ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf38c05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel protein Length = 674 Score = 1298 bits (655), Expect = 0.0 Identities = 661/663 (99%) Strand = Plus / Plus Query: 79 gcgtgccgggtgccagacgagaggaagggaggatgcctaccgcggggctggcggccgggt 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcgtgccgggtgccagacgagaggaagggaggatgcctaccgcggggctggcggccgggt 60 Query: 139 cgaacaaggtggacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacg 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgaacaaggtggacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacg 120 Query: 199 gcttcctcaagatcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgact 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gcttcctcaagatcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgact 180 Query: 259 gcctccacagaggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgca 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gcctccacagaggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgca 240 Query: 319 aggagggtgcatattggggtgctgttgctggggtgtatgtaggcatggagtatggagtgg 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggagggtgcatattggggtgctgttgctggggtgtatgtaggcatggagtatggagtgg 300 Query: 379 aaagggtccgtggtgaccgtgactggaaaaatgcgttgataggaggcattgcaactggtg 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aaagggtccgtggtgaccgtgactggaaaaatgcgttgataggaggcattgcaactggtg 360 Query: 439 ccctggtctctgctgcgagcaacaacaaagggaacaagatcgcccaggacgccatcaccg 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccctggtctctgctgcgagcaacaacaaagggaacaagatcgcccaggacgccatcaccg 420 Query: 499 gaggtgccatcgcgaccgccgtcgagttcatcaactacctcacctagctgtgaggccata 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaggtgccatcgcgaccgccgtcgagttcatcaactacctcacctagctgtgaggccata 480 Query: 559 tccgcggcgatgtttttatcggacaagactgaataagaacttcttgactgaagccatcca 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 tccgcggcgatgtttttatcggacaagactgaataagaacttcttgactgaagccatcca 540 Query: 619 ccctgtgtgttaataattggagctgtttcctccaatgtttttccattttttgttgccggc 678 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 541 ccctgtgtgttaataattggagccgtttcctccaatgtttttccattttttgttgccggc 600 Query: 679 gttctcatgtccatgtacttaacaatttattttactgcgtggtttgaatccttcagttgt 738 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gttctcatgtccatgttcttaacaatttattttactgcgtggtttgaatccttcagttgt 660 Query: 739 gat 741 ||| Sbjct: 661 gat 663
>ref|NM_001060981.1| Oryza sativa (japonica cultivar-group) Os05g0111200 (Os05g0111200) mRNA, complete cds Length = 696 Score = 285 bits (144), Expect = 1e-73 Identities = 330/392 (84%) Strand = Plus / Plus Query: 150 gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 209 ||||| ||||||||| | || ||||| | |||||||||||||||||||||||||||||| Sbjct: 127 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 186 Query: 210 atcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgactgcctccacaga 269 |||||||||||||| || |||| ||| | |||||||||| | |||||||||||||||||| Sbjct: 187 atcggcgccgtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctccacaga 246 Query: 270 ggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgcaaggagggtgca 329 |||||| | || |||| | ||||||| | | ||||||||||||||||||||||||||| Sbjct: 247 ggggatgtttcaaagcacaagcttgagcatatgctgaagaaaatgtgcaaggagggtgcc 306 Query: 330 tattggggtgctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgt 389 ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||| | ||| Sbjct: 307 tattggggtactgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgt 366 Query: 390 ggtgaccgtgactggaaaaatgcgttgataggaggcattgcaactggtgccctggtctct 449 ||| || ||||||||| ||||| |||| ||||| | || |||||| ||| ||||| Sbjct: 367 ggtcgccatgactggaagaatgctatgattggaggtgctttaagtggtgctctgatctct 426 Query: 450 gctgcgagcaacaacaaagggaacaagatcgcccaggacgccatcaccggaggtgccatc 509 ||||| ||||||||| | |||||||| | ||||||||||||||||||| || | Sbjct: 427 gctgccagcaacaaccacaaagacaagatcatcaaggacgccatcaccggaggcgctgtt 486 Query: 510 gcgaccgccgtcgagttcatcaactacctcac 541 || || || ||||||||||||||||||||||| Sbjct: 487 gcaacagctgtcgagttcatcaactacctcac 518
