| Clone Name | FLbaf40n13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056825.1| Oryza sativa (japonica cultivar-group) Os03g0395000 (Os03g0395000) mRNA, complete cds Length = 1573 Score = 440 bits (222), Expect = e-120 Identities = 438/510 (85%) Strand = Plus / Plus Query: 434 ggagtggatgcccagcatggaagggttcgtgaggtaccttgtggatagcaagcttgtctt 493 |||||||||||| |||||||| |||||||| | |||||| ||||| |||||||| ||||| Sbjct: 507 ggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtctt 566 Query: 494 cgacaccgtcgagcggatcatcgccgggtctacggacgtcgcctatgtttacttcaggag 553 ||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||| Sbjct: 567 cgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcctatgtttacttcaggaa 626 Query: 554 aagtggtatggaacgtgcggctagcattgaaaaagatttggagtggttcagagaacaagc 613 ||||||| ||||||| | ||||| ||| |||||||||||||||||| ||| |||| Sbjct: 627 aagtggtctggaacgctcagctagaattacaaaagatttggagtggtttggagggcaagg 686 Query: 614 aattgaaattccagagccaagtacttttggatcaacatatgcagcttatctgtctgaatt 673 ||||| | | ||||||||||||||| |||||||||||||||| |||||||| ||||| | Sbjct: 687 aattgcagtaccagagccaagtactgctggatcaacatatgcaacttatctgactgaact 746 Query: 674 ggctgggaggagtgccccggccttcctttcccactattacaatatttatttttcccatac 733 |||| ||| | |||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct: 747 tgctgagagcaatgccccagccttcctttcccactattacaatatttattttgcacatac 806 Query: 734 aacaggagggttggcgattggtaaaaagacatgcgacaaaattttggaaggaagactgct 793 ||| |||||| |||| || ||||| |||| || | | ||||||||||||||||| ||| Sbjct: 807 aactggaggggtggctataggtaacaagatatccaagaaaattttggaaggaagggagct 866 Query: 794 ggagttctacaaatgggattctgacccagagattttactaaaggatgctagggagaagct 853 ||||| ||||||||||||||||| ||| |||| ||||| ||| | ||||||||||| Sbjct: 867 agagttttacaaatgggattctgatgtagaacttttgctaaaagataccagggagaagct 926 Query: 854 taatgagcttagcaagcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgc 913 ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 927 taacgaacttagcaagcattggtctcggaaggacaggaacttgtgcttgaaagaagctgc 986 Query: 914 aaaatgctttcagtacatggggcggattgt 943 |||||| || ||| | ||||||||||||| Sbjct: 987 aaaatgtttccagcatttggggcggattgt 1016 Score = 121 bits (61), Expect = 7e-24 Identities = 73/77 (94%) Strand = Plus / Plus Query: 201 cggcggtacccgaggcagtacccaggcgaggcggtgggcgttgccgaggagatacggttc 260 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 271 cggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttc 330 Query: 261 gttgccatgcgcctccg 277 || |||||||||||||| Sbjct: 331 gtcgccatgcgcctccg 347
>dbj|AK073283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029D12, full insert sequence Length = 1574 Score = 440 bits (222), Expect = e-120 Identities = 438/510 (85%) Strand = Plus / Plus Query: 434 ggagtggatgcccagcatggaagggttcgtgaggtaccttgtggatagcaagcttgtctt 493 |||||||||||| |||||||| |||||||| | |||||| ||||| |||||||| ||||| Sbjct: 508 ggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtctt 567 Query: 494 cgacaccgtcgagcggatcatcgccgggtctacggacgtcgcctatgtttacttcaggag 553 ||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||| Sbjct: 568 cgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcctatgtttacttcaggaa 627 Query: 554 aagtggtatggaacgtgcggctagcattgaaaaagatttggagtggttcagagaacaagc 613 ||||||| ||||||| | ||||| ||| |||||||||||||||||| ||| |||| Sbjct: 628 aagtggtctggaacgctcagctagaattacaaaagatttggagtggtttggagggcaagg 687 Query: 614 aattgaaattccagagccaagtacttttggatcaacatatgcagcttatctgtctgaatt 673 ||||| | | ||||||||||||||| |||||||||||||||| |||||||| ||||| | Sbjct: 