ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf38c03 |
|---|---|
| Clone Library Name | barley_pub |
>Q5RCP3:LSM8_PONPY U6 snRNA-associated Sm-like protein LSm8 - Pongo pygmaeus| (Orangutan) Length = 96 Score = 130 bits (327), Expect = 5e-30 Identities = 57/94 (60%), Positives = 80/94 (85%) Frame = +2 Query: 152 ATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 331 + LE+ +++ ++VIT+DGR IVGTL+GFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+ Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62 Query: 332 RGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 433 RGDN+ V+GE+DEE D+ALD+ +RA+PL V H Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>Q6ZWM4:LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 - Mus musculus (Mouse)| Length = 96 Score = 130 bits (327), Expect = 5e-30 Identities = 57/94 (60%), Positives = 80/94 (85%) Frame = +2 Query: 152 ATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 331 + LE+ +++ ++VIT+DGR IVGTL+GFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+ Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62 Query: 332 RGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 433 RGDN+ V+GE+DEE D+ALD+ +RA+PL V H Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>O95777:LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 - Homo sapiens (Human)| Length = 96 Score = 130 bits (327), Expect = 5e-30 Identities = 57/94 (60%), Positives = 80/94 (85%) Frame = +2 Query: 152 ATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 331 + LE+ +++ ++VIT+DGR IVGTL+GFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+ Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62 Query: 332 RGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 433 RGDN+ V+GE+DEE D+ALD+ +RA+PL V H Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>Q3ZCE0:LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 - Bos taurus (Bovine)| Length = 96 Score = 130 bits (327), Expect = 5e-30 Identities = 57/94 (60%), Positives = 80/94 (85%) Frame = +2 Query: 152 ATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 331 + LE+ +++ ++VIT+DGR IVGTL+GFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+ Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62 Query: 332 RGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 433 RGDN+ V+GE+DEE D+ALD+ +RA+PL V H Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>O74483:LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 - Schizosaccharomyces| pombe (Fission yeast) Length = 94 Score = 94.0 bits (232), Expect = 6e-19 Identities = 39/93 (41%), Positives = 69/93 (74%) Frame = +2 Query: 155 TLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 334 +L ++Q + VITNDGR ++G+L+GFD TN+IL +S ER+ S + ++ + LG+Y++R Sbjct: 2 SLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLR 61 Query: 335 GDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH 433 G+N+ +VG V+EELD+ ++ +K+R + + V+H Sbjct: 62 GENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>P87173:YB18_SCHPO Uncharacterized protein C3D6.08c - Schizosaccharomyces pombe| (Fission yeast) Length = 140 Score = 63.5 bits (153), Expect = 8e-10 Identities = 32/93 (34%), Positives = 58/93 (62%), Gaps = 2/93 (2%) Frame = +2 Query: 155 TLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 334 +L VD+ + V+ DG+ ++G LR FDQ N++L + ER+Y + + G+YI+R Sbjct: 15 SLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIY-VDDMYGDIDRGVYIVR 73 Query: 335 GDNIGVVGE--VDEELDAALDMSKLRAQPLKPV 427 G+N+ ++GE +D+E DA + ++ A+ L P+ Sbjct: 74 GENVVLLGELDLDKEYDAVKQLRRMPAEELYPL 106