>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full insert sequence Length = 697 Score = 285 bits (144), Expect = 1e-73 Identities = 330/392 (84%) Strand = Plus / Plus Query: 150 gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 209 ||||| ||||||||| | || ||||| | |||||||||||||||||||||||||||||| Sbjct: 128 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 187 Query: 210 atcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgactgcctccacaga 269 |||||||||||||| || |||| ||| | |||||||||| | |||||||||||||||||| Sbjct: 188 atcggcgccgtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctccacaga 247 Query: 270 ggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgcaaggagggtgca 329 |||||| | || |||| | ||||||| | | ||||||||||||||||||||||||||| Sbjct: 248 ggggatgtttcaaagcacaagcttgagcatatgctgaagaaaatgtgcaaggagggtgcc 307 Query: 330 tattggggtgctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgt 389 ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||| | ||| Sbjct: 308 tattggggtactgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgt 367 Query: 390 ggtgaccgtgactggaaaaatgcgttgataggaggcattgcaactggtgccctggtctct 449 ||| || ||||||||| ||||| |||| ||||| | || |||||| ||| ||||| Sbjct: 368 ggtcgccatgactggaagaatgctatgattggaggtgctttaagtggtgctctgatctct 427 Query: 450 gctgcgagcaacaacaaagggaacaagatcgcccaggacgccatcaccggaggtgccatc 509 ||||| ||||||||| | |||||||| | ||||||||||||||||||| || | Sbjct: 428 gctgccagcaacaaccacaaagacaagatcatcaaggacgccatcaccggaggcgctgtt 487 Query: 510 gcgaccgccgtcgagttcatcaactacctcac 541 || || || ||||||||||||||||||||||| Sbjct: 488 gcaacagctgtcgagttcatcaactacctcac 519
>gb|AY104698.1| Zea mays PCO142485 mRNA sequence Length = 678 Score = 198 bits (100), Expect = 2e-47 Identities = 184/212 (86%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtc 239 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 208 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggct 267 Query: 240 gccgaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagag 299 |||||||| ||||||| ||||||||||| |||||| | ||||||| | || |||| | Sbjct: 268 gccgaggagaccttcgagtgcctccacaggggggatgtttcgaagcacaaggttgagcat 327 Query: 300 acgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgta 359 | |||| ||| |||||||||||||| ||||||||||| |||||||||| || ||||| Sbjct: 328 gccctgaggaagatgtgcaaggagggcgcatattggggcactgttgctggagtttatgtg 387 Query: 360 ggcatggagtatggagtggaaagggtccgtgg 391 ||||||| ||| || ||||||||||||||||| Sbjct: 388 ggcatggtgtacggcgtggaaagggtccgtgg 419 Score = 46.1 bits (23), Expect = 0.18 Identities = 44/51 (86%) Strand = Plus / Plus Query: 484 aggacgccatcaccggaggtgccatcgcgaccgccgtcgagttcatcaact 534 ||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct: 512 aggacgccatcaccgccggcgcggtcgccacagccgtcgagttcatcaact 562
>gb|AY107980.1| Zea mays PCO142484 mRNA sequence Length = 690 Score = 192 bits (97), Expect = 1e-45 Identities = 181/209 (86%) Strand = Plus / Plus Query: 183 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtcgcc 242 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 94 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggcggcc 153 Query: 243 gaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagagacg 302 ||||| ||||||||||||||||||| |||||| | || |||||| || |||| | | Sbjct: 154 gaggagaccttcgactgcctccacaggggggatgtttcaaagcgcaaggttgagcatgcc 213 Query: 303 ctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgtaggc 362 |||||||| |||||||||||||| ||||||||||| |||||||||| || || || ||| Sbjct: 214 ctgaagaagatgtgcaaggagggcgcatattgggggactgttgctggcgtctacgtgggc 273 Query: 363 atggagtatggagtggaaagggtccgtgg 391 ||| |||||| ||||| ||||||||||| Sbjct: 274 gtggtgtatggcgtggagagggtccgtgg 302 Score = 73.8 bits (37), Expect = 8e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 472 acaagatcgcccaggacgccatcaccggaggtgccatcgcgaccgccgtcgagttcatca 531 ||||||||| | ||||||||||||||| || ||| |||| || |||||||||||| || Sbjct: 383 acaagatcgtcaaggacgccatcaccgccggcgccgtcgcaacggccgtcgagttcgcca 442 Query: 532 actacctcacctagctg 548 ||||||||||||||||| Sbjct: 443 actacctcacctagctg 459
>emb|CT832369.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P23, full insert sequence Length = 622 Score = 111 bits (56), Expect = 4e-21 Identities = 187/228 (82%), Gaps = 2/228 (0%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtc 239 |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| | Sbjct: 106 ctcaaccgcaccgtcgacggcttcctcaagattggcgctgttggggcttgcaaggtcgct 165 Query: 240 gccgaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagag 299 ||||| || ||||||| ||||| ||||||||||| |||| |||| | | |||| ||| Sbjct: 166 gccgaagagaccttcgagtgccttcacagaggggacgtctcaaagcacaaagttga-gag 224 Query: 300 a-cgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgt 358 | || ||||||||||||||||| || |||||||||||| || |||| || || ||||| Sbjct: 225 tgcactcaagaaaatgtgcaaggaaggcgcatattggggtactattgcgggtgtatatgt 284 Query: 359 aggcatggagtatggagtggaaagggtccgtggtgaccgtgactggaa 406 ||||||||||||||| | ||||| |||||||| || | |||||||| Sbjct: 285 gggcatggagtatggaatcgaaagaatccgtggtcacagggactggaa 332
