ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf47e21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596610.1| Saccharum officinarum clone SCCCLR1C03A03, complete sequence Length = 1424 Score = 543 bits (274), Expect = e-150 Identities = 550/646 (85%) Strand = Plus / Minus Query: 1428 tgcttcctgatttgaattcgaatcactttgcctccatggcttcaactcattcaagccatt 1487 ||||||||||| | |||| |||||| ||||| || | |||||||||||| |||||||||| Sbjct: 1189 tgcttcctgatcttaatttgaatcattttgcttctacggcttcaactcactcaagccatt 1130 Query: 1488 ctgttagtatcgagtcacttgaggattccattgctgatgcnnnnnnnnnnnngaacgatc 1547 |||||||||| ||||| ||||||||||| |||||||||| ||| |||| Sbjct: 1129 ctgttagtattgagtctcttgaggattctgttgctgatgccagaagcaataagaatgatc 1070 Query: 1548 tgttaccctcacttgagctggttactaagatgatagaggatgtagaacttcttgaagaaa 1607 ||||||| || || ||| ||||||| || |||||||||||||| || ||||||||||||| Sbjct: 1069 tgttaccttctctagagttggttacaaaaatgatagaggatgttgagcttcttgaagaaa 1010 Query: 1608 aagctaaagtagccaagcgtgaatcgtctatttctggtacgagcattctcaccaaggttg 1667 | |||||||||||||||| |||| | ||| || |||| || ||||||| ||||| |||| Sbjct: 1009 aggctaaagtagccaagcatgaagcatctgttgctgggacaggcattctgaccaaagttg 950 Query: 1668 aggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatgcatgctggtgagg 1727 ||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||| |||| Sbjct: 949 aggagctcagagaaatgttaactcatgcaaaggaagcaaatgatatgcatgctggcgagg 890 Query: 1728 tttttggcgagagatctattttgaccacggaggcacgggagctccaatcacgacttcaga 1787 ||||||| |||| | ||||||| ||||| |||||||| ||||| |||||||||||||||| Sbjct: 889 tttttggtgagaaagctattttaaccacagaggcacgtgagcttcaatcacgacttcaga 830 Query: 1788 ggctgtcagacgagaggaatagttatctagttgttattgaagagatacggcaaactcttg 1847 |||| ||||| |||||||||| ||||| || | |||||||||||||| |||||||||| Sbjct: 829 ggctttcagatgagaggaataaatatctggtgataattgaagagatacgccaaactcttg 770 Query: 1848 aggaaagattggttgctgcacagcaggaatatgaagcagccgtgaaggaaaaagtcgaga 1907 | |||||||||| ||||||||| || ||| || |||||||| ||| ||||| | || | Sbjct: 769 atgaaagattggctgctgcacaacaagaaattgcagcagccgagaaagaaaagattgaaa 710 Query: 1908 aggaagcttctgctcaggcactactcagtgaacaggaaagggagatgaattccattgttg 1967 |||| ||| |||||||||||||||| ||||||||||| | ||||||||| ||||||| Sbjct: 709 aggaggctgctgctcaggcactacttgatgaacaggaaaagacgatgaattctattgttg 650 Query: 1968 aagaatcaagaaagttgcagaaagaagcagaggagaatttgaagctgaaggaattcttgg 2027 |||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 649 aagaatcaagaaagctgcagaaagaagctgaggagaacctgaagttgaaggaattcttgg 590 Query: 2028 ttgagcggggtcaaattgttgatacactacaaggtgagatggctgt 2073 |||||||||| ||||||||||||| || ||||||||||||||||| Sbjct: 589 ttgagcggggccaaattgttgatatgctgcaaggtgagatggctgt 544 Score = 83.8 bits (42), Expect = 3e-12 Identities = 105/126 (83%) Strand = Plus / Minus Query: 2108 gtggatgagcgcttatcttggagcaagttgcagcgatcaacaatgtcaagtctctcctct 2167 |||||||||||| |||| | ||||| ||||||||| ||| | ||||| || ||||| ||| Sbjct: 509 gtggatgagcgcctatcattgagcaggttgcagcgctcagctatgtcgagcctctcttct 450 Query: 2168 tcactgcattcttcgcttcacaagagtgcgagttcgtcagacaggaccaccgaagccgtt 2227 |||||||||||||| | ||||||||| |||||| || || ||||| ||||||||| | Sbjct: 449 tcactgcattcttctcatcacaagagctggagttcctcggataggactaccgaagccatc 390 Query: 2228 gagtct 2233 |||||| Sbjct: 389 gagtct 384