>P47017:LSM1_YEAST Sm-like protein LSm1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 172 Score = 59.7 bits (143), Expect = 1e-08 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Frame = +2 Query: 152 ATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEG-VQQLVLGLYI 328 A + S VD+ I V+ DGR + G LR FDQ N+IL + ER+Y ++E + G+++ Sbjct: 44 AAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFM 103 Query: 329 IRGDNIGVVGEVD 367 IRG+N+ ++GEVD Sbjct: 104 IRGENVVMLGEVD 116
>Q8VC85:LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 - Mus musculus (Mouse)| Length = 133 Score = 56.6 bits (135), Expect = 1e-07 Identities = 26/91 (28%), Positives = 56/91 (61%) Frame = +2 Query: 146 GMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLY 325 G A+L +D+ V+ DGR ++G LR DQ N++L ++ ER++ K+ + G++ Sbjct: 6 GTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIF 64 Query: 326 IIRGDNIGVVGEVDEELDAALDMSKLRAQPL 418 ++RG+N+ ++GE+D E ++ + ++ + + Sbjct: 65 VVRGENVVLLGEIDLEKESDTPLQQVSIEEI 95
>O15116:LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 - Homo sapiens (Human)| Length = 133 Score = 56.6 bits (135), Expect = 1e-07 Identities = 26/91 (28%), Positives = 56/91 (61%) Frame = +2 Query: 146 GMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLY 325 G A+L +D+ V+ DGR ++G LR DQ N++L ++ ER++ K+ + G++ Sbjct: 6 GTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIF 64 Query: 326 IIRGDNIGVVGEVDEELDAALDMSKLRAQPL 418 ++RG+N+ ++GE+D E ++ + ++ + + Sbjct: 65 VVRGENVVLLGEIDLEKESDTPLQQVSIEEI 95
>Q5E9Z8:LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 - Bos taurus (Bovine)| Length = 133 Score = 56.6 bits (135), Expect = 1e-07 Identities = 26/91 (28%), Positives = 56/91 (61%) Frame = +2 Query: 146 GMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLY 325 G A+L +D+ V+ DGR ++G LR DQ N++L ++ ER++ K+ + G++ Sbjct: 6 GTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIF 64 Query: 326 IIRGDNIGVVGEVDEELDAALDMSKLRAQPL 418 ++RG+N+ ++GE+D E ++ + ++ + + Sbjct: 65 VVRGENVVLLGEIDLEKESDTPLQQVSIEEI 95
>P62309:RUXG_MOUSE Small nuclear ribonucleoprotein G - Mus musculus (Mouse)| Length = 76 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/63 (38%), Positives = 39/63 (61%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ +D+ +S+ N GR++ G LRGFD N+++DE E S QQ +G+ +IRG Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQNNIGMVVIRG 64 Query: 338 DNI 346 ++I Sbjct: 65 NSI 67
>P62308:RUXG_HUMAN Small nuclear ribonucleoprotein G - Homo sapiens (Human)| Length = 76 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/63 (38%), Positives = 39/63 (61%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ +D+ +S+ N GR++ G LRGFD N+++DE E S QQ +G+ +IRG Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQNNIGMVVIRG 64 Query: 338 DNI 346 ++I Sbjct: 65 NSI 67
>Q3ZBL0:RUXG_BOVIN Small nuclear ribonucleoprotein G - Bos taurus (Bovine)| Length = 76 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/63 (38%), Positives = 39/63 (61%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ +D+ +S+ N GR++ G LRGFD N+++DE E S QQ +G+ +IRG Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQNNIGMVVIRG 64 Query: 338 DNI 346 ++I Sbjct: 65 NSI 67
>P40018:RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B -| Saccharomyces cerevisiae (Baker's yeast) Length = 196 Score = 43.9 bits (102), Expect = 7e-04 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 18/81 (22%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDES-HERVYST-----------KEG- 298 L +L+D + V+T DGR +G L FD+ N++L+E ERV T K+G Sbjct: 12 LANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSKDGT 71 Query: 299 -----VQQLVLGLYIIRGDNI 346 V++ VLGL I+RG+ I Sbjct: 72 TLNIKVEKRVLGLTILRGEQI 92
