ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf47e14 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g34614:12001.t006909:unspliced-genomic DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide,| putative, expressed Length = 2459 Score = 79.9 bits (168), Expect(3) = 3e-23 Identities = 31/34 (91%), Positives = 31/34 (91%) Frame = +3 / +2 Query: 177 LCGDCGAENTLKTGDVIQCRECGYRILYKKRTRR 278 L DCGAENTLK GDVIQCRECGYRILYKKRTRR Sbjct: 620 LSSDCGAENTLKPGDVIQCRECGYRILYKKRTRR 721 Score = 43.2 bits (88), Expect(3) = 3e-23 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +3 / +2 Query: 141 PMDPQQPEPVSYLCG 185 PMDPQQPEPVSYLCG Sbjct: 158 PMDPQQPEPVSYLCG 202 Score = 28.1 bits (55), Expect(3) = 3e-23 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +1 / +2 Query: 280 LFNMKLAEDKGRN 318 LFNMK AEDKGR+ Sbjct: 2201 LFNMKHAEDKGRH 2239 Score = 67.5 bits (141), Expect(4) = 1e-17 Identities = 28/32 (87%), Positives = 29/32 (90%) Frame = -2 / -3 Query: 280 IRRVRFLYRMR*PHSRHWITSPVLSVFSAPQS 185 +RRVRFL RMR*PHSRHWITSP SVFSAPQS Sbjct: 723 LRRVRFL*RMR*PHSRHWITSPGFSVFSAPQS 628 Score = 37.7 bits (76), Expect(4) = 1e-17 Identities = 14/15 (93%), Positives = 14/15 (93%) Frame = -2 / -3 Query: 184 PHR*LTGSGCCGSIG 140 P R*LTGSGCCGSIG Sbjct: 201 PQR*LTGSGCCGSIG 157 Score = 22.6 bits (43), Expect(4) = 1e-17 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -1 / -3 Query: 428 FYHFKPKSNGH 396 F HF KSNGH Sbjct: 2352 FNHFYRKSNGH 2320 Score = 22.6 bits (43), Expect(4) = 1e-17 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -2 / -1 Query: 313 FLCLQRASY*TIRRVRFLYR 254 F LQRASY*T R L + Sbjct: 2234 FPYLQRASY*TTANTRHLIK 2175 Score = 57.0 bits (118), Expect(2) = 3e-08 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = +2 / +1 Query: 179 VRRLRS*EHTQDRGCDPVP*MWLPHSVQEAH 271 V RLRS*EHT+ R CDPVP*MWL H +QEA+ Sbjct: 622 VFRLRS*EHTEARRCDPVP*MWLSHPLQEAY 714 Score = 23.5 bits (45), Expect(2) = 3e-08 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 / +3 Query: 142 RWIRSSRSLSAICAEI 189 RWIR++ S SAI E+ Sbjct: 159 RWIRNNLSPSAISVEV 206 Score = 57.0 bits (118), Expect = 1e-07 Identities = 22/30 (73%), Positives = 25/30 (83%) Frame = -3 / -1 Query: 267 ASCTECGNHIHGTGSHPLS*VCSQLRNLRT 178 ASC C +HIHGTGSH L+ VCSQLRNL+T Sbjct: 710 ASCRGCDSHIHGTGSHLLASVCSQLRNLKT 621 Score = 52.8 bits (109), Expect(2) = 2e-06 Identities = 21/35 (60%), Positives = 27/35 (77%) Frame = -1 / -2 Query: 290 ILNNPTSALLVQNAVTTFTALDHIPCLECVLSSAI 186 + + P LLV++A+ TFTALDHI L+CVLSSAI Sbjct: 733 VKHTPAGTLLVEDAIATFTALDHISWLQCVLSSAI 629 Score = 21.7 bits (41), Expect(2) = 2e-06 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = -3 / -2 Query: 312 SFVFSELHIEQ 280 S +FS LHIEQ Sbjct: 2233 SLIFSVLHIEQ 2201 Score = 46.4 bits (95), Expect = 2e-04 Identities = 22/36 (61%), Positives = 25/36 (69%) Frame = +1 / +3 Query: 175 ICAEIAELRTHSRQGM*SSAVNVVTAFCTRSALVGL 282 +C +IAELRTH Q M*SSAVNV A TRS G+ Sbjct: 618 LCLQIAELRTH*SQEM*SSAVNVAIASSTRSVPAGV 725