>emb|CT832691.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212H18, full insert sequence Length = 2215 Score = 309 bits (156), Expect = 3e-80 Identities = 297/344 (86%) Strand = Plus / Plus Query: 1907 aaggaagcttctgctcaggcactactcagtgaacaggaaagggagatgaattccattgtt 1966 ||||||||||||||||||||||| || ||| ||||||| ||||||||| | ||| Sbjct: 1584 aaggaagcttctgctcaggcactgcttgatgagcaggaaaaggagatgaacttagccgtt 1643 Query: 1967 gaagaatcaagaaagttgcagaaagaagcagaggagaatttgaagctgaaggaattcttg 2026 ||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 1644 gaagaatcaagaaagctgcagaaagaagctgaggagaatttaaagctgaaggcattcttg 1703 Query: 2027 gttgagcggggtcaaattgttgatacactacaaggtgagatggctgtcatttgcgaggat 2086 ||||||||||||||||| ||||||||| | |||||||||||| |||| || || |||||| Sbjct: 1704 gttgagcggggtcaaatcgttgatacattgcaaggtgagatgactgtgatctgtgaggat 1763 Query: 2087 gtgtctcaactcaagcaaatagtggatgagcgcttatcttggagcaagttgcagcgatca 2146 ||||| |||||||| ||||||||||||||||||||||| | ||||||| ||||| ||| Sbjct: 1764 gtgtcccaactcaaacaaatagtggatgagcgcttatcgttctgcaagttacagcggtca 1823 Query: 2147 acaatgtcaagtctctcctcttcactgcattcttcgcttcacaagagtgcgagttcgtca 2206 | |||||| || ||||||||||| ||||| ||||||||||||||||||| |||||| | Sbjct: 1824 aaaatgtcgagcctctcctcttcgctgcaatcttcgcttcacaagagtgggagttctgct 1883 Query: 2207 gacaggaccaccgaagccgttgagtctaaagataaacatacagt 2250 || ||| | | ||||| |||||||||| ||||||||||||||| Sbjct: 1884 gatagggctattgaagcagttgagtctacagataaacatacagt 1927 Score = 305 bits (154), Expect = 4e-79 Identities = 283/326 (86%) Strand = Plus / Plus Query: 1544 gatctgttaccctcacttgagctggttactaagatgatagaggatgtagaacttcttgaa 1603 ||||||||||| || || ||| |||| ||||||||||| ||||||||||| |||| ||| Sbjct: 1221 gatctgttaccttctctagagttggtctctaagatgatacaggatgtagaagttctggaa 1280 Query: 1604 gaaaaagctaaagtagccaagcgtgaatcgtctatttctggtacgagcattctcaccaag 1663 ||||| ||| |||| ||||||| |||||| |||||| |||| || |||||||||||||| Sbjct: 1281 gaaaaggctgaagtggccaagcatgaatcatctattgctgggacaagcattctcaccaaa 1340 Query: 1664 gttgaggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatgcatgctggt 1723 || | | |||| || |||||||| |||||||| || ||||||||||||||||||||| || Sbjct: 1341 gtggggaagctgaaggaaatgttaaatcatgcgaaggaagcaaatgatatgcatgcttgt 1400 Query: 1724 gaggtttttggcgagagatctattttgaccacggaggcacgggagctccaatcacgactt 1783 ||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 1401 gaggtttttggtgagaaatctattttaaccacagaggcacgggagctccaatcgcgactt 1460 Query: 1784 cagaggctgtcagacgagaggaatagttatctagttgttattgaagagatacggcaaact 1843 |||||||||||||| |||||||| | |||||||| || ||||| |||||||| ||||| Sbjct: 1461 cagaggctgtcagatgagaggaagaactatctagtggtaattgaggagatacgccaaaca 1520 Query: 1844 cttgaggaaagattggttgctgcaca 1869 |||||| | ||||||||||||||||| Sbjct: 1521 cttgagcacagattggttgctgcaca 1546 Score = 105 bits (53), Expect = 8e-19 Identities = 128/153 (83%) Strand = Plus / Plus Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243 ||||||||| ||||||||||| || | | |||||||| ||| |||| ||||| ||||| Sbjct: 287 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 346 Query: 244 tcaggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattc 303 |||||||||||| ||||| ||||||||||| || || |||||||| || |||| ||||| Sbjct: 347 tcaggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttgattc 406 Query: 304 tgctgtggttgccgtccttgacgaagtcatgcc 336 |||||| || || ||||||| ||||||||||| Sbjct: 407 tgctgtagtcgcaatccttgatgaagtcatgcc 439 Score = 54.0 bits (27), Expect = 0.003 Identities = 33/35 (94%) Strand = Plus / Plus Query: 2376 ccaacgaggatggctgggaactttgctgaactgaa 2410 |||||||||||||||||||| |||||||| ||||| Sbjct: 2041 ccaacgaggatggctgggaattttgctgacctgaa 2075
>ref|NM_001070864.1| Oryza sativa (japonica cultivar-group) Os10g0315400 (Os10g0315400) mRNA, complete cds Length = 2373 Score = 309 bits (156), Expect = 3e-80 Identities = 297/344 (86%) Strand = Plus / Plus Query: 1907 aaggaagcttctgctcaggcactactcagtgaacaggaaagggagatgaattccattgtt 1966 ||||||||||||||||||||||| || ||| ||||||| ||||||||| | ||| Sbjct: 1566 aaggaagcttctgctcaggcactgcttgatgagcaggaaaaggagatgaacttagccgtt 1625 Query: 1967 gaagaatcaagaaagttgcagaaagaagcagaggagaatttgaagctgaaggaattcttg 2026 ||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 1626 gaagaatcaagaaagctgcagaaagaagctgaggagaatttaaagctgaaggcattcttg 1685 Query: 2027 gttgagcggggtcaaattgttgatacactacaaggtgagatggctgtcatttgcgaggat 2086 ||||||||||||||||| ||||||||| | |||||||||||| |||| || || |||||| Sbjct: 1686 gttgagcggggtcaaatcgttgatacattgcaaggtgagatgactgtgatctgtgaggat 1745 Query: 2087 gtgtctcaactcaagcaaatagtggatgagcgcttatcttggagcaagttgcagcgatca 2146 ||||| |||||||| ||||||||||||||||||||||| | ||||||| ||||| ||| Sbjct: 1746 gtgtcccaactcaaacaaatagtggatgagcgcttatcgttctgcaagttacagcggtca 1805 Query: 2147 acaatgtcaagtctctcctcttcactgcattcttcgcttcacaagagtgcgagttcgtca 2206 | |||||| || ||||||||||| ||||| ||||||||||||||||||| |||||| | Sbjct: 1806 aaaatgtcgagcctctcctcttcgctgcaatcttcgcttcacaagagtgggagttctgct 1865 Query: 2207 gacaggaccaccgaagccgttgagtctaaagataaacatacagt 2250 || ||| | | ||||| |||||||||| ||||||||||||||| Sbjct: 1866 gatagggctattgaagcagttgagtctacagataaacatacagt 1909 Score = 305 bits (154), Expect = 4e-79 Identities = 283/326 (86%) Strand = Plus / Plus Query: 1544 gatctgttaccctcacttgagctggttactaagatgatagaggatgtagaacttcttgaa 1603 ||||||||||| || || ||| |||| ||||||||||| ||||||||||| |||| ||| Sbjct: 1203 gatctgttaccttctctagagttggtctctaagatgatacaggatgtagaagttctggaa 1262 Query: 1604 gaaaaagctaaagtagccaagcgtgaatcgtctatttctggtacgagcattctcaccaag 1663 ||||| ||| |||| ||||||| |||||| |||||| |||| || |||||||||||||| Sbjct: 1263 gaaaaggctgaagtggccaagcatgaatcatctattgctgggacaagcattctcaccaaa 1322 Query: 1664 gttgaggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatgcatgctggt 1723 || | | |||| || |||||||| |||||||| || ||||||||||||||||||||| || Sbjct: 1323 gtggggaagctgaaggaaatgttaaatcatgcgaaggaagcaaatgatatgcatgcttgt 1382 Query: 1724 gaggtttttggcgagagatctattttgaccacggaggcacgggagctccaatcacgactt 1783 ||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 1383 gaggtttttggtgagaaatctattttaaccacagaggcacgggagctccaatcgcgactt 1442 Query: 1784 cagaggctgtcagacgagaggaatagttatctagttgttattgaagagatacggcaaact 1843 |||||||||||||| |||||||| | |||||||| || ||||| |||||||| ||||| Sbjct: 