ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf46p01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL512598.11| Human DNA sequence from clone RP11-165A20 on ch... 50 0.018
2gb|AC187730.2| Pan troglodytes BAC clone CH251-379I18 from chrom... 44 1.1
3gb|AC145508.3| Dasypus novemcinctus clone VMRC5-464O17, complete... 44 1.1
4gb|AC148003.2| Mus musculus BAC clone RP23-413H13 from chromosom... 44 1.1
5gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome... 44 1.1
6gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, comple... 44 1.1
7gb|AC102422.10| Mus musculus chromosome 18, clone RP24-572G3, co... 44 1.1
8ref|XM_724642.1| Plasmodium yoelii yoelii str. 17XNL chromosome ... 44 1.1
9gb|CP000446.1| Shewanella sp. MR-4, complete genome 42 4.5
10gb|AC009208.7| Drosophila melanogaster clone BACR31I21, complete... 42 4.5
11gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete s... 42 4.5
12gb|AC006675.2| Caenorhabditis elegans cosmid M02H5, complete seq... 42 4.5
13gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete... 42 4.5
14gb|AC140278.2| Mus musculus BAC clone RP24-313J18 from chromosom... 42 4.5
15ref|NM_001043486.1| Bombyx mori glycine rich protein (Grp2), mRN... 42 4.5
16gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Ho... 42 4.5
17gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 42 4.5
18ref|XM_751678.1| Ustilago maydis 521 hypothetical protein (UM006... 42 4.5
19emb|AL357654.9| Human DNA sequence from clone RP5-1025P18 on chr... 42 4.5
20emb|AL353600.10| Human DNA sequence from clone RP11-90B22 on chr... 42 4.5
21emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 42 4.5
22gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-72... 42 4.5
23emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 42 4.5
24ref|XM_668564.1| Plasmodium berghei strain ANKA ATP-dependent he... 42 4.5
25ref|XM_718956.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 4.5
26emb|CT009579.20| Mouse DNA sequence from clone CH29-133M20 on ch... 42 4.5
27emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chr... 42 4.5
28dbj|AP001094.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 4.5

>emb|AL512598.11| Human DNA sequence from clone RP11-165A20 on chromosome 10 Contains the
             5' end of the gene for HHGP protein (HHGP) (FLJ11888), the
             gene for a novel protein similar to secreted
             frizzled-related protein 4 SFRP4 (FLJ37702), the gene for
             a novel protein similar to threonine synthase, containing
             FLJ2202 and  FLJ37043 and two CpG islands, complete
             sequence
          Length = 139491
 Score = 50.1 bits (25), Expect = 0.018
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 727   aagaattagtggaagttggaaaaag 751
             |||||||||||||||||||||||||
Sbjct: 39711 aagaattagtggaagttggaaaaag 39687



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>gb|AC187730.2| Pan troglodytes BAC clone CH251-379I18 from chromosome 7, complete
             sequence
          Length = 146113

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 940   tttgtttgcattctagatttaatttt 965
             |||||||||||| |||||||||||||
Sbjct: 77106 tttgtttgcattttagatttaatttt 77081



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>gb|AC145508.3| Dasypus novemcinctus clone VMRC5-464O17, complete sequence
          Length = 169201

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 123    tgttctttgtctgcttgtattc 144
              ||||||||||||||||||||||
Sbjct: 116394 tgttctttgtctgcttgtattc 116373



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>gb|AC148003.2| Mus musculus BAC clone RP23-413H13 from chromosome 18, complete sequence
          Length = 205418

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1066   gaactactttactgctgctctg 1087
              ||||||||||||||||||||||
Sbjct: 183817 gaactactttactgctgctctg 183796



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>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence
          Length = 213381

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1066  gaactactttactgctgctctg 1087
             ||||||||||||||||||||||
Sbjct: 66249 gaactactttactgctgctctg 66228



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>gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, complete sequence
          Length = 182038

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 940  tttgtttgcattctagatttaatttt 965
            |||||||||||| |||||||||||||
Sbjct: 3975 tttgtttgcattttagatttaatttt 3950



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>gb|AC102422.10| Mus musculus chromosome 18, clone RP24-572G3, complete sequence
          Length = 173218

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1080  ctgctctgtttttctcttgtgg 1101
             ||||||||||||||||||||||
Sbjct: 73028 ctgctctgtttttctcttgtgg 73007



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>ref|XM_724642.1| Plasmodium yoelii yoelii str. 17XNL chromosome condensation regulator
            leucine aminopeptidase (PY01898) partial mRNA
          Length = 1926

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 944  tttgcattctagatttaatttt 965
            ||||||||||||||||||||||
Sbjct: 1086 tttgcattctagatttaatttt 1065



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>gb|CP000446.1| Shewanella sp. MR-4, complete genome
          Length = 4706287

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 632     gcggcgaaaaacaacgggttg 652
               |||||||||||||||||||||
Sbjct: 3818826 gcggcgaaaaacaacgggttg 3818846



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>gb|AC009208.7| Drosophila melanogaster clone BACR31I21, complete sequence
          Length = 148349