688 aattgcagtaccagagccaagtactgctggatcaacatatgcaacttatctgactgaact 747 Query: 674 ggctgggaggagtgccccggccttcctttcccactattacaatatttatttttcccatac 733 |||| ||| | |||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct: 748 tgctgagagcaatgccccagccttcctttcccactattacaatatttattttgcacatac 807 Query: 734 aacaggagggttggcgattggtaaaaagacatgcgacaaaattttggaaggaagactgct 793 ||| |||||| |||| || ||||| |||| || | | ||||||||||||||||| ||| Sbjct: 808 aactggaggggtggctataggtaacaagatatccaagaaaattttggaaggaagggagct 867 Query: 794 ggagttctacaaatgggattctgacccagagattttactaaaggatgctagggagaagct 853 ||||| ||||||||||||||||| ||| |||| ||||| ||| | ||||||||||| Sbjct: 868 agagttttacaaatgggattctgatgtagaacttttgctaaaagataccagggagaagct 927 Query: 854 taatgagcttagcaagcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgc 913 ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 928 taacgaacttagcaagcattggtctcggaaggacaggaacttgtgcttgaaagaagctgc 987 Query: 914 aaaatgctttcagtacatggggcggattgt 943 |||||| || ||| | ||||||||||||| Sbjct: 988 aaaatgtttccagcatttggggcggattgt 1017 Score = 121 bits (61), Expect = 7e-24 Identities = 73/77 (94%) Strand = Plus / Plus Query: 201 cggcggtacccgaggcagtacccaggcgaggcggtgggcgttgccgaggagatacggttc 260 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 272 cggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttc 331 Query: 261 gttgccatgcgcctccg 277 || |||||||||||||| Sbjct: 332 gtcgccatgcgcctccg 348
>gb|AF320027.1|AF320027 Sorghum bicolor heme oxygenase 2 (HO2) mRNA, partial cds; nuclear gene for chloroplast product Length = 1444 Score = 359 bits (181), Expect = 2e-95 Identities = 421/501 (84%) Strand = Plus / Plus Query: 434 ggagtggatgcccagcatggaagggttcgtgaggtaccttgtggatagcaagcttgtctt 493 ||||||||||||||||||||| |||||||| | ||||| ||||| |||||||| ||||| Sbjct: 459 ggagtggatgcccagcatggaggggttcgtccgctacctggtggacagcaagctcgtctt 518 Query: 494 cgacaccgtcgagcggatcatcgccgggtctacggacgtcgcctatgtttacttcaggag 553 || ||| | |||||| || |||||| ||| || ||||||||||||||||||||||||| Sbjct: 519 cggaaccattgagcgggtcgtcgccgagtccaccgacgtcgcctatgtttacttcaggaa 578 Query: 554 aagtggtatggaacgtgcggctagcattgaaaaagatttggagtggttcagagaacaagc 613 ||||||| |||| ||| | ||||||||| |||||||||||||||||||||| |||||| Sbjct: 579 aagtggtttggagcgttcagctagcatttcaaaagatttggagtggttcagaaaacaagg 638 Query: 614 aattgaaattccagagccaagtacttttggatcaacatatgcagcttatctgtctgaatt 673 || | ||| |||||||||||||||| |||||||| ||||||||||||||| ||||| | Sbjct: 639 gatcgcaatcccagagccaagtacttcaggatcaacttatgcagcttatctgactgaact 698 Query: 674 ggctgggaggagtgccccggccttcctttcccactattacaatatttatttttcccatac 733 ||||| || | || || || ||||| ||||| ||||||||||| |||||| | |||| Sbjct: 699 ggctgaaagcaacgctcctgcattcctctcccattattacaatatctattttgcacatat 758 Query: 734 aacaggagggttggcgattggtaaaaagacatgcgacaaaattttggaaggaagactgct 793 ||| ||||| |||| || || || |||| ||| | |||||| |||||||||| ||| Sbjct: 759 aactggaggtgtggcaataggcaataagatctgcaagaaaattctggaaggaagggagct 818 Query: 794 ggagttctacaaatgggattctgacccagagattttactaaaggatgctagggagaagct 853 |||||||||||| |||||| |||| | || || || |||| ||||| ||||||||||| Sbjct: 819 ggagttctacaagtgggatactgatgctgaacttctattaaaagatgccagggagaagct 878 Query: 854 taatgagcttagcaagcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgc 913 |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 879 gaatgagctcagcaagcactggactcggaaggacaggaacttgtgcttgaaagaagctgc 938 Query: 914 aaaatgctttcagtacatggg 934 ||||||||| |||||| |||| Sbjct: 939 aaaatgcttccagtacttggg 959 Score = 101 bits (51), Expect = 7e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 201 cggcggtacccgaggcagtacccaggcgaggcggtgggcgttgccgaggagatacggttc 260 ||||||||||||| ||||||||| |||||| |||||||||| ||||||||||| || ||| Sbjct: 211 cggcggtacccgaagcagtaccccggcgagtcggtgggcgtcgccgaggagatgcgcttc 270 Query: 261 gttgccatgcgcctccgcaacactaagcgca 291 || ||||||||||| |||||| | ||||||| Sbjct: 271 gtcgccatgcgcctgcgcaaccccaagcgca 301
