ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf40m17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106965.1| Zea mays PCO085091 mRNA sequence Length = 928 Score = 170 bits (86), Expect = 7e-39 Identities = 378/472 (80%), Gaps = 5/472 (1%) Strand = Plus / Plus Query: 168 tgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctcc 227 |||||||| || |||||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct: 178 tgctgcctcggcttcctgctcaagctgctcgcgttcctccaggccttcgccgccgtctcc 237 Query: 228 gccgtcctctacgccgcctccatcctctcccgctggtcgcgacaacacgagctgcgctt- 286 ||| || |||||||||| | ||||||||||||||| |||| || ||| |||| | | | Sbjct: 238 gccctcatctacgccgcttggatcctctcccgctgggcgcgccaccaccagctccacctc 297 Query: 287 --cgaccatctcctcccggacctctggttcgcgtgcgc-cgtcatggccgccggcctcct 343 ||||| ||| ||||||||| |||||| ||| ||| ||||||||| || || || | Sbjct: 298 cgcgaccttctaagcccggacctatggttcccgt-cgctcgtcatggcggcggggatctt 356 Query: 344 ctactgcgccatcctcctcgcgggctacgtcgccgccgaggtcaacagcgggtgctgcct 403 ||||||| | | ||||||||||| ||| | || || ||| |||||| ||| |||||||| Sbjct: 357 ctactgcctcctgctcctcgcgggttacttggcagctgagatcaacaccggatgctgcct 416 Query: 404 ctgcttctataccatcttggccatgacgatgatgctgctggaagctgccgtggccggcca 463 ||||||||| |||||| |||||| | |||||||||||||||||||| | |||| ||| Sbjct: 417 ctgcttctacaccatcccagccatggctatgatgctgctggaagctgctctcgccgccca 476 Query: 464 actcctcctcaacgagcactggatccaggatctgccgtatgaccgcaccggagagctcga 523 || |||||| |||||||||||||||| ||||| | ||||||||||| |||||| | Sbjct: 477 tctggcgctcaaccagcactggatccaggaactgccagaggaccgcaccggcgagctcca 536 Query: 524 gagcctcgtctcctttgtcaagaacaacctcgacctctgtaaatgggctgctgtcgctac 583 | | | ||||||| || | || || |||||||| || ||||||| |||| | || | Sbjct: 537 caacttactctccttcatccacaataatctcgacctatgcaaatgggttgctcttgccat 596 Query: 584 cgtcgccacgcaggcgttctcacttttcttggcaatgactctacgagccatg 635 | |||||| |||||| |||||||| || |||| |||||| |||| |||||| Sbjct: 597 cttcgccatgcaggcactctcacttctcctggctatgactttacgggccatg 648
>ref|NM_001065199.1| Oryza sativa (japonica cultivar-group) Os06g0731400 (Os06g0731400) mRNA, complete cds Length = 1133 Score = 147 bits (74), Expect = 1e-31 Identities = 212/258 (82%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 120 ctgctgcctggccttcctcttcaagttcctcgccttcctccaggccttcgccgctgtctc 179 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcgacaacacgagctgcgctt 286 |||| | ||||||||||| | ||||||||||| ||| |||| || ||| | || | | | Sbjct: 180 cgccctactctacgccgcatggatcctctcccgttgggcgcgccaccaccatctccacct 239 Query: 287 cgaccatctcctcccggacctctggttcgcgtgcgccgtcatggccgccggcctcctcta 346 | | | || ||||| ||||||||||||| |||||| ||||||| ||||||||| |||| Sbjct: 240 ccaagacctactccccgacctctggttcgtctgcgccctcatggctgccggcctcttcta 299 Query: 347 ctgcgccatcctcctcgcgggctacgtcgccgccgaggtcaacagcgggtgctgcctctg 406 |||| | |||||||| || | ||| || |||||| |||||||| |||| |||||| Sbjct: 300 ctgcctgcttctcctcgccggatgcgttgctgccgagatcaacagcccctgcttcctctg 359 Query: 407 cttctataccatcttggc 424 |||||| ||||||||||| Sbjct: 360 cttctacaccatcttggc 377 Score = 139 bits (70), Expect = 2e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 607 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 666 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || | |||||||||| Sbjct: 667 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccagacctatggagc 726 Query: 774 tcatcgatgaggcaaaagtatggattgaactccacaagcgactacacctacaacacactg 833 ||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 727 tcaagaatgagacacaagtatggattgaact---caagcaactacacctacaacacactg 783 Query: 834 gatcaaaatgca 845 |||| ||||||| Sbjct: 784 gatccaaatgca 795 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 480 cactggatccaggatctgccgtatgaccgcaccggagagctcga 523 ||||||||||||||| |||| ||||||||||| ||||| ||||| Sbjct: 433 cactggatccaggatttgccatatgaccgcactggagaactcga 476