1443 cagaggctgtcagatgagaggaagaactatctagtggtaattgaggagatacgccaaaca 1502 Query: 1844 cttgaggaaagattggttgctgcaca 1869 |||||| | ||||||||||||||||| Sbjct: 1503 cttgagcacagattggttgctgcaca 1528 Score = 105 bits (53), Expect = 8e-19 Identities = 128/153 (83%) Strand = Plus / Plus Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243 ||||||||| ||||||||||| || | | |||||||| ||| |||| ||||| ||||| Sbjct: 269 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 328 Query: 244 tcaggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattc 303 |||||||||||| ||||| ||||||||||| || || |||||||| || |||| ||||| Sbjct: 329 tcaggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttgattc 388 Query: 304 tgctgtggttgccgtccttgacgaagtcatgcc 336 |||||| || || ||||||| ||||||||||| Sbjct: 389 tgctgtagtcgcaatccttgatgaagtcatgcc 421 Score = 54.0 bits (27), Expect = 0.003 Identities = 33/35 (94%) Strand = Plus / Plus Query: 2376 ccaacgaggatggctgggaactttgctgaactgaa 2410 |||||||||||||||||||| |||||||| ||||| Sbjct: 2023 ccaacgaggatggctgggaattttgctgacctgaa 2057
>dbj|AK069438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022N13, full insert sequence Length = 3590 Score = 309 bits (156), Expect = 3e-80 Identities = 297/344 (86%) Strand = Plus / Plus Query: 1907 aaggaagcttctgctcaggcactactcagtgaacaggaaagggagatgaattccattgtt 1966 ||||||||||||||||||||||| || ||| ||||||| ||||||||| | ||| Sbjct: 2783 aaggaagcttctgctcaggcactgcttgatgagcaggaaaaggagatgaacttagccgtt 2842 Query: 1967 gaagaatcaagaaagttgcagaaagaagcagaggagaatttgaagctgaaggaattcttg 2026 ||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 2843 gaagaatcaagaaagctgcagaaagaagctgaggagaatttaaagctgaaggcattcttg 2902 Query: 2027 gttgagcggggtcaaattgttgatacactacaaggtgagatggctgtcatttgcgaggat 2086 ||||||||||||||||| ||||||||| | |||||||||||| |||| || || |||||| Sbjct: 2903 gttgagcggggtcaaatcgttgatacattgcaaggtgagatgactgtgatctgtgaggat 2962 Query: 2087 gtgtctcaactcaagcaaatagtggatgagcgcttatcttggagcaagttgcagcgatca 2146 ||||| |||||||| ||||||||||||||||||||||| | ||||||| ||||| ||| Sbjct: 2963 gtgtcccaactcaaacaaatagtggatgagcgcttatcgttctgcaagttacagcggtca 3022 Query: 2147 acaatgtcaagtctctcctcttcactgcattcttcgcttcacaagagtgcgagttcgtca 2206 | |||||| || ||||||||||| ||||| ||||||||||||||||||| |||||| | Sbjct: 3023 aaaatgtcgagcctctcctcttcgctgcaatcttcgcttcacaagagtgggagttctgct 3082 Query: 2207 gacaggaccaccgaagccgttgagtctaaagataaacatacagt 2250 || ||| | | ||||| |||||||||| ||||||||||||||| Sbjct: 3083 gatagggctattgaagcagttgagtctacagataaacatacagt 3126 Score = 305 bits (154), Expect = 4e-79 Identities = 283/326 (86%) Strand = Plus / Plus Query: 1544 gatctgttaccctcacttgagctggttactaagatgatagaggatgtagaacttcttgaa 1603 ||||||||||| || || ||| |||| ||||||||||| ||||||||||| |||| ||| Sbjct: 2420 gatctgttaccttctctagagttggtctctaagatgatacaggatgtagaagttctggaa 2479 Query: 1604 gaaaaagctaaagtagccaagcgtgaatcgtctatttctggtacgagcattctcaccaag 1663 ||||| ||| |||| ||||||| |||||| |||||| |||| || |||||||||||||| Sbjct: 2480 gaaaaggctgaagtggccaagcatgaatcatctattgctgggacaagcattctcaccaaa 2539 Query: 1664 gttgaggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatgcatgctggt 1723 || | | |||| || |||||||| |||||||| || ||||||||||||||||||||| || Sbjct: 2540 gtggggaagctgaaggaaatgttaaatcatgcgaaggaagcaaatgatatgcatgcttgt 2599 Query: 1724 gaggtttttggcgagagatctattttgaccacggaggcacgggagctccaatcacgactt 1783 ||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 2600 gaggtttttggtgagaaatctattttaaccacagaggcacgggagctccaatcgcgactt 2659 Query: 1784 cagaggctgtcagacgagaggaatagttatctagttgttattgaagagatacggcaaact 1843 |||||||||||||| |||||||| | |||||||| || ||||| |||||||| ||||| Sbjct: 2660 cagaggctgtcagatgagaggaagaactatctagtggtaattgaggagatacgccaaaca 2719 Query: 1844 cttgaggaaagattggttgctgcaca 1869 |||||| | ||||||||||||||||| Sbjct: 2720 cttgagcacagattggttgctgcaca 2745 Score = 97.6 bits (49), Expect = 2e-16 Identities = 127/153 (83%) Strand = Plus / Plus Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243 ||||||||| ||||||||||| || | | |||||||| ||| |||| ||||| ||||| Sbjct: 270 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 329 Query: 244 tcaggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattc 303 |||||||||||| ||||| ||||||||||| || || |||||||| || ||| ||||| Sbjct: 330 tcaggttgatcctcgcatactgaaggctgttgccattgagcaccacaacaatgttgattc 389 Query: 304 tgctgtggttgccgtccttgacgaagtcatgcc 336 |||||| || || ||||||| ||||||||||| Sbjct: 390 tgctgtagtcgcaatccttgatgaagtcatgcc 422 Score = 54.0 bits (27), Expect = 0.003 Identities = 33/35 (94%) Strand = Plus / Plus Query: 2376 ccaacgaggatggctgggaactttgctgaactgaa 2410 |||||||||||||||||||| |||||||| ||||| Sbjct: 3240 ccaacgaggatggctgggaattttgctgacctgaa 3274
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 159 bits (80), Expect = 6e-35 Identities = 164/192 (85%) Strand = Plus / Plus Query: 2059 aggtgagatggctgtcatttgcgaggatgtgtctcaactcaagcaaatagtggatgagcg 2118 |||||||||| |||| || || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 7724068 aggtgagatgactgtgatctgtgaggatgtgtcccaactcaaacaaatagtggatgagcg 7724127 Query: 2119 cttatcttggagcaagttgcagcgatcaacaatgtcaagtctctcctcttcactgcattc 2178 |||||| | ||||||| ||||| |||| |||||| || ||||||||||| ||||| || Sbjct: 7724128 cttatcgttctgcaagttacagcggtcaaaaatgtcgagcctctcctcttcgctgcaatc 7724187 Query: 2179 ttcgcttcacaagagtgcgagttcgtcagacaggaccaccgaagccgttgagtctaaaga 2238 ||||||||||||||||| |||||| | || ||| | | ||||| |||||||||| ||| Sbjct: 7724188 ttcgcttcacaagagtgggagttctgctgatagggctattgaagcagttgagtctacaga 7724247 Query: 2239 taaacatacagt 2250 |||||||||||| Sbjct: 7724248 taaacatacagt 7724259 Score = 133 bits (67), Expect = 4e-27 Identities = 145/171 (84%) Strand = Plus / Plus Query: 1544 gatctgttaccctcacttgagctggttactaagatgatagaggatgtagaacttcttgaa 1603 ||||||||||| || || ||| |||| ||||||||||| ||||||||||| |||| ||| Sbjct: 7721299 gatctgttaccttctctagagttggtctctaagatgatacaggatgtagaagttctggaa 7721358 Query: 1604 gaaaaagctaaagtagccaagcgtgaatcgtctatttctggtacgagcattctcaccaag 1663 ||||| ||| |||| ||||||| |||||| |||||| |||| || |||||||||||||| Sbjct: 7721359 gaaaaggctgaagtggccaagcatgaatcatctattgctgggacaagcattctcaccaaa 7721418 Query: 1664 gttgaggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatg 1714 || | | |||| || |||||||| |||||||| || ||||||||||||||| Sbjct: 7721419 