>dbj|AK061587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F06, full insert sequence Length = 882 Score = 285 bits (144), Expect = 2e-73 Identities = 276/320 (86%) Strand = Plus / Plus Query: 624 ccagagccaagtacttttggatcaacatatgcagcttatctgtctgaattggctgggagg 683 ||||||||||||||| |||||||||||||||| |||||||| ||||| | |||| ||| Sbjct: 10 ccagagccaagtactgctggatcaacatatgcaacttatctgactgaacttgctgagagc 69 Query: 684 agtgccccggccttcctttcccactattacaatatttatttttcccatacaacaggaggg 743 | |||||| ||||||||||||||||||||||||||||||||| | |||||||| |||||| Sbjct: 70 aatgccccagccttcctttcccactattacaatatttattttgcacatacaactggaggg 129 Query: 744 ttggcgattggtaaaaagacatgcgacaaaattttggaaggaagactgctggagttctac 803 |||| || ||||| |||| || | | ||||||||||||||||| ||| ||||| ||| Sbjct: 130 gtggctataggtaacaagatatccaagaaaattttggaaggaagggagctagagttttac 189 Query: 804 aaatgggattctgacccagagattttactaaaggatgctagggagaagcttaatgagctt 863 |||||||||||||| ||| |||| ||||| ||| | |||||||||||||| || ||| Sbjct: 190 aaatgggattctgatgtagaacttttgctaaaagataccagggagaagcttaacgaactt 249 Query: 864 agcaagcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgcaaaatgcttt 923 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 250 agcaagcattggtctcggaaggacaggaacttgtgcttgaaagaagctgcaaaatgtttc 309 Query: 924 cagtacatggggcggattgt 943 ||| | ||||||||||||| Sbjct: 310 cagcatttggggcggattgt 329
>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0004M10, complete sequence Length = 152423 Score = 182 bits (92), Expect = 2e-42 Identities = 188/220 (85%) Strand = Plus / Minus Query: 538 atgtttacttcaggagaagtggtatggaacgtgcggctagcattgaaaaagatttggagt 597 ||||||||||||||| ||||||| ||||||| | ||||| ||| |||||||||||||| Sbjct: 25976 atgtttacttcaggaaaagtggtctggaacgctcagctagaattacaaaagatttggagt 25917 Query: 598 ggttcagagaacaagcaattgaaattccagagccaagtacttttggatcaacatatgcag 657 |||| ||| |||| ||||| | | ||||||||||||||| |||||||||||||||| Sbjct: 25916 ggtttggagggcaaggaattgcagtaccagagccaagtactgctggatcaacatatgcaa 25857 Query: 658 cttatctgtctgaattggctgggaggagtgccccggccttcctttcccactattacaata 717 |||||||| ||||| | |||| ||| | |||||| ||||||||||||||||||||||||| Sbjct: 25856 cttatctgactgaacttgctgagagcaatgccccagccttcctttcccactattacaata 25797 Query: 718 tttatttttcccatacaacaggagggttggcgattggtaa 757 |||||||| | |||||||| |||||| |||| || ||||| Sbjct: 25796 tttattttgcacatacaactggaggggtggctataggtaa 25757 Score = 121 bits (61), Expect = 7e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 201 cggcggtacccgaggcagtacccaggcgaggcggtgggcgttgccgaggagatacggttc 260 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 27148 cggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttc 27089 Query: 261 gttgccatgcgcctccg 277 || |||||||||||||| Sbjct: 27088 gtcgccatgcgcctccg 27072 Score = 111 bits (56), Expect = 7e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 434 ggagtggatgcccagcatggaagggttcgtgaggtaccttgtggatagcaagcttgtctt 493 |||||||||||| |||||||| |||||||| | |||||| ||||| |||||||| ||||| Sbjct: 26912 ggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtctt 26853 Query: 494 