>Q10163:YAU8_SCHPO Uncharacterized protein C26A3.08 - Schizosaccharomyces pombe| (Fission yeast) Length = 147 Score = 43.5 bits (101), Expect = 9e-04 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Frame = +2 Query: 146 GMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGV-------Q 304 G + SL++ ++V T DGR VG L FD N++L + E + K+ V + Sbjct: 2 GTTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEE 61 Query: 305 QLVLGLYIIRGDNI 346 + +LGL I+RG+ I Sbjct: 62 KRMLGLVILRGEFI 75
>P47093:LSM8_YEAST U6 snRNA-associated Sm-like protein LSm8 - Saccharomyces cerevisiae| (Baker's yeast) Length = 109 Score = 43.1 bits (100), Expect = 0.001 Identities = 22/79 (27%), Positives = 43/79 (54%) Frame = +2 Query: 152 ATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 331 ATL+ +++ + +I DG ++ +L GFD+ TN+ + R+ ++ + ++ Sbjct: 3 ATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI------SKEFICKAQLL 56 Query: 332 RGDNIGVVGEVDEELDAAL 388 RG I +VG +D E D +L Sbjct: 57 RGSEIALVGLIDAENDDSL 75
>O82221:RUXG_ARATH Probable small nuclear ribonucleoprotein G - Arabidopsis thaliana| (Mouse-ear cress) Length = 80 Score = 42.4 bits (98), Expect = 0.002 Identities = 22/66 (33%), Positives = 38/66 (57%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ +D+ + + N R + GTLRGFDQ N+++D + E G + +G+ +IRG Sbjct: 10 LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 64 Query: 338 DNIGVV 355 ++I V Sbjct: 65 NSIVTV 70
>P24715:RUXG_MEDSA Probable small nuclear ribonucleoprotein G - Medicago sativa| (Alfalfa) Length = 81 Score = 41.6 bits (96), Expect = 0.003 Identities = 22/66 (33%), Positives = 39/66 (59%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ +D+ + + R IVGTLRGFDQ N+++D + E G ++ +G+ +IRG Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE-----VNGNEKNDIGMVVIRG 64 Query: 338 DNIGVV 355 +++ V Sbjct: 65 NSVVTV 70
>Q9VXE0:RUXG_DROME Probable small nuclear ribonucleoprotein G - Drosophila| melanogaster (Fruit fly) Length = 76 Score = 41.2 bits (95), Expect = 0.004 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVY-STKEGVQQLVLGLYIIR 334 ++ +D+ + + N GR + G LRGFD N++LD++ E +TK + G+ +IR Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNI-----GMVVIR 63 Query: 335 GDNIGVVGEVD 367 G++I +V +D Sbjct: 64 GNSIVMVEALD 74
>O74966:RUXG_SCHPO Probable small nuclear ribonucleoprotein G - Schizosaccharomyces| pombe (Fission yeast) Length = 77 Score = 40.4 bits (93), Expect = 0.007 Identities = 22/78 (28%), Positives = 44/78 (56%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 ++ G L+ +D+ + V N R + G LRG+D NI+L++S E K +++ + Sbjct: 2 SKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEE----KVDGEKVKI 57 Query: 317 GLYIIRGDNIGVVGEVDE 370 G IRG+++ ++ +D+ Sbjct: 58 GSVAIRGNSVIMIETLDK 75
>P91918:RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B -| Caenorhabditis elegans Length = 160 Score = 40.0 bits (92), Expect = 0.009 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Frame = +2 Query: 182 ISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYIIRGDN 343 + +I DGR +G + FD+ NI+L E E + +G ++ +LGL ++RG++ Sbjct: 17 MKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEH 76 Query: 344 I 346 I Sbjct: 77 I 77
>Q9CQQ8:LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 - Mus musculus (Mouse)| Length = 103 Score = 39.7 bits (91), Expect = 0.012 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Frame = +2 Query: 119 SERDQTAQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERV------ 280 +++++ + + L +D+ I V GR G L+GFD N++LD + E + Sbjct: 2 ADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQ 61 Query: 281 YSTKEGVQQLVLGLYIIRGDNIGVV 355 Y E +Q LGL + RG ++ ++ Sbjct: 62 YKLTEDTRQ--LGLVVCRGTSVVLI 84