gtggggaagctgaaggaaatgttaaatcatgcgaaggaagcaaatgatatg 7721469 Score = 131 bits (66), Expect = 1e-26 Identities = 102/114 (89%) Strand = Plus / Plus Query: 1714 gcatgctggtgaggtttttggcgagagatctattttgaccacggaggcacgggagctcca 1773 ||||||| ||||||||||||| |||| ||||||||| ||||| ||||||||||||||||| Sbjct: 7721561 gcatgcttgtgaggtttttggtgagaaatctattttaaccacagaggcacgggagctcca 7721620 Query: 1774 atcacgacttcagaggctgtcagacgagaggaatagttatctagttgttattga 1827 ||| |||||||||||||||||||| |||||||| | |||||||| || ||||| Sbjct: 7721621 atcgcgacttcagaggctgtcagatgagaggaagaactatctagtggtaattga 7721674 Score = 89.7 bits (45), Expect = 5e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 1907 aaggaagcttctgctcaggcactactcagtgaacaggaaagggagatgaattccattgtt 1966 ||||||||||||||||||||||| || ||| ||||||| ||||||||| | ||| Sbjct: 7722895 aaggaagcttctgctcaggcactgcttgatgagcaggaaaaggagatgaacttagccgtt 7722954 Query: 1967 gaagaatcaagaaagttgcagaaagaagcagaggagaattt 2007 ||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 7722955 gaagaatcaagaaagctgcagaaagaagctgaggagaattt 7722995 Score = 71.9 bits (36), Expect = 1e-08 Identities = 78/92 (84%) Strand = Plus / Plus Query: 245 caggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattct 304 ||||||||||| ||||| ||||||||||| || || |||||||| || |||| |||||| Sbjct: 7718104 caggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttgattct 7718163 Query: 305 gctgtggttgccgtccttgacgaagtcatgcc 336 ||||| || || ||||||| ||||||||||| Sbjct: 7718164 gctgtagtcgcaatccttgatgaagtcatgcc 7718195 Score = 71.9 bits (36), Expect = 1e-08 Identities = 42/44 (95%) Strand = Plus / Plus Query: 2010 agctgaaggaattcttggttgagcggggtcaaattgttgataca 2053 ||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 7723242 agctgaaggcattcttggttgagcggggtcaaatcgttgataca 7723285 Score = 54.0 bits (27), Expect = 0.003 Identities = 33/35 (94%) Strand = Plus / Plus Query: 2376 ccaacgaggatggctgggaactttgctgaactgaa 2410 |||||||||||||||||||| |||||||| ||||| Sbjct: 7724373 ccaacgaggatggctgggaattttgctgacctgaa 7724407 Score = 48.1 bits (24), Expect = 0.17 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1830 agatacggcaaactcttgaggaaagattggttgctgcaca 1869 ||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 7722818 agatacgccaaacacttgagcacagattggttgctgcaca 7722857 Score = 44.1 bits (22), Expect = 2.6 Identities = 55/66 (83%) Strand = Plus / Plus Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243 ||||||||| ||||||||||| || | | |||||||| ||| |||| ||||| ||||| Sbjct: 7717735 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 7717794 Query: 244 tcaggt 249 |||||| Sbjct: 7717795 tcaggt 7717800
>gb|AC022352.5|AC022352 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0034E23, from chromosome 10, complete sequence Length = 139398 Score = 159 bits (80), Expect = 6e-35 Identities = 164/192 (85%) Strand = Plus / Plus Query: 2059 aggtgagatggctgtcatttgcgaggatgtgtctcaactcaagcaaatagtggatgagcg 2118 |||||||||| |||| || || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 29947 aggtgagatgactgtgatctgtgaggatgtgtcccaactcaaacaaatagtggatgagcg 30006 Query: 2119 cttatcttggagcaagttgcagcgatcaacaatgtcaagtctctcctcttcactgcattc 