cgacaccgtcgagcggatcatcgccgggtctacggacgtcgcct 537 ||||||||||||||||||| | |||| ||| || |||||||||| Sbjct: 26852 cgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcct 26809 Score = 95.6 bits (48), Expect = 4e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 868 agcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgcaaaatgctttcagt 927 |||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 24691 agcattggtctcggaaggacaggaacttgtgcttgaaagaagctgcaaaatgtttccagc 24632 Query: 928 acatggggcggattgt 943 | ||||||||||||| Sbjct: 24631 atttggggcggattgt 24616 Score = 69.9 bits (35), Expect = 2e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 771 aaaattttggaaggaagactgctggagttctacaaatgggattctgacccagagatttta 830 ||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||| Sbjct: 24900 aaaattttggaaggaagggagctagagttttacaaatgggattctgatgtagaacttttg 24841 Query: 831 ctaaaggatgctagggagaagcttaatgagcttagcaag 869 ||||| ||| | |||||||||||||| || ||||||||| Sbjct: 24840 ctaaaagataccagggagaagcttaacgaacttagcaag 24802
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 182 bits (92), Expect = 2e-42 Identities = 188/220 (85%) Strand = Plus / Minus Query: 538 atgtttacttcaggagaagtggtatggaacgtgcggctagcattgaaaaagatttggagt 597 ||||||||||||||| ||||||| ||||||| | ||||| ||| |||||||||||||| Sbjct: 15758710 atgtttacttcaggaaaagtggtctggaacgctcagctagaattacaaaagatttggagt 15758651 Query: 598 ggttcagagaacaagcaattgaaattccagagccaagtacttttggatcaacatatgcag 657 |||| ||| |||| ||||| | | ||||||||||||||| |||||||||||||||| Sbjct: 15758650 ggtttggagggcaaggaattgcagtaccagagccaagtactgctggatcaacatatgcaa 15758591 Query: 658 cttatctgtctgaattggctgggaggagtgccccggccttcctttcccactattacaata 717 |||||||| ||||| | |||| ||| | |||||| ||||||||||||||||||||||||| Sbjct: 15758590 cttatctgactgaacttgctgagagcaatgccccagccttcctttcccactattacaata 15758531 Query: 718 tttatttttcccatacaacaggagggttggcgattggtaa 757 |||||||| | |||||||| |||||| |||| || ||||| Sbjct: 15758530 tttattttgcacatacaactggaggggtggctataggtaa 15758491 Score = 121 bits (61), Expect = 7e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 201 cggcggtacccgaggcagtacccaggcgaggcggtgggcgttgccgaggagatacggttc 260 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 15759882 cggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttc 15759823 Query: 261 gttgccatgcgcctccg 277 || |||||||||||||| Sbjct: 15759822 gtcgccatgcgcctccg 15759806 Score = 111 bits (56), Expect = 7e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 434 ggagtggatgcccagcatggaagggttcgtgaggtaccttgtggatagcaagcttgtctt 493 |||||||||||| |||||||| |||||||| | |||||| ||||| |||||||| ||||| Sbjct: 15759646 ggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtctt 15759587 Query: 494 cgacaccgtcgagcggatcatcgccgggtctacggacgtcgcct 537 ||||||||||||||||||| | |||| ||| || |||||||||| Sbjct: 15759586 cgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcct 15759543 Score = 95.6 bits (48), Expect = 4e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 868 agcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgcaaaatgctttcagt 927 |||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 15757425 agcattggtctcggaaggacaggaacttgtgcttgaaagaagctgcaaaatgtttccagc 15757366 Query: 928 acatggggcggattgt 943 | ||||||||||||| Sbjct: 15757365 atttggggcggattgt 15757350 Score = 69.9 bits (35), Expect = 2e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 771 aaaattttggaaggaagactgctggagttctacaaatgggattctgacccagagatttta 830 ||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||| Sbjct: 15757634 aaaattttggaaggaagggagctagagttttacaaatgggattctgatgtagaacttttg 15757575 Query: 831 ctaaaggatgctagggagaagcttaatgagcttagcaag 869 ||||| ||| | |||||||||||||| || ||||||||| Sbjct: 15757574 ctaaaagataccagggagaagcttaacgaacttagcaag 15757536