>Q9UK45:LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 - Homo sapiens (Human)| Length = 103 Score = 39.3 bits (90), Expect = 0.016 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Frame = +2 Query: 119 SERDQTAQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERV------ 280 +++++ + + L +D+ I V GR G L+GFD N++LD + E + Sbjct: 2 ADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQ 61 Query: 281 YSTKEGVQQLVLGLYIIRGDNIGVV 355 Y E +Q LGL + RG ++ ++ Sbjct: 62 YKLTEDTRQ--LGLVVCRGTSVVLI 84
>P57743:LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 - Saccharomyces cerevisiae| (Baker's yeast) Length = 89 Score = 39.3 bits (90), Expect = 0.016 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKE---GVQQLVLGLYIIRGD 340 +D+ + + R +VGTL+ FD NI+L ++ E +Y + + IRGD Sbjct: 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGD 71 Query: 341 NIGVVGEVDEELDAALDM 394 + ++ E+ D A+++ Sbjct: 72 TVTLISTPSEDDDGAVEI 89
>Q9N4G9:RUXG_CAEEL Probable small nuclear ribonucleoprotein G - Caenorhabditis elegans| Length = 77 Score = 38.5 bits (88), Expect = 0.028 Identities = 21/66 (31%), Positives = 39/66 (59%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ +D+ + + N R + G LRGFD N+++DE+ E Y G + LG+ +IRG Sbjct: 9 LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVIRG 64 Query: 338 DNIGVV 355 +++ ++ Sbjct: 65 NSVVIM 70
>P63164:RSMN_RAT Small nuclear ribonucleoprotein-associated protein N - Rattus| norvegicus (Rat) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q5R6I0:RSMN_PONPY Small nuclear ribonucleoprotein-associated protein N - Pongo| pygmaeus (Orangutan) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>P63163:RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N - Mus musculus| (Mouse) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q60HD3:RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N - Macaca| fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>P63162:RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N - Homo sapiens| (Human) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q17QN3:RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N - Bos taurus| (Bovine) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>P27048:RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B - Mus musculus| (Mouse) Length = 231 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q9N1Q0:RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' - Macropus| eugenii (Tammar wallaby) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>P14678:RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B' - Homo| sapiens (Human) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q9TU67:RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' - Erinaceus| europaeus (Western European hedgehog) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q05856:RSMB_DROME Small nuclear ribonucleoprotein-associated protein B - Drosophila| melanogaster (Fruit fly) Length = 199 Score = 38.1 bits (87), Expect = 0.036 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Frame = +2 Query: 182 ISVITNDGRNIVGTLRGFDQATNIILDESHE----RVYSTK--EGVQQLVLGLYIIRGDN 343 + ++ D R +GT + FD+ N+IL + E R ++K E ++ VLG ++RG+N Sbjct: 17 VRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGEN 76 Query: 344 I 346 I Sbjct: 77 I 77
>Q9PV94:RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' - Gallus| gallus (Chicken) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q58DW4:RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' - Bos taurus| (Bovine) Length = 240 Score = 38.1 bits (87), Expect = 0.036 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q9TU66:RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B' - Monodelphis| domestica (Short-tailed gray opossum) Length = 240 Score = 37.4 bits (85), Expect = 0.061 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYII 331 +D + I DGR +GT + FD+ N+IL + E + E ++ VLGL ++ Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 Query: 332 RGDNI 346 RG+N+ Sbjct: 73 RGENL 77