2178 |||||| | ||||||| ||||| |||| |||||| || ||||||||||| ||||| || Sbjct: 30007 cttatcgttctgcaagttacagcggtcaaaaatgtcgagcctctcctcttcgctgcaatc 30066 Query: 2179 ttcgcttcacaagagtgcgagttcgtcagacaggaccaccgaagccgttgagtctaaaga 2238 ||||||||||||||||| |||||| | || ||| | | ||||| |||||||||| ||| Sbjct: 30067 ttcgcttcacaagagtgggagttctgctgatagggctattgaagcagttgagtctacaga 30126 Query: 2239 taaacatacagt 2250 |||||||||||| Sbjct: 30127 taaacatacagt 30138 Score = 133 bits (67), Expect = 4e-27 Identities = 145/171 (84%) Strand = Plus / Plus Query: 1544 gatctgttaccctcacttgagctggttactaagatgatagaggatgtagaacttcttgaa 1603 ||||||||||| || || ||| |||| ||||||||||| ||||||||||| |||| ||| Sbjct: 27178 gatctgttaccttctctagagttggtctctaagatgatacaggatgtagaagttctggaa 27237 Query: 1604 gaaaaagctaaagtagccaagcgtgaatcgtctatttctggtacgagcattctcaccaag 1663 ||||| ||| |||| ||||||| |||||| |||||| |||| || |||||||||||||| Sbjct: 27238 gaaaaggctgaagtggccaagcatgaatcatctattgctgggacaagcattctcaccaaa 27297 Query: 1664 gttgaggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatg 1714 || | | |||| || |||||||| |||||||| || ||||||||||||||| Sbjct: 27298 gtggggaagctgaaggaaatgttaaatcatgcgaaggaagcaaatgatatg 27348 Score = 131 bits (66), Expect = 1e-26 Identities = 102/114 (89%) Strand = Plus / Plus Query: 1714 gcatgctggtgaggtttttggcgagagatctattttgaccacggaggcacgggagctcca 1773 ||||||| ||||||||||||| |||| ||||||||| ||||| ||||||||||||||||| Sbjct: 27440 gcatgcttgtgaggtttttggtgagaaatctattttaaccacagaggcacgggagctcca 27499 Query: 1774 atcacgacttcagaggctgtcagacgagaggaatagttatctagttgttattga 1827 ||| |||||||||||||||||||| |||||||| | |||||||| || ||||| Sbjct: 27500 atcgcgacttcagaggctgtcagatgagaggaagaactatctagtggtaattga 27553 Score = 89.7 bits (45), Expect = 5e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 1907 aaggaagcttctgctcaggcactactcagtgaacaggaaagggagatgaattccattgtt 1966 ||||||||||||||||||||||| || ||| ||||||| ||||||||| | ||| Sbjct: 28774 aaggaagcttctgctcaggcactgcttgatgagcaggaaaaggagatgaacttagccgtt 28833 Query: 1967 gaagaatcaagaaagttgcagaaagaagcagaggagaattt 2007 ||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 28834 gaagaatcaagaaagctgcagaaagaagctgaggagaattt 28874 Score = 71.9 bits (36), Expect = 1e-08 Identities = 78/92 (84%) Strand = Plus / Plus Query: 245 caggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattct 304 ||||||||||| ||||| ||||||||||| || || |||||||| || |||| |||||| Sbjct: 23983 caggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttgattct 24042 Query: 305 gctgtggttgccgtccttgacgaagtcatgcc 336 ||||| || || ||||||| ||||||||||| Sbjct: 24043 gctgtagtcgcaatccttgatgaagtcatgcc 24074 Score = 71.9 bits (36), Expect = 1e-08 Identities = 42/44 (95%) Strand = Plus / Plus Query: 2010 agctgaaggaattcttggttgagcggggtcaaattgttgataca 2053 ||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 29121 agctgaaggcattcttggttgagcggggtcaaatcgttgataca 29164 Score = 54.0 bits (27), Expect = 0.003 Identities = 33/35 (94%) Strand = Plus / Plus Query: 2376 ccaacgaggatggctgggaactttgctgaactgaa 2410 |||||||||||||||||||| |||||||| ||||| Sbjct: 30252 ccaacgaggatggctgggaattttgctgacctgaa 30286 Score = 