>ref|NM_001052086.1| Oryza sativa (japonica cultivar-group) Os01g0974100 (Os01g0974100) mRNA, partial cds Length = 781 Score = 99.6 bits (50), Expect = 1e-17 Identities = 175/214 (81%), Gaps = 2/214 (0%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtc 239 |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| | Sbjct: 108 ctcaaccgcaccgtcgacggcttcctcaagattggcgctgttggggcttgcaaggtcgct 167 Query: 240 gccgaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagag 299 ||||| || ||||||| ||||| ||||||||||| |||| |||| | | ||| |||| Sbjct: 168 gccgaagagaccttcgagtgccttcacagaggggacgtctcaaagcacaaagttg-agag 226 Query: 300 -acgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgt 358 | || |||||||| |||||||| || |||||||||||| || |||| || || ||||| Sbjct: 227 tgcactcaagaaaatttgcaaggaaggcgcatattggggtactattgcgggtgtatatgt 286 Query: 359 aggcatggagtatggagtggaaagggtccgtggt 392 ||||||||||||||| | ||||| |||||||| Sbjct: 287 gggcatggagtatggaatcgaaagaatccgtggt 320
>dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082P21, full insert sequence Length = 784 Score = 99.6 bits (50), Expect = 1e-17 Identities = 175/214 (81%), Gaps = 2/214 (0%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtc 239 |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| | Sbjct: 111 ctcaaccgcaccgtcgacggcttcctcaagattggcgctgttggggcttgcaaggtcgct 170 Query: 240 gccgaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagag 299 ||||| || ||||||| ||||| ||||||||||| |||| |||| | | ||| |||| Sbjct: 171 gccgaagagaccttcgagtgccttcacagaggggacgtctcaaagcacaaagttg-agag 229 Query: 300 -acgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgt 358 | || |||||||| |||||||| || |||||||||||| || |||| || || ||||| Sbjct: 230 tgcactcaagaaaatttgcaaggaaggcgcatattggggtactattgcgggtgtatatgt 289 Query: 359 aggcatggagtatggagtggaaagggtccgtggt 392 ||||||||||||||| | ||||| |||||||| Sbjct: 290 gggcatggagtatggaatcgaaagaatccgtggt 323
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 150 gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 209 ||||| ||||||||| | || ||||| | |||||||||||||||||||||||||||||| Sbjct: 86521 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 86580 Query: 210 atcggcgccgt 220 ||||||||||| Sbjct: 86581 atcggcgccgt 86591 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 302 gctgaagaaaatgtgcaaggagggtgcatattggggt 338 ||||||||||||||||||||||||||| ||||||||| Sbjct: 87908 gctgaagaaaatgtgcaaggagggtgcctattggggt 87944 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 340 ctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgtggt 392 ||||||||||||||||||| ||||||||||| |||||||| ||| | |||||| Sbjct: 88082 ctgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgtggt 88134 Score = 63.9 bits (32), Expect = 8e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 434 tggtgccctggtctctgctgcgagcaacaacaaagggaacaagatcgcccaggacgccat 493 |||||| ||| |||||||||| ||||||||| | |||||||| | |||||||||| Sbjct: 88955 tggtgctctgatctctgctgccagcaacaaccacaaagacaagatcatcaaggacgccat 89014 Query: 494 caccggaggtgccatcgcgaccgccgtcgagttcatcaactacctcac 541 ||||||||| || | || || || ||||||||||||||||||||||| Sbjct: 89015 caccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 89062 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 239 cgccgaggacgccttcgactgcctccacagagg 271 |||||||||| | |||||||||||||||||||| Sbjct: 86704 cgccgaggacacattcgactgcctccacagagg 86736
