| Clone Name | FLbaf46p01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL512598.11| Human DNA sequence from clone RP11-165A20 on chromosome 10 Contains the 5' end of the gene for HHGP protein (HHGP) (FLJ11888), the gene for a novel protein similar to secreted frizzled-related protein 4 SFRP4 (FLJ37702), the gene for a novel protein similar to threonine synthase, containing FLJ2202 and FLJ37043 and two CpG islands, complete sequence Length = 139491 Score = 50.1 bits (25), Expect = 0.018 Identities = 25/25 (100%) Strand = Plus / Minus Query: 727 aagaattagtggaagttggaaaaag 751 ||||||||||||||||||||||||| Sbjct: 39711 aagaattagtggaagttggaaaaag 39687
>gb|AC187730.2| Pan troglodytes BAC clone CH251-379I18 from chromosome 7, complete sequence Length = 146113 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 940 tttgtttgcattctagatttaatttt 965 |||||||||||| ||||||||||||| Sbjct: 77106 tttgtttgcattttagatttaatttt 77081
>gb|AC145508.3| Dasypus novemcinctus clone VMRC5-464O17, complete sequence Length = 169201 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 tgttctttgtctgcttgtattc 144 |||||||||||||||||||||| Sbjct: 116394 tgttctttgtctgcttgtattc 116373
>gb|AC148003.2| Mus musculus BAC clone RP23-413H13 from chromosome 18, complete sequence Length = 205418 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1066 gaactactttactgctgctctg 1087 |||||||||||||||||||||| Sbjct: 183817 gaactactttactgctgctctg 183796
>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence Length = 213381 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1066 gaactactttactgctgctctg 1087 |||||||||||||||||||||| Sbjct: 66249 gaactactttactgctgctctg 66228
>gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, complete sequence Length = 182038 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 940 tttgtttgcattctagatttaatttt 965 |||||||||||| ||||||||||||| Sbjct: 3975 tttgtttgcattttagatttaatttt 3950
>gb|AC102422.10| Mus musculus chromosome 18, clone RP24-572G3, complete sequence Length = 173218 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1080 ctgctctgtttttctcttgtgg 1101 |||||||||||||||||||||| Sbjct: 73028 ctgctctgtttttctcttgtgg 73007
>ref|XM_724642.1| Plasmodium yoelii yoelii str. 17XNL chromosome condensation regulator leucine aminopeptidase (PY01898) partial mRNA Length = 1926 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 944 tttgcattctagatttaatttt 965 |||||||||||||||||||||| Sbjct: 1086 tttgcattctagatttaatttt 1065
>gb|CP000446.1| Shewanella sp. MR-4, complete genome Length = 4706287 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 632 gcggcgaaaaacaacgggttg 652 ||||||||||||||||||||| Sbjct: 3818826 gcggcgaaaaacaacgggttg 3818846
>gb|AC009208.7| Drosophila melanogaster clone BACR31I21, complete sequence Length = 148349 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 atcctttatattattattatc 388 ||||||||||||||||||||| Sbjct: 26500 atcctttatattattattatc 26480
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 atcctttatattattattatc 388 ||||||||||||||||||||| Sbjct: 6425085 atcctttatattattattatc 6425065
>gb|AC006675.2| Caenorhabditis elegans cosmid M02H5, complete sequence Length = 35420 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 922 aaaatcggaggtgcttgtttt 942 ||||||||||||||||||||| Sbjct: 23336 aaaatcggaggtgcttgtttt 23356
>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence Length = 179325 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 atcctttatattattattatc 388 ||||||||||||||||||||| Sbjct: 94321 atcctttatattattattatc 94301
>gb|AC140278.2| Mus musculus BAC clone RP24-313J18 from chromosome 17, complete sequence Length = 180727 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1111 gtgtattcaagtgctggttactgtg 1135 |||||||||| |||||||||||||| Sbjct: 115813 gtgtattcaaatgctggttactgtg 115837
>ref|NM_001043486.1| Bombyx mori glycine rich protein (Grp2), mRNA dbj|AB197877.1| Bombyx mori BmGRP2 mRNA for glycine rich protein, complete cds Length = 1209 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 ccggtggattctcctcgtctg 226 ||||||||||||||||||||| Sbjct: 274 ccggtggattctcctcgtctg 294
>gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Hospital Oakland Research Institute) complete sequence Length = 213440 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 114 cctttccgctgttctttgtctgctt 138 ||||||| ||||||||||||||||| Sbjct: 89957 cctttcctctgttctttgtctgctt 89933
>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete sequence Length = 123340 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 891 tattttggtgtttcatttcaa 911 ||||||||||||||||||||| Sbjct: 56703 tattttggtgtttcatttcaa 56683
>ref|XM_751678.1| Ustilago maydis 521 hypothetical protein (UM00624.1) partial mRNA Length = 837 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gctgttctttgtctgcttgta 141 ||||||||||||||||||||| Sbjct: 549 gctgttctttgtctgcttgta 569
>emb|AL357654.9| Human DNA sequence from clone RP5-1025P18 on chromosome 20 Contains part of the gene for a novel protein (LOC284776), complete sequence Length = 22651 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 497 gtttcatttctgtttgttatg 517 ||||||||||||||||||||| Sbjct: 2758 gtttcatttctgtttgttatg 2738
>emb|AL353600.10| Human DNA sequence from clone RP11-90B22 on chromosome 10 Contains the 5' end of the NRP1 gene for neuropilin 1, a novel gene and a CpG island, complete sequence Length = 124540 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 cagttcacagtcaaaattcag 677 ||||||||||||||||||||| Sbjct: 34342 cagttcacagtcaaaattcag 34362
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tatcctttatattattattat 387 ||||||||||||||||||||| Sbjct: 595920 tatcctttatattattattat 595900
>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence Length = 182495 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 953 tagatttaattttcctgggag 973 ||||||||||||||||||||| Sbjct: 161787 tagatttaattttcctgggag 161807
>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 Length = 347582 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 tcctttatattattattatca 389 ||||||||||||||||||||| Sbjct: 131317 tcctttatattattattatca 131337
>ref|XM_668564.1| Plasmodium berghei strain ANKA ATP-dependent helicase (PB001258.00.0) partial mRNA Length = 1575 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 821 gattgtgctatattaccatgt 841 ||||||||||||||||||||| Sbjct: 938 gattgtgctatattaccatgt 918
>ref|XM_718956.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03841) partial mRNA Length = 1908 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 821 gattgtgctatattaccatgt 841 ||||||||||||||||||||| Sbjct: 1256 gattgtgctatattaccatgt 1236
>emb|CT009579.20| Mouse DNA sequence from clone CH29-133M20 on chromosome 17, complete sequence Length = 219682 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1111 gtgtattcaagtgctggttactgtg 1135 |||||||||| |||||||||||||| Sbjct: 27253 gtgtattcaaatgctggttactgtg 27229
>emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chromosome 15, complete sequence Length = 178412 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 tattattattatcatggtcgtgatg 400 |||||||||||||||||| |||||| Sbjct: 165689 tattattattatcatggtagtgatg 165665
>dbj|AP001094.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-789C17, complete sequences Length = 181310 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 gtttggtttcatttctgtttg 512 ||||||||||||||||||||| Sbjct: 132499 gtttggtttcatttctgtttg 132479 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 221,631,574 Number of extensions: 13974115 Number of successful extensions: 282870 Number of sequences better than 10.0: 28 Number of HSP's gapped: 282870 Number of HSP's successfully gapped: 28 Length of query: 1175 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1152 Effective length of database: 18,503,978,556 Effective search space: 21316583296512 Effective search space used: 21316583296512 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)