>Q12330:RUXE_YEAST Small nuclear ribonucleoprotein E - Saccharomyces cerevisiae| (Baker's yeast) Length = 94 Score = 36.2 bits (82), Expect = 0.14 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Frame = +2 Query: 203 GRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQL----VLGLYIIRGDNIGVVGEVD 367 G I G + GFD+ N+++DE+ E ++ +G + + LG +++GDNI ++ D Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>Q9VLV5:RUXE_DROME Probable small nuclear ribonucleoprotein E - Drosophila| melanogaster (Fruit fly) Length = 94 Score = 35.8 bits (81), Expect = 0.18 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +2 Query: 197 NDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEVDEEL 376 N I G + GFD+ N++LD++ E T+ Q+ LG +++GDNI ++ V Sbjct: 37 NISLRIEGHIVGFDEYMNLVLDDAEEVYVKTR---QRRNLGRIMLKGDNITLIQNVSPTK 93 Query: 377 D 379 D Sbjct: 94 D 94
>P57670:RUXX_THEAC Putative snRNP Sm-like protein - Thermoplasma acidophilum| Length = 83 Score = 35.4 bits (80), Expect = 0.23 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +2 Query: 149 MATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYI 328 M L+S + + + + R G L G+D NI+L + E + +GV VL Sbjct: 11 MDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVL---- 66 Query: 329 IRGDNI 346 +RGDN+ Sbjct: 67 VRGDNV 72
>Q8PZZ9:RUXX_METMA Putative snRNP Sm-like protein - Methanosarcina mazei| (Methanosarcina frisia) Length = 72 Score = 35.4 bits (80), Expect = 0.23 Identities = 21/70 (30%), Positives = 33/70 (47%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 A R + L + +D + V R G L+G+D N++LD + E +EG Sbjct: 2 ANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE----LREGEVVSKF 57 Query: 317 GLYIIRGDNI 346 +IRGDN+ Sbjct: 58 SSVVIRGDNV 67
>P40204:RUXG_YEAST Small nuclear ribonucleoprotein G - Saccharomyces cerevisiae| (Baker's yeast) Length = 77 Score = 35.0 bits (79), Expect = 0.30 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLY-IIR 334 L+ +D+ I + N R + G LRG+D N++LD++ E + ++ LGL +IR Sbjct: 7 LKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLGLQTVIR 64 Query: 335 GDNI 346 G++I Sbjct: 65 GNSI 68
>O26745:RUXX_METTH Putative snRNP Sm-like protein - Methanobacterium| thermoautotrophicum Length = 81 Score = 34.7 bits (78), Expect = 0.40 Identities = 21/79 (26%), Positives = 39/79 (49%) Frame = +2 Query: 110 LNPSERDQTAQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYST 289 ++ S + QR + L + ++ + + R G L+ FD N++L+++ E Sbjct: 2 IDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE----L 57 Query: 290 KEGVQQLVLGLYIIRGDNI 346 ++G LG +IRGDNI Sbjct: 58 EDGEVTRRLGTVLIRGDNI 76
>P53905:LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 - Saccharomyces cerevisiae| (Baker's yeast) Length = 115 Score = 34.7 bits (78), Expect = 0.40 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Frame = +2 Query: 173 DQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYS-TKEGVQQLV------LGLYII 331 D I V G+ ++G L+G+DQ N++LD++ E + + E +L+ LGL +I Sbjct: 35 DSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVI 94 Query: 332 RG 337 RG Sbjct: 95 RG 96
>P40089:LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 - Saccharomyces cerevisiae| (Baker's yeast) Length = 93 Score = 34.7 bits (78), Expect = 0.40 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = +2 Query: 149 MATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTK-EGVQQLVL--- 316 + ++ ++Q + ++ R GTL GFD N+IL+++ E + + E + V+ Sbjct: 9 LEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHH 68 Query: 317 GLYIIRGDNIGVV 355 G ++ G+NI ++ Sbjct: 69 GRMLLSGNNIAIL 81