>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete sequence Length = 178748 Score = 182 bits (92), Expect = 2e-42 Identities = 188/220 (85%) Strand = Plus / Minus Query: 538 atgtttacttcaggagaagtggtatggaacgtgcggctagcattgaaaaagatttggagt 597 ||||||||||||||| ||||||| ||||||| | ||||| ||| |||||||||||||| Sbjct: 174130 atgtttacttcaggaaaagtggtctggaacgctcagctagaattacaaaagatttggagt 174071 Query: 598 ggttcagagaacaagcaattgaaattccagagccaagtacttttggatcaacatatgcag 657 |||| ||| |||| ||||| | | ||||||||||||||| |||||||||||||||| Sbjct: 174070 ggtttggagggcaaggaattgcagtaccagagccaagtactgctggatcaacatatgcaa 174011 Query: 658 cttatctgtctgaattggctgggaggagtgccccggccttcctttcccactattacaata 717 |||||||| ||||| | |||| ||| | |||||| ||||||||||||||||||||||||| Sbjct: 174010 cttatctgactgaacttgctgagagcaatgccccagccttcctttcccactattacaata 173951 Query: 718 tttatttttcccatacaacaggagggttggcgattggtaa 757 |||||||| | |||||||| |||||| |||| || ||||| Sbjct: 173950 tttattttgcacatacaactggaggggtggctataggtaa 173911 Score = 121 bits (61), Expect = 7e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 201 cggcggtacccgaggcagtacccaggcgaggcggtgggcgttgccgaggagatacggttc 260 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 175302 cggcggtacccgaggcagtaccccggcgaggcggtgggcgtcgccgaggagatgcggttc 175243 Query: 261 gttgccatgcgcctccg 277 || |||||||||||||| Sbjct: 175242 gtcgccatgcgcctccg 175226 Score = 111 bits (56), Expect = 7e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 434 ggagtggatgcccagcatggaagggttcgtgaggtaccttgtggatagcaagcttgtctt 493 |||||||||||| |||||||| |||||||| | |||||| ||||| |||||||| ||||| Sbjct: 175066 ggagtggatgccgagcatggaggggttcgtcaagtacctggtggacagcaagctcgtctt 175007 Query: 494 cgacaccgtcgagcggatcatcgccgggtctacggacgtcgcct 537 ||||||||||||||||||| | |||| ||| || |||||||||| Sbjct: 175006 cgacaccgtcgagcggatcgtagccgagtccaccgacgtcgcct 174963 Score = 95.6 bits (48), Expect = 4e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 868 agcactggtctcgaaaggacaggaacttgtgcttgaaagaagctgcaaaatgctttcagt 927 |||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 172845 agcattggtctcggaaggacaggaacttgtgcttgaaagaagctgcaaaatgtttccagc 172786 Query: 928 acatggggcggattgt 943 | ||||||||||||| Sbjct: 172785 atttggggcggattgt 172770 Score = 69.9 bits (35), Expect = 2e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 771 aaaattttggaaggaagactgctggagttctacaaatgggattctgacccagagatttta 830 ||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||| Sbjct: 173054 aaaattttggaaggaagggagctagagttttacaaatgggattctgatgtagaacttttg 172995 Query: 831 ctaaaggatgctagggagaagcttaatgagcttagcaag 869 ||||| ||| | |||||||||||||| || ||||||||| Sbjct: 172994 ctaaaagataccagggagaagcttaacgaacttagcaag 172956
>ref|XM_651748.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (7.t00051) partial mRNA Length = 981 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Minus Query: 694 ccttcctttcccactattacaat 716 ||||||||||||||||||||||| Sbjct: 828 ccttcctttcccactattacaat 806
>emb|CT828734.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103J02, full insert sequence Length = 1294 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 791 gctggagttctacaaatggga 811 ||||||||||||||||||||| Sbjct: 989 gctggagttctacaaatggga 1009