>LOC_Os05g05980:12005.t00488:unspliced-genomic DNA directed RNA polymerase, 7 kDa subunit family protein| Length = 4006 Score = 82.2 bits (173), Expect(3) = 6e-22 Identities = 32/37 (86%), Positives = 33/37 (89%) Frame = +3 / +1 Query: 168 VSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRR 278 V +L DCGAENTLK GDVIQCRECGYRILYKKRTRR Sbjct: 796 VIFLSSDCGAENTLKPGDVIQCRECGYRILYKKRTRR 906 Score = 43.2 bits (88), Expect(3) = 6e-22 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +3 / +3 Query: 141 PMDPQQPEPVSYLCG 185 PMDPQQPEPVSYLCG Sbjct: 528 PMDPQQPEPVSYLCG 572 Score = 23.1 bits (44), Expect(3) = 6e-22 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = +1 / +2 Query: 280 LFNMKLAEDKG 312 LFNMK AED G Sbjct: 2381 LFNMKRAEDMG 2413 Score = 70.7 bits (148), Expect(3) = 2e-17 Identities = 30/38 (78%), Positives = 32/38 (84%) Frame = -2 / -3 Query: 280 IRRVRFLYRMR*PHSRHWITSPVLSVFSAPQSPHR*LT 167 +RRVRFL RMR*PHSRHWITSP SVFSAPQS R +T Sbjct: 908 LRRVRFL*RMR*PHSRHWITSPGFSVFSAPQSEERKIT 795 Score = 37.7 bits (76), Expect(3) = 2e-17 Identities = 14/15 (93%), Positives = 14/15 (93%) Frame = -2 / -1 Query: 184 PHR*LTGSGCCGSIG 140 P R*LTGSGCCGSIG Sbjct: 571 PQR*LTGSGCCGSIG 527 Score = 24.4 bits (47), Expect(3) = 2e-17 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -1 / -2 Query: 314 LPLSSASFILNN 279 +P+SSA FILNN Sbjct: 2415 VPISSARFILNN 2380 Score = 60.6 bits (126), Expect(2) = 5e-09 Identities = 24/35 (68%), Positives = 27/35 (77%) Frame = +2 / +3 Query: 167 CQLSVRRLRS*EHTQDRGCDPVP*MWLPHSVQEAH 271 C S+ RL S*EHT+ R CDPVP*MWL H +QEAH Sbjct: 795 CDFSLFRLWS*EHTEARRCDPVP*MWLSHPLQEAH 899 Score = 23.5 bits (45), Expect(2) = 5e-09 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 / +1 Query: 142 RWIRSSRSLSAICAEI 189 RWIR++ S SAI E+ Sbjct: 529 RWIRNNLSPSAISVEV 576 Score = 57.0 bits (118), Expect = 1e-07 Identities = 22/33 (66%), Positives = 25/33 (75%) Frame = -3 / -1 Query: 279 SDECASCTECGNHIHGTGSHPLS*VCSQLRNLR 181 S CASC C +HIHGTGSH L+ VCSQL NL+ Sbjct: 907 SGGCASCRGCDSHIHGTGSHLLASVCSQLHNLK 809 Score = 53.3 bits (110), Expect = 1e-06 Identities = 22/35 (62%), Positives = 27/35 (77%) Frame = -1 / -2 Query: 290 ILNNPTSALLVQNAVTTFTALDHIPCLECVLSSAI 186 I + P ALLV++A+ TFTALDHI L+CVLSS I Sbjct: 918 IKHTPAGALLVEDAIATFTALDHISWLQCVLSSTI 814 Score = 41.8 bits (85), Expect = 0.004 Identities = 21/33 (63%), Positives = 23/33 (69%) Frame = +1 / +2 Query: 184 EIAELRTHSRQGM*SSAVNVVTAFCTRSALVGL 282 +I ELRTH Q M*SSAVNV A TRSA G+ Sbjct: 812 QIVELRTH*SQEM*SSAVNVAIASSTRSAPAGV 910
>LOC_Os07g01450:12007.t00044:unspliced-genomic DNA directed RNA polymerase, 7 kDa subunit family protein,| expressed Length = 1925 Score = 54.7 bits (113), Expect(2) = 2e-13 Identities = 21/31 (67%), Positives = 23/31 (74%) Frame = +3 / +1 Query: 186 DCGAENTLKTGDVIQCRECGYRILYKKRTRR 278 DCG E LK DV+QC ECG RIL KKRTR+ Sbjct: 607 DCGTETLLKPTDVVQCHECGCRILCKKRTRQ 699 Score = 43.2 bits (88), Expect(2) = 2e-13 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = +3 / +3 Query: 129 SFPSPMDPQQPEPVSYLC 182 S P+PMDPQQP+PVSYLC Sbjct: 90 SSPAPMDPQQPKPVSYLC 