>Q8TL47:RUXX_METAC Putative snRNP Sm-like protein - Methanosarcina acetivorans| Length = 72 Score = 34.3 bits (77), Expect = 0.52 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 A R + L + +D + V R G L+G+D N++LD + E ++G Sbjct: 2 ANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE----LRDGEVVSKF 57 Query: 317 GLYIIRGDNI 346 +IRGDN+ Sbjct: 58 SSVVIRGDNV 67
>P62305:RUXE_MOUSE Small nuclear ribonucleoprotein E - Mus musculus (Mouse)| Length = 92 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/51 (37%), Positives = 30/51 (58%) Frame = +2 Query: 212 IVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEV 364 I G + GFD+ N++LD++ E TK Q LG +++GDNI ++ V Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ---LGRIMLKGDNITLLQSV 90
>P62304:RUXE_HUMAN Small nuclear ribonucleoprotein E - Homo sapiens (Human)| Length = 92 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/51 (37%), Positives = 30/51 (58%) Frame = +2 Query: 212 IVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEV 364 I G + GFD+ N++LD++ E TK Q LG +++GDNI ++ V Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ---LGRIMLKGDNITLLQSV 90
>P62303:RUXE_CHICK Small nuclear ribonucleoprotein E - Gallus gallus (Chicken)| Length = 92 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/51 (37%), Positives = 30/51 (58%) Frame = +2 Query: 212 IVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEV 364 I G + GFD+ N++LD++ E TK Q LG +++GDNI ++ V Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ---LGRIMLKGDNITLLQSV 90
>Q5R628:LSM5_PONPY U6 snRNA-associated Sm-like protein LSm5 - Pongo pygmaeus| (Orangutan) Length = 91 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 ++ + I ++ + IVGTL GFD N++L++ E T EG + L ++ G Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE-FEITPEGRRITKLDQILLNG 76 Query: 338 DNI 346 +NI Sbjct: 77 NNI 79
>P62322:LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 - Mus musculus (Mouse)| Length = 91 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 ++ + I ++ + IVGTL GFD N++L++ E T EG + L ++ G Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE-FEITPEGRRITKLDQILLNG 76 Query: 338 DNI 346 +NI Sbjct: 77 NNI 79
>Q9Y4Y9:LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 - Homo sapiens (Human)| Length = 91 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 ++ + I ++ + IVGTL GFD N++L++ E T EG + L ++ G Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE-FEITPEGRRITKLDQILLNG 76 Query: 338 DNI 346 +NI Sbjct: 77 NNI 79
>Q2HJH0:LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 - Bos taurus (Bovine)| Length = 91 Score = 34.3 bits (77), Expect = 0.52 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 ++ + I ++ + IVGTL GFD N++L++ E T EG + L ++ G Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE-FEITPEGRRITKLDQILLNG 76 Query: 338 DNI 346 +NI Sbjct: 77 NNI 79
>Q9YEQ5:RUXX_AERPE Putative snRNP Sm-like protein - Aeropyrum pernix| Length = 77 Score = 33.9 bits (76), Expect = 0.68 Identities = 21/62 (33%), Positives = 35/62 (56%) Frame = +2 Query: 170 VDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIG 349 VD + V G I G L+ +DQ NIIL ++ E + +++ LGL ++RGD++ Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE---IGETSIRR--LGLTLVRGDSVV 71 Query: 350 VV 355 V+ Sbjct: 72 VI 73
>Q8SQH7:LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein - Encephalitozoon| cuniculi Length = 70 Score = 33.9 bits (76), Expect = 0.68 Identities = 23/67 (34%), Positives = 34/67 (50%) Frame = +2 Query: 158 LESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 337 L+ + + + V T G GTL GFD+ N++L S+ EG + VL +RG Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML------TCSSVEGSEDKVL---FLRG 58 Query: 338 DNIGVVG 358 +NI VG Sbjct: 59 ENILFVG 65