48.1 bits (24), Expect = 0.17 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1830 agatacggcaaactcttgaggaaagattggttgctgcaca 1869 ||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 28697 agatacgccaaacacttgagcacagattggttgctgcaca 28736 Score = 44.1 bits (22), Expect = 2.6 Identities = 55/66 (83%) Strand = Plus / Plus Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243 ||||||||| ||||||||||| || | | |||||||| ||| |||| ||||| ||||| Sbjct: 23614 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 23673 Query: 244 tcaggt 249 |||||| Sbjct: 23674 tcaggt 23679
>ref|NM_100211.2| Arabidopsis thaliana unknown protein (AT1G03290) mRNA, complete cds Length = 1726 Score = 52.0 bits (26), Expect = 0.011 Identities = 53/62 (85%) Strand = Plus / Plus Query: 1661 aaggttgaggagctcaaagaaatgttgaatcatgcaaaagaagcaaatgatatgcatgct 1720 ||||||||||||||||| | ||| || | ||||| || ||||||||||| ||||||||| Sbjct: 1018 aaggttgaggagctcaagaagatgctggaacatgcgaaggaagcaaatgacatgcatgct 1077 Query: 1721 gg 1722 || Sbjct: 1078 gg 1079
>dbj|AK234586.1| Sus scrofa mRNA, clone:OVR010091F11, expressed in ovary Length = 1310 Score = 50.1 bits (25), Expect = 0.042 Identities = 25/25 (100%) Strand = Plus / Minus Query: 1889 gtgaaggaaaaagtcgagaaggaag 1913 ||||||||||||||||||||||||| Sbjct: 161 gtgaaggaaaaagtcgagaaggaag 137
>gb|CP000395.1| Borrelia afzelii PKo, complete genome Length = 905394 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1688 aatcatgcaaaagaagcaaatg 1709 |||||||||||||||||||||| Sbjct: 849352 aatcatgcaaaagaagcaaatg 849373
>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence Length = 176643 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 857 aaaaatggcaatgacagcataa 878 |||||||||||||||||||||| Sbjct: 8115 aaaaatggcaatgacagcataa 8136
>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence Length = 168721 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 857 aaaaatggcaatgacagcataa 878 |||||||||||||||||||||| Sbjct: 149620 aaaaatggcaatgacagcataa 149641
>emb|AL589685.17| Human DNA sequence from clone RP11-443G18 on chromosome 1 Contains the 5' end of the gene for Est1p-like protein B (EST1B), novel gene (MGC13102), novel gene (MGC31963), a von Hippel-Lindau syndrome (VHL) pseudogene, the CCT3 gene for chaperonin containing TCP1 subunit 3 (gamma), the gene for SSTK-interacting protein (SSTK-IP) and the 5' end of the RHBG gene for Rhesus blood group B glycoprotein, complete sequence Length = 107819 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 854 gggaaaaatggcaatgacagca 875 |||||||||||||||||||||| Sbjct: 36306 gggaaaaatggcaatgacagca 36327 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 496,372,018 Number of extensions: 26778290 Number of successful extensions: 137655 Number of sequences better than 10.0: 12 Number of HSP's gapped: 137655 Number of HSP's successfully gapped: 49 Length of query: 2691 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2668 Effective length of database: 18,503,978,556 Effective search space: 49368614787408 Effective search space used: 49368614787408 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