143 Score = 47.3 bits (97), Expect(4) = 3e-11 Identities = 21/30 (70%), Positives = 21/30 (70%) Frame = -2 / -1 Query: 274 RVRFLYRMR*PHSRHWITSPVLSVFSAPQS 185 RVRFL RMR PHS HW TS LS S PQS Sbjct: 695 RVRFLQRMRQPHSWHWTTSVGLSKVSVPQS 606 Score = 32.2 bits (64), Expect(4) = 3e-11 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 / -2 Query: 181 HR*LTGSGCCGSIGEGK 131 HR*LTG GC GSIG G+ Sbjct: 142 HR*LTGFGC*GSIGAGE 92 Score = 24.4 bits (47), Expect(4) = 3e-11 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -1 / -3 Query: 428 FYHFKPKSNGHLRVS 384 +YHF+PK N +R S Sbjct: 1851 YYHFRPKFNEKIRHS 1807 Score = 23.1 bits (44), Expect(4) = 3e-11 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -1 / -1 Query: 314 LPLSSASFILNN 279 +P SSA FILNN Sbjct: 1703 IPSSSARFILNN 1668 Score = 38.2 bits (77), Expect(2) = 9e-04 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 / +3 Query: 185 RLRS*EHTQDRGCDPVP*MWLPHSVQEAH 271 RL +*+ TQ C PVP*MWL H +QEA+ Sbjct: 606 RLWN*DLTQTD*CCPVP*MWLSHPLQEAN 692 Score = 26.7 bits (52), Expect(2) = 9e-04 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 / +1 Query: 139 HRWIRSSRSLSAICAEI 189 H+WI SSR+ SAI A++ Sbjct: 100 HQWILSSRNPSAIYAQV 150 Score = 42.3 bits (86), Expect = 0.003 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = -3 / -2 Query: 267 ASCTECGNHIHGTGSHPLS*VCSQLRNLR 181 ASC C +HIHGTG H *V SQ NL+ Sbjct: 688 ASCRGCDSHIHGTGQHQSV*VRSQFHNLK 602
>LOC_Os07g07060:12007.t00585:unspliced-genomic prolyl-tRNA synthetase, putative, expressed| Length = 3702 Score = 32.7 bits (65), Expect(2) = 0.082 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 / +1 Query: 299 LKTKEETSFTVKCVP*DKATTMEKC 373 LK KEETS T++C P ++ +KC Sbjct: 2413 LKVKEETSATIRCFPFEQPEGAKKC 2487 Score = 22.1 bits (42), Expect(2) = 0.082 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = +1 / +1 Query: 226 SSAVNVVTAFCTRSALVGLFN 288 S++VNV+ FC + V F+ Sbjct: 2338 SNSVNVILCFCKLDSFVVYFS 2400
>LOC_Os08g32500:12008.t02995:unspliced-genomic permease, putative, expressed| Length = 4478 Score = 27.2 bits (53), Expect(2) = 2.1 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +2 / -1 Query: 449 DFRHLRIEIMHLWKL 493 D RHL+IE + +WKL Sbjct: 3680 DHRHLQIEALTIWKL 3636 Score = 22.6 bits (43), Expect(2) = 2.1 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +2 / -2 Query: 386 SRAGVHWTL 412 S AGVHWT+ Sbjct: 3826 SSAGVHWTI 3800
>LOC_Os07g07070:12007.t00586:unspliced-genomic anthranilate phosphoribosyltransferase-like protein, putative,| expressed Length = 3892 Score = 32.7 bits (65), Expect = 2.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 / -2 Query: 299 LKTKEETSFTVKCVP*DKATTMEKC 373 LK KEETS T++C P ++ +KC Sbjct: 3885 LKVKEETSATIRCFPFEQPEGAKKC 3811
>LOC_Os01g59070:12001.t05299:unspliced-genomic expressed protein| Length = 1782 Score = 32.7 bits (65), Expect = 2.2 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 / +2 Query: 23 GLAGESRIPSQVHYSRRIGFCPPSSPSR 106 G +GE R+ + SR G PPSSPSR Sbjct: 860 GTSGEHRVSLESASSRTAGLRPPSSPSR 943