>ref|NM_001065570.1| Oryza sativa (japonica cultivar-group) Os07g0179400 (Os07g0179400) mRNA, complete cds Length = 1366 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 ctcggcggcggcgccgctccggcga 95 ||||||||||||| ||||||||||| Sbjct: 357 ctcggcggcggcggcgctccggcga 333
>ref|NM_001064546.1| Oryza sativa (japonica cultivar-group) Os06g0603000 (Os06g0603000) mRNA, complete cds Length = 1334 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 791 gctggagttctacaaatggga 811 ||||||||||||||||||||| Sbjct: 991 gctggagttctacaaatggga 1011
>ref|NM_001049012.1| Oryza sativa (japonica cultivar-group) Os01g0228400 (Os01g0228400) mRNA, complete cds Length = 2449 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 771 aaaattttggaaggaagactg 791 ||||||||||||||||||||| Sbjct: 2336 aaaattttggaaggaagactg 2356
>ref|XM_001212167.1| Aspergillus terreus NIH2624 hypothetical protein (ATEG_02989) mRNA, complete cds Length = 1716 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 ttctccagccatcaagaaagc 132 ||||||||||||||||||||| Sbjct: 6 ttctccagccatcaagaaagc 26
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 cgtcgagcggatcatcgccgg 520 ||||||||||||||||||||| Sbjct: 135581 cgtcgagcggatcatcgccgg 135601
>ref|NM_105640.2| Arabidopsis thaliana heme oxygenase (decyclizing) (AT1G69720) mRNA, complete cds Length = 2166 Score = 42.1 bits (21), Expect = 5.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 585 aaagatttggagtggttcagagaacaagcaattgaaattccagagccaa 633 ||||||||||||||||||| ||||||| ||| ||||||||||||| Sbjct: 577 aaagatttggagtggttcaaggaacaaggttatgagattccagagccaa 625
>gb|AC139746.15| Medicago truncatula clone mth2-17b20, complete sequence Length = 118157 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 614 aattgaaattccagagccaag 634 ||||||||||||||||||||| Sbjct: 95374 aattgaaattccagagccaag 95354
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 69 ccctcggcggcggcgccgctccggc 93 |||||||||||||| |||||||||| Sbjct: 51277 ccctcggcggcggcaccgctccggc 51301
>gb|AC157094.8| Mus musculus 6 BAC RP24-445L10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176428 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 aaagaagctgcaaaatgcttt 923 ||||||||||||||||||||| Sbjct: 107353 aaagaagctgcaaaatgcttt 107333
>gb|AY050906.1| Arabidopsis thaliana unknown protein (At1g65295) mRNA, partial cds Length = 918 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ggtggtgatagtgaagctgtt 24 ||||||||||||||||||||| Sbjct: 826 ggtggtgatagtgaagctgtt 846
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 ttatctgtctgaattggctgg 679 ||||||||||||||||||||| Sbjct: 2597270 ttatctgtctgaattggctgg 2597290
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 ctcggcggcggcgccgctccggcga 95 ||||||||||||| ||||||||||| Sbjct: 4219764 ctcggcggcggcggcgctccggcga 4219788
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 791 gctggagttctacaaatggga 811 ||||||||||||||||||||| Sbjct: 23470577 gctggagttctacaaatggga 23470557
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 771 aaaattttggaaggaagactg 791 ||||||||||||||||||||| Sbjct: 7094202 aaaattttggaaggaagactg 7094222
>gb|AY084250.1| Arabidopsis thaliana clone 101223 mRNA, complete sequence Length = 1115 Score = 42.1 bits (21), Expect = 5.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 585 aaagatttggagtggttcagagaacaagcaattgaaattccagagccaa 633 ||||||||||||||||||| ||||||| ||| ||||||||||||| Sbjct: 577 aaagatttggagtggttcaaggaacaaggttatgagattccagagccaa 625