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 150 gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 209 ||||| ||||||||| | || ||||| | |||||||||||||||||||||||||||||| Sbjct: 569122 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 569181 Query: 210 atcggcgccgt 220 ||||||||||| Sbjct: 569182 atcggcgccgt 569192 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 302 gctgaagaaaatgtgcaaggagggtgcatattggggt 338 ||||||||||||||||||||||||||| ||||||||| Sbjct: 570509 gctgaagaaaatgtgcaaggagggtgcctattggggt 570545 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 340 ctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgtggt 392 ||||||||||||||||||| ||||||||||| |||||||| ||| | |||||| Sbjct: 570683 ctgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgtggt 570735 Score = 63.9 bits (32), Expect = 8e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 434 tggtgccctggtctctgctgcgagcaacaacaaagggaacaagatcgcccaggacgccat 493 |||||| ||| |||||||||| ||||||||| | |||||||| | |||||||||| Sbjct: 571556 tggtgctctgatctctgctgccagcaacaaccacaaagacaagatcatcaaggacgccat 571615 Query: 494 caccggaggtgccatcgcgaccgccgtcgagttcatcaactacctcac 541 ||||||||| || | || || || ||||||||||||||||||||||| Sbjct: 571616 caccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 571663 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 239 cgccgaggacgccttcgactgcctccacagagg 271 |||||||||| | |||||||||||||||||||| Sbjct: 569305 cgccgaggacacattcgactgcctccacagagg 569337
>gb|BT019074.1| Zea mays clone Contig647.F mRNA sequence Length = 774 Score = 73.8 bits (37), Expect = 8e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 312 atgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgtaggcatggagtat 371 |||||||||| ||| ||||||||||| ||||||||||||| ||||| ||||||| ||| Sbjct: 432 atgtgcaaggggggggcatattggggccctgttgctggggtttatgtgggcatggtgtag 373 Query: 372 ggagtggaaagggtccg 388 || | |||||||||||| Sbjct: 372 gggggggaaagggtccg 356
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 67.9 bits (34), Expect = 5e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 217 |||||||||||||||||||||||||||||||| ||||| Sbjct: 43036666 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 43036703 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 306 aagaaaatgtgcaaggagggtgcatattggggt 338 |||||||| |||||||| || |||||||||||| Sbjct: 43037346 aagaaaatttgcaaggaaggcgcatattggggt 43037378
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 67.9 bits (34), Expect = 5e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 217 |||||||||||||||||||||||||||||||| ||||| Sbjct: 33695 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 33732 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 306 aagaaaatgtgcaaggagggtgcatattggggt 338 |||||||| |||||||| || |||||||||||| Sbjct: 34375 aagaaaatttgcaaggaaggcgcatattggggt 34407
>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698H10 Length = 153449 Score = 67.9 bits (34), Expect = 5e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 217 |||||||||||||||||||||||||||||||| ||||| Sbjct: 137545 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 137582 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 306 aagaaaatgtgcaaggagggtgcatattggggt 338 |||||||| |||||||| || |||||||||||| Sbjct: 138225 aagaaaatttgcaaggaaggcgcatattggggt 138257
>dbj|AB041032.1| Oryza sativa gene for metallothionein-like protein, complete cds Length = 4072 Score = 67.9 bits (34), Expect = 5e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 180 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 217 |||||||||||||||||||||||||||||||| ||||| Sbjct: 102 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 139 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 306 aagaaaatgtgcaaggagggtgcatattggggt 338 |||||||| |||||||| || |||||||||||| Sbjct: 783 aagaaaatttgcaaggaaggcgcatattggggt 815
>emb|X94304.1|STPOM14 S.tuberosum mRNA for POM14 protein Length = 537 Score = 63.9 bits (32), Expect = 8e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 304 tgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgtaggca 363 ||||||||||||| || || ||||| |||||||| ||||||||||||| |||| || | Sbjct: 206 tgaagaaaatgtgtaaagaaggtgcttattgggggactgttgctggggtatatgctggaa 265 Query: 364 tggagtatggag 375 |||||||||||| Sbjct: 266 tggagtatggag 277
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds Length = 777 Score = 50.1 bits (25), Expect = 0.012 Identities = 28/29 (96%) Strand = Plus / Minus Query: 160 tcgacctcggcaacccgctgctcaaccgc 188 ||||||||||| ||||||||||||||||| Sbjct: 654 tcgacctcggccacccgctgctcaaccgc 626
>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence Length = 868 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Plus Query: 162 gacctcggcaacccgctgctcaaccgc 188 ||||||||| ||||||||||||||||| Sbjct: 170 gacctcggccacccgctgctcaaccgc 196
>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence Length = 802 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 162 gacctcggcaacccgctgctcaaccgc 188 ||||||||| ||||||||||||||||| Sbjct: 648 gacctcggccacccgctgctcaaccgc 622