>LOC_Os11g09490:12011.t00841:unspliced-genomic F-box domain containing protein, expressed| Length = 4469 Score = 31.3 bits (62), Expect = 5.6 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +3 / +1 Query: 375 LDSTHAQVSIGLWLEVVKTCQTCIEILDI*GLRL 476 L S H LW+ V +CQ + LDI GLRL Sbjct: 277 LYSKHDAPFANLWIRYVLSCQVRVLTLDIIGLRL 378
>LOC_Os06g14740:12006.t01349:unspliced-genomic ketose-bisphosphate aldolases family protein, expressed| Length = 15144 Score = 31.3 bits (62), Expect = 5.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -2 / -2 Query: 190 QSPHR*LTGSGCCGSIGEGKE 128 Q PH L G GCCG G+ K+ Sbjct: 149 QYPHPVLAGGGCCGGDGDTKQ 87
>LOC_Os05g50880:12005.t04518:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 4625 Score = 31.3 bits (62), Expect = 5.6 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 / +1 Query: 99 PHEP*LAKPYSFPSPMDPQQPEP 167 P +P L+ P+ P+P PQ P P Sbjct: 2680 PQDPALSPPHDLPAPSPPQAPAP 2748
>LOC_Os03g19630:12003.t01728:unspliced-genomic tuber-specific and sucrose-responsive element binding factor,| putative Length = 570 Score = 31.3 bits (62), Expect = 5.6 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 / +2 Query: 86 PPSSPSRTLAC*TLLLPFTDGSAAAGACQLSVR 184 PP++PS + T P TDGS +AG + R Sbjct: 266 PPTTPSSLASACTSTTPATDGSTSAGPSMAAAR 364
>LOC_Os01g13740:12001.t01235:unspliced-genomic myb-like DNA-binding domain, SHAQKYF class family protein, expressed| Length = 7104 Score = 31.3 bits (62), Expect = 5.6 Identities = 9/29 (31%), Positives = 21/29 (72%) Frame = -3 / -2 Query: 492 SFQRCIISILKCLKSQYMFDKFLPLQAKV 406 SF C++ + C++++ +FDK + ++A+V Sbjct: 1334 SFPLCVVELAVCVRARMVFDKIVIIRAEV 1248
>LOC_Os01g40620:12001.t03586:unspliced-genomic uncharacterized ACR, COG1565 family protein, expressed| Length = 4024 Score = 24.4 bits (47), Expect(2) = 6.9 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +2 / -3 Query: 239 MWLPHSVQEAH 271 +WLPH + EAH Sbjct: 983 LWLPHLLPEAH 951 Score = 23.5 bits (45), Expect(2) = 6.9 Identities = 7/17 (41%), Positives = 12/17 (70%) Frame = +3 / -3 Query: 339 CPETKLLQWRNVLDSTH 389 CP T L+ RN+++ +H Sbjct: 950 CPHTSHLRKRNIINCSH 900
>LOC_Os12g01210:12012.t00020:unspliced-genomic HCF152, putative, expressed| Length = 2464 Score = 24.0 bits (46), Expect(2) = 7.2 Identities = 9/24 (37%), Positives = 11/24 (45%) Frame = +3 / +2 Query: 135 PSPMDPQQPEPVSYLCGDCGAENT 206 P+P P P P S C D + T Sbjct: 548 PAPTTPTSPIPSSSPCSDAASSPT 619 Score = 24.0 bits (46), Expect(2) = 7.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 / +3 Query: 258 YKKRTRRIVQYEAR*RQRKKLHSL 329 + R RR+ + R RQR++LH L Sbjct: 723 FPPRHRRLQRRAQRLRQRRRLHPL 794
>LOC_Os12g39640:12012.t03643:unspliced-genomic DNA binding protein, putative, expressed| Length = 2748 Score = 30.9 bits (61), Expect = 7.8 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +3 / +2 Query: 417 EVVKTCQTCIEILDI*GLRLCIFGSWISKMVIIAVSSN 530 E + TC CI +L I + +CIF ++ K V ++S+ Sbjct: 1262 ENINTC*ACIALLSISCIFVCIFANFFLKRVYFFLTSS 1375