>gb|AF320022.1|AF320022 Arabidopsis thaliana heme oxygenase 3 (HO3) gene, complete cds; nuclear gene for chloroplast product Length = 2173 Score = 42.1 bits (21), Expect = 5.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 585 aaagatttggagtggttcagagaacaagcaattgaaattccagagccaa 633 ||||||||||||||||||| ||||||| ||| ||||||||||||| Sbjct: 1357 aaagatttggagtggttcaaggaacaaggttatgagattccagagccaa 1405
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 771 aaaattttggaaggaagactg 791 ||||||||||||||||||||| Sbjct: 81782 aaaattttggaaggaagactg 81802
>gb|AC013289.11|AC013289 Arabidopsis thaliana chromosome 1 BAC T6C23 genomic sequence, complete sequence Length = 87148 Score = 42.1 bits (21), Expect = 5.3 Identities = 42/49 (85%) Strand = Plus / Minus Query: 585 aaagatttggagtggttcagagaacaagcaattgaaattccagagccaa 633 ||||||||||||||||||| ||||||| ||| ||||||||||||| Sbjct: 43015 aaagatttggagtggttcaaggaacaaggttatgagattccagagccaa 42967
>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence Length = 88292 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ggtggtgatagtgaagctgtt 24 ||||||||||||||||||||| Sbjct: 18705 ggtggtgatagtgaagctgtt 18725
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 791 gctggagttctacaaatggga 811 ||||||||||||||||||||| Sbjct: 130132 gctggagttctacaaatggga 130112
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 ctcggcggcggcgccgctccggcga 95 ||||||||||||| ||||||||||| Sbjct: 40818 ctcggcggcggcggcgctccggcga 40842
>dbj|AK105248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A12, full insert sequence Length = 2448 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 771 aaaattttggaaggaagactg 791 ||||||||||||||||||||| Sbjct: 2335 aaaattttggaaggaagactg 2355
>dbj|AK104955.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A03, full insert sequence Length = 1334 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 791 gctggagttctacaaatggga 811 ||||||||||||||||||||| Sbjct: 991 gctggagttctacaaatggga 1011
>dbj|AK073022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149P22, full insert sequence Length = 1367 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 ctcggcggcggcgccgctccggcga 95 ||||||||||||| ||||||||||| Sbjct: 358 ctcggcggcggcggcgctccggcga 334
>dbj|AK068856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O03, full insert sequence Length = 1331 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 791 gctggagttctacaaatggga 811 ||||||||||||||||||||| Sbjct: 999 gctggagttctacaaatggga 1019
>gb|AC153822.13| Mus musculus 10 BAC RP23-56N1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217746 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 aaagaagctgcaaaatgcttt 923 ||||||||||||||||||||| Sbjct: 25459 aaagaagctgcaaaatgcttt 25479
>emb|AL672038.7| Mouse DNA sequence from clone RP23-317H19 on chromosome X, complete sequence Length = 181127 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 774 attttggaaggaagactgctg 794 ||||||||||||||||||||| Sbjct: 127121 attttggaaggaagactgctg 127101 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 223,710,240 Number of extensions: 12571306 Number of successful extensions: 246708 Number of sequences better than 10.0: 36 Number of HSP's gapped: 246699 Number of HSP's successfully gapped: 51 Length of query: 1384 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1361 Effective length of database: 18,503,978,556 Effective search space: 25183914814716 Effective search space used: 25183914814716 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)