>O74016:RUXX_PYRHO Putative snRNP Sm-like protein - Pyrococcus horikoshii| Length = 75 Score = 33.5 bits (75), Expect = 0.88 Identities = 20/78 (25%), Positives = 37/78 (47%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 A+R + + +D+ + VI G G L G+D N++L ++ ++G Sbjct: 2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAE----MVQDGEVVKKY 57 Query: 317 GLYIIRGDNIGVVGEVDE 370 G +IRGDN+ + +E Sbjct: 58 GKIVIRGDNVLAISPTEE 75
>P17136:RSMB_RAT Small nuclear ribonucleoprotein-associated protein B - Rattus| norvegicus (Rat) Length = 214 Score = 33.5 bits (75), Expect = 0.88 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%) Frame = +2 Query: 200 DGRNIVGTLRGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYIIRGDNI 346 +GR +GT + FD+ N+IL + E + E ++ VLGL ++RG+N+ Sbjct: 6 NGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 60
>Q7ZUG0:RUXE_DANRE Small nuclear ribonucleoprotein E - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 92 Score = 33.1 bits (74), Expect = 1.2 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = +2 Query: 212 IVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEV 364 I G + GFD+ N++LD++ E TK + LG +++GDNI ++ V Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEVHMKTK---NRKPLGRIMLKGDNITLLQSV 90
>Q97BU5:RUXX_THEVO Putative snRNP Sm-like protein - Thermoplasma volcanium| Length = 83 Score = 32.7 bits (73), Expect = 1.5 Identities = 17/66 (25%), Positives = 32/66 (48%) Frame = +2 Query: 149 MATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYI 328 M L++ + + + + R G L G+D N++L + E + +GV +L Sbjct: 11 MDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRIL---- 66 Query: 329 IRGDNI 346 +RGDN+ Sbjct: 67 VRGDNV 72
>Q5JIE0:RUXX_PYRKO Putative snRNP Sm-like protein - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 76 Score = 32.7 bits (73), Expect = 1.5 Identities = 20/79 (25%), Positives = 38/79 (48%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 A+R + + +D+ + V+ G G L G+D N++L ++ ++G Sbjct: 2 AERPLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAE----LIQDGEVVKKY 57 Query: 317 GLYIIRGDNIGVVGEVDEE 373 G +IRGDN+ + V+ E Sbjct: 58 GKIVIRGDNVLALSPVELE 76
>Q9V0Y8:RUXX_PYRAB Putative snRNP Sm-like protein - Pyrococcus abyssi| Length = 75 Score = 32.7 bits (73), Expect = 1.5 Identities = 20/78 (25%), Positives = 37/78 (47%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 A+R + + +D+ + VI G G L G+D N++L ++ ++G Sbjct: 2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAE----MIQDGEVVKRY 57 Query: 317 GLYIIRGDNIGVVGEVDE 370 G +IRGDN+ + +E Sbjct: 58 GKIVIRGDNVLAISPTEE 75
>Q8U0P4:RUXX_PYRFU Putative snRNP Sm-like protein - Pyrococcus furiosus| Length = 76 Score = 32.3 bits (72), Expect = 2.0 Identities = 20/78 (25%), Positives = 36/78 (46%) Frame = +2 Query: 137 AQRGMATLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL 316 A+R + + +D+ + VI G G L G+D N++L + ++G Sbjct: 2 AERPLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAE----LLQDGEVVKKY 57 Query: 317 GLYIIRGDNIGVVGEVDE 370 G +IRGDN+ + +E Sbjct: 58 GKIVIRGDNVLAISPTEE 75
>O88871:GABR2_RAT Gamma-aminobutyric acid type B receptor, subunit 2 precursor -| Rattus norvegicus (Rat) Length = 940 Score = 32.3 bits (72), Expect = 2.0 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -3 Query: 529 DQSINLQYRLTEQNQLWLAQSGSDR*KIPSSSVNDRLEGLRSELRHVQRRVKLLVHLTHH 350 DQ+ LQ+ TE PS + D +E + S H+QRR+ L + + HH Sbjct: 858 DQNPQLQWNTTE----------------PSRTCKDPIEDINSP-EHIQRRLSLQLPILHH 900 Query: 349 AYV 341 AY+ Sbjct: 901 AYL 903
