>P48011:RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 63
 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 29/51 (56%), Positives = 42/51 (82%)
 Frame = +3

Query: 147 DPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 299
           +P +P  + YLC DCGA NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 13  NPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63

>Q63871:RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC4 - Mus|
           musculus (Mouse)
          Length = 58

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 28/52 (53%), Positives = 42/52 (80%)
 Frame = +3

Query: 144 MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 299
           + P + +P+ Y+CG+C  EN +K+ D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 7   VQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

>P53803:RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC4 - Homo|
           sapiens (Human)
          Length = 58

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 28/52 (53%), Positives = 42/52 (80%)
 Frame = +3

Query: 144 MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 299
           + P + +P+ Y+CG+C  EN +K+ D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 7   VQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

>Q3ZBC0:RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC4 - Bos|
           taurus (Bovine)
          Length = 58

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 28/52 (53%), Positives = 42/52 (80%)
 Frame = +3

Query: 144 MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 299
           + P + +P+ Y+CG+C  EN +K+ D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 7   VQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

>P40422:RPAB4_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC4 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 70

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 20/44 (45%), Positives = 34/44 (77%)
 Frame = +3

Query: 168 VSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 299
           + Y+C +C ++ +L   D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 27  LKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70

>O30180:RPOP_ARCFU DNA-directed RNA polymerase subunit P - Archaeoglobus fulgidus|
          Length = 46

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 168 VSYLCGDCGAENTLKTG-DVIQCRECGYRILYKKR 269
           +SY+C  CGAE  + T   ++QC  CG RIL K R
Sbjct: 1   MSYVCLICGAEVDIDTEKSLVQCTNCGGRILIKPR 35

>Q4JAE8:RPOP_SULAC DNA-directed RNA polymerase subunit P - Sulfolobus acidocaldarius|
          Length = 48

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +3

Query: 174 YLCGDCGAE---NTLKTGDVIQCRECGYRILY--KKRTRRIVQ 287
           Y CG C  E   + LKT   ++C  CGYRI+Y  +K T +IV+
Sbjct: 4   YRCGKCWKELDDDQLKTLPGVRCPYCGYRIIYMVRKPTVKIVK 46

>Q8TYC4:RPOP_METKA DNA-directed RNA polymerase subunit P - Methanopyrus kandleri|
          Length = 51

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 156 QPEPVSYLCGDCGAENTLKTG-DVIQCRECGYRILYKKRTRRIVQYEAR 299
           + E   Y+C  CG +  L    D I+C  CG+R++ K R     +Y+AR
Sbjct: 3   EEEKYEYICMRCGKKVRLDINEDPIRCTHCGFRLVMKPRHPVPRRYKAR 51

>Q5JDM8:RPOP_PYRKO DNA-directed RNA polymerase subunit P - Pyrococcus kodakaraensis|
           (Thermococcus kodakaraensis)
          Length = 49

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 174 YLCGDCG--AENTLKTGDVIQCRECGYRILYKKRTR 275
           Y C  CG   E  L T   ++C  CG +ILYK R R
Sbjct: 6   YRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPR 41

>Q9HSG9:RPOP_HALSA DNA-directed RNA polymerase subunit P - Halobacterium salinarium|
           (Halobacterium halobium)
          Length = 44

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 168 VSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRI 281
           +SY C  C  +  L     ++C  CG+R+L K+R+R +
Sbjct: 1   MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDV 38

>Q5V1M2:RPOP_HALMA DNA-directed RNA polymerase subunit P - Haloarcula marismortui|
           (Halobacterium marismortui)
          Length = 44

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 VSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRT 272
           +SY C  C  + TL     ++C  CG+R+L K+R+
Sbjct: 1   MSYKCSRCKRDVTLDEYGGVRCPYCGHRVLLKERS 35

>O74105:RPOP_PYRHO DNA-directed RNA polymerase subunit P - Pyrococcus horikoshii|
          Length = 49

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 159 PEPVSYLCGDCGAENTL--KTGDVIQCRECGYRILYKKRTR 275
           PE V Y C  CG E  L   T   ++C  CG +ILYK R +
Sbjct: 2   PEAV-YRCAKCGREVKLDLSTTRDLRCPYCGSKILYKPRPK 41

>Q8ZTH0:RL40_PYRAE 50S ribosomal protein L40e - Pyrobaculum aerophilum|
          Length = 53

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 177 LCGDCGAENTLKTGDVIQCRECGYRILYKKRTRR 278
           +C +CGA+N     D ++CR C  R L  KR R+
Sbjct: 22  ICRECGAKNP---PDAVKCRRCRSRNLRPKRFRK 52

>Q10990:CDT2_SCHPO Cell division cycle protein cdt2 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 490

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 170 QLSVRRLRS*EHTQDRGCDPVP*MWLPHSVQEAHSSDCSI*SSLKTKE-ETSFTVKCVP* 346
           Q  V R+R       R C      WLP S  +  SS CS  S+LK  +  T  TV+ +P 
Sbjct: 271 QKPVLRIRKAHENSGRDCSITSATWLPQSTSQVISS-CSANSALKLWDLRTVHTVRPLP- 328

Query: 347 DKATTMEKCT 376
             ATT E  T
Sbjct: 329 -AATTPELTT 337

>P18730:ZG58_XENLA Gastrula zinc finger protein XLCGF58.1 - Xenopus laevis (African|
           clawed frog)
          Length = 420

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 18/60 (30%)
 Frame = -3

Query: 303 FSELHIEQSDECASCTECGN-----------HIHGTGSHPLS*VCSQ-------LRNLRT 178
           +  LH+   D+  SCTECGN           H+  TG  P   VC++       L NLR+
Sbjct: 134 YQHLHLHTGDKPFSCTECGNCFATKVQLQRHHLLHTGEKPF--VCTECNLSFAGLANLRS 191

>Q975R9:RPOP_SULTO DNA-directed RNA polymerase subunit P - Sulfolobus tokodaii|
          Length = 48

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 174 YLCGDCGAE---NTLKTGDVIQCRECGYRILY--KKRTRRIVQ 287
           Y CG+C  E     L+    ++C  CGY+I+Y  +K T ++V+
Sbjct: 4   YRCGNCWREFDDEQLRALPGVRCPYCGYKIIYMVRKPTVKVVK 46


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 103,261,594
Number of extensions: 2247966
Number of successful extensions: 5337
Number of sequences better than 10.0: 16
Number of HSP's gapped: 5332
Number of HSP's successfully gapped: 16
Length of query: 190
Length of database: 100,686,439
Length adjustment: 107
Effective length of query: 83
Effective length of database: 71,336,874
Effective search space: 5920960542
Effective search space used: 5920960542
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)