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   atcctttatattattattatc 388
             |||||||||||||||||||||
Sbjct: 26500 atcctttatattattattatc 26480



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>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence
          Length = 21146708

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 368     atcctttatattattattatc 388
               |||||||||||||||||||||
Sbjct: 6425085 atcctttatattattattatc 6425065



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>gb|AC006675.2| Caenorhabditis elegans cosmid M02H5, complete sequence
          Length = 35420

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 922   aaaatcggaggtgcttgtttt 942
             |||||||||||||||||||||
Sbjct: 23336 aaaatcggaggtgcttgtttt 23356



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>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence
          Length = 179325

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   atcctttatattattattatc 388
             |||||||||||||||||||||
Sbjct: 94321 atcctttatattattattatc 94301



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>gb|AC140278.2| Mus musculus BAC clone RP24-313J18 from chromosome 17, complete sequence
          Length = 180727

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1111   gtgtattcaagtgctggttactgtg 1135
              |||||||||| ||||||||||||||
Sbjct: 115813 gtgtattcaaatgctggttactgtg 115837



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>ref|NM_001043486.1| Bombyx mori glycine rich protein (Grp2), mRNA
 dbj|AB197877.1| Bombyx mori BmGRP2 mRNA for glycine rich protein, complete cds
          Length = 1209

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 206 ccggtggattctcctcgtctg 226
           |||||||||||||||||||||
Sbjct: 274 ccggtggattctcctcgtctg 294



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>gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 213440

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   cctttccgctgttctttgtctgctt 138
             ||||||| |||||||||||||||||
Sbjct: 89957 cctttcctctgttctttgtctgctt 89933



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>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete
             sequence
          Length = 123340

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 891   tattttggtgtttcatttcaa 911
             |||||||||||||||||||||
Sbjct: 56703 tattttggtgtttcatttcaa 56683



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>ref|XM_751678.1| Ustilago maydis 521 hypothetical protein (UM00624.1) partial mRNA
          Length = 837

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 121 gctgttctttgtctgcttgta 141
           |||||||||||||||||||||
Sbjct: 549 gctgttctttgtctgcttgta 569



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>emb|AL357654.9| Human DNA sequence from clone RP5-1025P18 on chromosome 20 Contains
            part of the gene for a novel protein (LOC284776),
            complete sequence
          Length = 22651

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 497  gtttcatttctgtttgttatg 517
            |||||||||||||||||||||
Sbjct: 2758 gtttcatttctgtttgttatg 2738



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>emb|AL353600.10| Human DNA sequence from clone RP11-90B22 on chromosome 10 Contains the
             5' end of the NRP1 gene for neuropilin 1, a novel gene and
             a CpG island, complete sequence
          Length = 124540

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 657   cagttcacagtcaaaattcag 677
             |||||||||||||||||||||
Sbjct: 34342 cagttcacagtcaaaattcag 34362



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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 367    tatcctttatattattattat 387
              |||||||||||||||||||||
Sbjct: 595920 tatcctttatattattattat 595900



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>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence
          Length = 182495

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 953    tagatttaattttcctgggag 973
              |||||||||||||||||||||
Sbjct: 161787 tagatttaattttcctgggag 161807



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>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 369    tcctttatattattattatca 389
              |||||||||||||||||||||
Sbjct: 131317 tcctttatattattattatca 131337



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>ref|XM_668564.1| Plasmodium berghei strain ANKA ATP-dependent helicase
           (PB001258.00.0) partial mRNA
          Length = 1575

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 821 gattgtgctatattaccatgt 841
           |||||||||||||||||||||
Sbjct: 938 gattgtgctatattaccatgt 918



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>ref|XM_718956.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03841)
            partial mRNA
          Length = 1908

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 821  gattgtgctatattaccatgt 841
            |||||||||||||||||||||
Sbjct: 1256 gattgtgctatattaccatgt 1236



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>emb|CT009579.20| Mouse DNA sequence from clone CH29-133M20 on chromosome 17, complete
             sequence
          Length = 219682

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1111  gtgtattcaagtgctggttactgtg 1135
             |||||||||| ||||||||||||||
Sbjct: 27253 gtgtattcaaatgctggttactgtg 27229



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>emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chromosome 15, complete
              sequence
          Length = 178412

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 376    tattattattatcatggtcgtgatg 400
              |||||||||||||||||| ||||||
Sbjct: 165689 tattattattatcatggtagtgatg 165665



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>dbj|AP001094.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-789C17, complete
              sequences
          Length = 181310

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 492    gtttggtttcatttctgtttg 512
              |||||||||||||||||||||
Sbjct: 132499 gtttggtttcatttctgtttg 132479


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 221,631,574
Number of extensions: 13974115
Number of successful extensions: 282870
Number of sequences better than 10.0: 28
Number of HSP's gapped: 282870
Number of HSP's successfully gapped: 28
Length of query: 1175
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1152
Effective length of database: 18,503,978,556
Effective search space: 21316583296512
Effective search space used: 21316583296512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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