>O75899:GABR2_HUMAN Gamma-aminobutyric acid type B receptor, subunit 2 precursor - Homo| sapiens (Human) Length = 941 Score = 32.3 bits (72), Expect = 2.0 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -3 Query: 529 DQSINLQYRLTEQNQLWLAQSGSDR*KIPSSSVNDRLEGLRSELRHVQRRVKLLVHLTHH 350 DQ+ LQ+ TE PS + D +E + S H+QRR+ L + + HH Sbjct: 859 DQNPQLQWNTTE----------------PSRTCKDPIEDINSP-EHIQRRLSLQLPILHH 901 Query: 349 AYV 341 AY+ Sbjct: 902 AYL 904
>Q9XTU6:RUXE_CAEEL Probable small nuclear ribonucleoprotein E - Caenorhabditis elegans| Length = 90 Score = 32.0 bits (71), Expect = 2.6 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +2 Query: 218 GTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIGVVGEVDEE 373 G + GFD+ N++ DE+ E TK + +G +++GDNI ++ +E Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTK---GRNKIGRILLKGDNITLIHAAQQE 89
>Q04526:YMI3_YEAST Putative uncharacterized protein YML083C - Saccharomyces cerevisiae| (Baker's yeast) Length = 418 Score = 31.2 bits (69), Expect = 4.4 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -1 Query: 318 PRTSCCTPSLVE*TLSWDSSRMMLVAWSNPRRVPTMLRPSL-VMTEITWSTRDSSVAI 148 P C +P L L+ D + +S+PR +PT + PS+ T + WS + ++ + Sbjct: 19 PGRQCLSPVLPPIILALDQQHSLTFGYSSPRCLPTPILPSMSTNTPVHWSQQVVTIPV 76
>Q80ZG6:BBC3_RAT Bcl-2-binding component 3 - Rattus norvegicus (Rat)| Length = 193 Score = 31.2 bits (69), Expect = 4.4 Identities = 18/50 (36%), Positives = 20/50 (40%) Frame = +1 Query: 166 PRRPGDLRHHQRRPQHRGNSAGVRPGHQHHPRRVPREGLLHQGGSTTACP 315 PR PG R R P+ G + P QH VP GG T A P Sbjct: 75 PRWPGGHRSRPRGPRPDGPQPSLSPAQQHLESPVPSAPEALAGGPTQAAP 124
>Q99ML1:BBC3_MOUSE Bcl-2-binding component 3 - Mus musculus (Mouse)| Length = 193 Score = 31.2 bits (69), Expect = 4.4 Identities = 18/50 (36%), Positives = 20/50 (40%) Frame = +1 Query: 166 PRRPGDLRHHQRRPQHRGNSAGVRPGHQHHPRRVPREGLLHQGGSTTACP 315 PR PG R R P+ G + P QH VP GG T A P Sbjct: 75 PRWPGGHRSRPRGPRPDGPQPSLSPAQQHLESPVPSAPEALAGGPTQAAP 124
>Q63003:5E5_RAT 5E5 antigen - Rattus norvegicus (Rat)| Length = 825 Score = 30.4 bits (67), Expect = 7.5 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%) Frame = +1 Query: 124 ERSDSTKGDGDARVPRRPGDLRHHQRRPQH-RGNSAGVR------PGHQHHPRR 264 E D G R+P RPGD RP H RG + HHPRR Sbjct: 649 EAQDGLLPRGRDRLPLRPGDSNQRVERPGHPRGGHGAINAPSAPDASPPHHPRR 702
>Q13461:FOXE3_HUMAN Forkhead box protein E3 - Homo sapiens (Human)| Length = 319 Score = 30.0 bits (66), Expect = 9.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 91 PIPILSSQP*RERSDSTKGDGDARVPRRPGDLRHHQRRPQHRG 219 P P+ ++P RE ++ G G+A PG R +RRP RG Sbjct: 29 PSPLAGAEPGREPEEAAAGRGEAAPTPAPGPGR-RRRRPLQRG 70
>P70478:APC_RAT Adenomatous polyposis coli protein - Rattus norvegicus (Rat)| Length = 2842 Score = 30.0 bits (66), Expect = 9.9 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 11/82 (13%) Frame = +1 Query: 100 ILSSQP*RERSDSTKGDGDARVPRRPG-----DLRHHQRRPQHRGNSAGVRPGHQHHPRR 264 I S+ P + R KG+G+ + PR+ G DL + Q + G+ P ++ + Sbjct: 2042 ISSAMPKKRRPSRLKGEGEWQSPRKVGSVLAEDLTLDLKDIQRPESEHGLSPDSENFDWK 2101 Query: 265 VPREGL------LHQGGSTTAC 312 +EG LHQ + AC Sbjct: 2102 AIQEGANSIVSSLHQAAAAAAC 2123 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 106,134,116 Number of extensions: 2066622 Number of successful extensions: 6010 Number of sequences better than 10.0: 73 Number of HSP's gapped: 5971 Number of HSP's successfully gapped: 73 Length of query: 248 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 138 Effective length of database: 70,513,989 Effective search space: 9730930482 Effective search space used: 9730930482 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