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 44.1 bits (22), Expect = 0.72 Identities = 25/26 (96%) Strand = Plus / Minus Query: 161 cgacctcggcaacccgctgctcaacc 186 ||||| |||||||||||||||||||| Sbjct: 48097 cgaccccggcaacccgctgctcaacc 48072
>ref|NM_001056419.1| Oryza sativa (japonica cultivar-group) Os03g0305600 (Os03g0305600) mRNA, complete cds Length = 839 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 160 tcgacctcggcaacccgctgctcaaccgc 188 ||||||||||| ||||||| ||||||||| Sbjct: 178 tcgacctcggccacccgctcctcaaccgc 206
>gb|AY135660.1| Aquifex pyrophilus hydrogenase small subunit (mbhS1) gene, partial cds; and hypothetical protein, phosphatidate cytidylytransferase (cds), undecaprenyl pyrophosphate (yaes), hypothetical protein, 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase (kdsA), molybdenum transport system permease (modB), riboflavin synthase beta subunit (ribH), transcription termination factor (nusB), hypothetical protein, NADH dehydrogenase (nuo), cytochrome c peroxidase (ccpR), heat shock protein 70 (dnaK), and hypothetical protein genes, complete cds Length = 12698 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 aggaagggaggatgcctaccg 120 ||||||||||||||||||||| Sbjct: 6318 aggaagggaggatgcctaccg 6298
>gb|AC140283.3| Mus musculus BAC clone RP24-510I14 from chromosome 18, complete sequence Length = 149264 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 694 tacttaacaatttattttact 714 ||||||||||||||||||||| Sbjct: 38064 tacttaacaatttattttact 38084
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 160 tcgacctcggcaacccgctgctcaaccgc 188 ||||||||||| ||||||| ||||||||| Sbjct: 34365 tcgacctcggccacccgctcctcaaccgc 34337
>gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, complete sequence Length = 201073 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 694 tacttaacaatttattttact 714 ||||||||||||||||||||| Sbjct: 16772 tacttaacaatttattttact 16752
>gb|AC116071.5| Rattus norvegicus 3 BAC CH230-230O7 (Children's Hospital Oakland Research Institute) complete sequence Length = 224778 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 646 tcctccaatgtttttccattt 666 ||||||||||||||||||||| Sbjct: 166219 tcctccaatgtttttccattt 166199
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 ctcaagatcggcgccgtcggc 224 ||||||||||||||||||||| Sbjct: 35153080 ctcaagatcggcgccgtcggc 35153100
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 160 tcgacctcggcaacccgctgctcaaccgc 188 ||||||||||| ||||||| ||||||||| Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgc 10818651
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 gccatcgcgaccgccgtcgag 524 ||||||||||||||||||||| Sbjct: 232789 gccatcgcgaccgccgtcgag 232769
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 ctcaagatcggcgccgtcggc 224 ||||||||||||||||||||| Sbjct: 48436 ctcaagatcggcgccgtcggc 48456
>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence Length = 839 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 160 tcgacctcggcaacccgctgctcaaccgc 188 ||||||||||| ||||||| ||||||||| Sbjct: 178 tcgacctcggccacccgctcctcaaccgc 206
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 tccaatgtttttccatttttt 669 ||||||||||||||||||||| Sbjct: 2361332 tccaatgtttttccatttttt 2361352 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 tccaatgtttttccatttttt 669 ||||||||||||||||||||| Sbjct: 2361459 tccaatgtttttccatttttt 2361479
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 160 tcgacctcggcaacccgctgctcaaccgc 188 ||||||||||| ||||||| ||||||||| Sbjct: 141 tcgacctcggccacccgctcctcaaccgc 169
>emb|AL671923.15| Mouse DNA sequence from clone RP23-322C16 on chromosome X, complete sequence Length = 213730 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 aaatgtgcaaggagggtgcat 330 ||||||||||||||||||||| Sbjct: 23428 aaatgtgcaaggagggtgcat 23448 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 120,098,189 Number of extensions: 6472109 Number of successful extensions: 168135 Number of sequences better than 10.0: 34 Number of HSP's gapped: 168126 Number of HSP's successfully gapped: 54 Length of query: 760 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 738 Effective length of database: 18,508,616,841 Effective search space: 13659359228658 Effective search space used: 13659359228658 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