>LOC_Os08g05450:12008.t00439:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 7555 Score = 30.9 bits (61), Expect = 7.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 / +3 Query: 375 LDSTHAQVSIGLWLEVVKTCQTC 443 L TH+ +G WL +TC+TC Sbjct: 3417 LRRTHSTFPVGRWLRHCRTCRTC 3485
>LOC_Os06g41900:12006.t03882:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 7554 Score = 30.9 bits (61), Expect = 7.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 / +3 Query: 375 LDSTHAQVSIGLWLEVVKTCQTC 443 L TH+ +G WL +TC+TC Sbjct: 3417 LRRTHSTFPVGRWLRHCRTCRTC 3485
>LOC_Os06g29030:12006.t02607:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3768 Score = 30.9 bits (61), Expect = 7.8 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 / -2 Query: 101 RGCSAGRSLCDASSE 57 RGCSAGRSLC ++ E Sbjct: 1154 RGCSAGRSLCRSAGE 1110
>LOC_Os03g25760:12003.t02272:unspliced-genomic calmodulin binding protein, putative, expressed| Length = 3000 Score = 30.9 bits (61), Expect = 7.8 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -3 / -3 Query: 474 ISILKCLKSQYMFDKFLPLQAKVQWTPAREYCLVHF 367 +SIL ++Q+M F+ + VQWT ++Y + F Sbjct: 1903 VSILSATRTQHMTQFFVKDEQVVQWTDYKQYIPLRF 1796
>LOC_Os02g57050:12002.t05277:unspliced-genomic diphthamide biosynthesis protein 1, putative, expressed| Length = 2447 Score = 30.9 bits (61), Expect = 7.8 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 / -1 Query: 267 ASCTECGNHIHGTGSHPL 214 +SC+ C NH+H S+PL Sbjct: 1403 SSCSSCSNHLHPESSNPL 1350
>LOC_Os02g53230:12002.t04902:unspliced-genomic transcription elongation factor SPT5 homolog 1, putative, expressed| Length = 6806 Score = 30.9 bits (61), Expect = 7.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 / +1 Query: 126 YSFPSPMDPQQPEPVSYLCGDCGAENTL 209 Y P M QP Y+CGD A NTL Sbjct: 2170 YKLPRFMFTFQPNMPCYICGDASAVNTL 2253
>LOC_Os01g59230:12001.t05313:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 11068 Score = 30.9 bits (61), Expect = 7.8 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 / -2 Query: 423 VKTCQTCIEILDI*GLRLCIFGSWISKMVIIAV 521 +K+ C EIL I L L + WIS ++I+ + Sbjct: 5532 LKSFSVCAEILSIRSLSLLLIARWISTVLILPI 5434
>LOC_Os02g46320:12002.t04219:unspliced-genomic dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase,| putative, expressed Length = 3551 Score = 29.9 bits (59), Expect(2) = 8.9 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +3 / +1 Query: 360 QWRNVLDSTHAQVSIGLWLEVVKTCQTCI 446 QWR+ + H + LW +V C TCI Sbjct: 2371 QWRSSVLHFHLRKICSLWRHIVTYCLTCI 2457 Score = 21.7 bits (41), Expect(2) = 8.9 Identities = 9/13 (69%), Positives = 9/13 (69%) Frame = +2 / +2 Query: 65 SRRIGFCPPSSPS 103 SRR PPSSPS Sbjct: 236 SRRPSSTPPSSPS 274 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 245,927,883 Number of extensions: 4038406 Number of successful extensions: 15126 Number of sequences better than 10.0: 23 Length of query: 190 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 142 Effective length of database: 52,912,542 Effective search space: 7513580964 Effective search space used: 7513580964 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
