGHPFRTCRGMSSDKRK 638
              L+  A+ V+  R +L++ L +++  VPV  C+ C+E+H+G  GH  RTC G  S  R 
Sbjct: 96   PELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRS 155

Query: 639  GEHDWGSTFVEAVFLPVEAYHLEDR-LGPRIPHDQRFEVPRIPALVELCIQAGLDLPEYP 815
              H W    V  V L  + +HL DR + PR+ HD+RF VP+I A++ELCIQAG+DL ++P
Sbjct: 156  ATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFP 215

Query: 816  TKRRRKPIVKIGRK--EFVDAN----------------EDDLPDPEPDKFKEPILEEVPD 941
            +KRR KP+  I  +  +F D N                EDD    E    KE   E +  
Sbjct: 216  SKRRSKPVYSIEGRIVDFEDVNDGNSELAVTSTTTLIQEDDRCKEEKKSLKELSFETMES 275

Query: 942  DEIIXXXXXXXXXXXXXXXXVVWETLRNGALRLMKRYSVRVCGYCPEVHIGASGHKARNC 1121
                                  W  +  G  +LM+RY V  CGYCPE+ +G  GHK R C
Sbjct: 276  ----------------------WFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMC 313

Query: 1122 GAFKHQQRNGQHGWQAAVLDDLIPPRYVWHM--PESGE-LQKELKSFYGQAPAVVELCIQ 1292
             A KHQ R+G H WQ A +DD++ P YVWH+  P  G  L   LK FYG+APAV+E+C+Q
Sbjct: 314  KATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQ 373

Query: 1293 GGAQVPEKYKATMRLDIGIP 1352
            GGA VP++Y + MRLD+  P
Sbjct: 374  GGAPVPDQYNSMMRLDVVYP 393



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
 Frame = +3

Query: 507 LINNLKRLMKVVPVKGCKYCSEIHVGSVGHPFRTCRGMSSDKRKGEHDWGSTFVEAVFLP 686
           ++  +++LM+   V  C YC EI VG  GH  R C+      R G H W    ++ V  P
Sbjct: 279 MVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGP 338

Query: 687 VEAYHLEDRL-GPRIPHDQRFEVPRIPALVELCIQAGLDLPEYPTKRRRKPIVKIGRKE 860
              +H+ D   G  + +  +    + PA++E+C+Q G  +P+      R  +V   R E
Sbjct: 339 TYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDE 397

>Q9LSZ0:APO4_ARATH APO protein 4, mitochondrial precursor - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 337

 Score =  181 bits (459), Expect = 8e-45
 Identities = 105/296 (35%), Positives = 150/296 (50%), Gaps = 3/296 (1%)
 Frame = +3

Query: 456  VQRLIPEAYRVYNARILLINNLKRLMKVVPVKGCKYCSEIHVGSVGHPFRTCRGMSSDKR 635
            V+ ++P A  +  AR  LI+N+  L+KV PV  CK+CSE+ VG  GH   TCR       
Sbjct: 55   VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114

Query: 636  KGEHDWGSTFVEAVFLPVEAYHLEDRLGPRIPHDQRFEVPRIPALVELCIQAGLDLPEYP 815
               H+W    +  + +PVE+YHL +     I H +RF+  R+PA++ELC QAG   PE  
Sbjct: 115  NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 172

Query: 816  TKRRRKPIVKIGRKEFVDANE-DDLPDPEPDKFKEPILEEVPDDEIIXXXXXXXXXXXXX 992
                          E +  +E  D P     +  E  +  +P  ++              
Sbjct: 173  --------------EILQYSEIHDNP-----QISEEDIRSLPAGDL---------KYVGA 204

Query: 993  XXXVVWETLRNGALRLMKRYSVRVCGYCPEVHIGASGHKARNCGAFKHQQRNGQHGWQAA 1172
               + WE +R G  +L+  Y  +VC  C EVH+G SGHKAR CG FK++   G H W+ A
Sbjct: 205  NALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKA 264

Query: 1173 VLDDLIPPRYVWHM--PESGELQKELKSFYGQAPAVVELCIQGGAQVPEKYKATMR 1334
             ++DL+P + VWH    +   L  E +S+YG APA+V LC   GA VP KY   M+
Sbjct: 265  GVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320

>Q5M2U9:MRAY_STRT2 Phospho-N-acetylmuramoyl-pentapeptide-transferase - Streptococcus|
            thermophilus (strain ATCC BAA-250 / LMG 18311)
          Length = 340

 Score = 31.6 bits (70), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 1082 GAHWSEWS*SAQLWSLQAPAEEWTAWM 1162
            G  WSEW   A LW++ A A   T WM
Sbjct: 307  GEKWSEWKVDAFLWTIGALASSITLWM 333

>Q5LY94:MRAY_STRT1 Phospho-N-acetylmuramoyl-pentapeptide-transferase - Streptococcus|
            thermophilus (strain CNRZ 1066)
          Length = 340

 Score = 31.6 bits (70), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 1082 GAHWSEWS*SAQLWSLQAPAEEWTAWM 1162
            G  WSEW   A LW++ A A   T WM
Sbjct: 307  GEKWSEWKVDAFLWTIGALASSITLWM 333

>Q8FPY5:GATB_COREF Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -|
           Corynebacterium efficiens
          Length = 501

 Score = 31.6 bits (70), Expect = 9.9
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = -2

Query: 320 WKISILRIVVSDDDGAITRLGPTGSRRSESRTAANSCDRV*LP-------PDLDAGGRPP 162
           W+I I R  + +D G +T LG T  R   +  +   C+R  +P       P   AG R P
Sbjct: 130 WRIEIERAHMEEDTGKLTHLGGTSGRIHGATASLVDCNRAGVPLIEIVTKPIEGAGARAP 189


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 262,548,855
Number of extensions: 5611460
Number of successful extensions: 16372
Number of sequences better than 10.0: 7
Number of HSP's gapped: 16335
Number of HSP's successfully gapped: 11
Length of query: 537
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 419
Effective length of database: 68,319,629
Effective search space: 28625924551
Effective search space used: 28625924551
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)