>dbj|AK098979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C17, full insert sequence Length = 1120 Score = 147 bits (74), Expect = 1e-31 Identities = 163/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 608 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 667 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || |||||||||||| Sbjct: 668 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccaggcctatggagc 727 Query: 774 tcatcgatgaggcaaaagtatggattgaactccacaagcgactacacctacaacacactg 833 ||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 728 tcaagaatgagacacaagtatggattgaact---caagcaactacacctacaacacactg 784 Query: 834 gatcaaaatgca 845 |||| ||||||| Sbjct: 785 gatccaaatgca 796 Score = 139 bits (70), Expect = 2e-29 Identities = 211/258 (81%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 121 ctgctgcctggccttcctcttcaagttcctcgccttcctccaggccttcgccgctgtctc 180 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcgacaacacgagctgcgctt 286 |||| | |||||||| || | ||||||||||| ||| |||| || ||| | || | | | Sbjct: 181 cgccctactctacgctgcatggatcctctcccgttgggcgcgccaccaccatctccacct 240 Query: 287 cgaccatctcctcccggacctctggttcgcgtgcgccgtcatggccgccggcctcctcta 346 | | | || ||||| ||||||||||||| |||||| ||||||| ||||||||| |||| Sbjct: 241 ccaagacctactccccgacctctggttcgtctgcgccctcatggctgccggcctcttcta 300 Query: 347 ctgcgccatcctcctcgcgggctacgtcgccgccgaggtcaacagcgggtgctgcctctg 406 |||| | |||||||| || | ||| || |||||| |||||||| |||| |||||| Sbjct: 301 ctgcctgcttctcctcgccggatgcgttgctgccgagatcaacagcccctgcttcctctg 360 Query: 407 cttctataccatcttggc 424 |||||| ||||||||||| Sbjct: 361 cttctacaccatcttggc 378 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 480 cactggatccaggatctgccgtatgaccgcaccggagagctcga 523 ||||||||||||||| |||| ||||||||||| ||||| ||||| Sbjct: 434 cactggatccaggatttgccatatgaccgcactggagaactcga 477
>emb|CT832972.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108G22, full insert sequence Length = 1076 Score = 139 bits (70), Expect = 2e-29 Identities = 211/258 (81%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 198 ctgctgcctggccttcctcttcaagttcctctccttcctccaggccttcgccgctgtctc 257 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcgacaacacgagctgcgctt 286 |||| | ||||||||||| | ||||||||||| ||| |||| || ||| | || | | | Sbjct: 258 cgccctactctacgccgcatggatcctctcccgttgggcgcgccaccaccatctccacct 317 Query: 287 cgaccatctcctcccggacctctggttcgcgtgcgccgtcatggccgccggcctcctcta 346 | | | || ||||| ||||||||||||| |||||| ||||||| ||||||||| |||| Sbjct: 318 ccaagacctactccccgacctctggttcgtctgcgccctcatggctgccggcctcttcta 377 Query: 347 ctgcgccatcctcctcgcgggctacgtcgccgccgaggtcaacagcgggtgctgcctctg 406 |||| | |||||||| || | ||| || |||||| |||||||| |||| |||||| Sbjct: 378 ctgcctgcttctcctcgccggatgcgttgctgccgagatcaacagcccctgcttcctctg 437 Query: 407 cttctataccatcttggc 424 |||||| ||||||||||| Sbjct: 438 cttctacaccatcttggc 455 Score = 139 bits (70), Expect = 2e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 685 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 744 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || | |||||||||| Sbjct: 745 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccagacctatggagc 804 Query: 774 tcatcgatgaggcaaaagtatggattgaactccacaagcgactacacctacaacacactg 833 ||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 805 tcaagaatgagacacaagtatggattgaact---caagcaactacacctacaacacactg 861 Query: 834 gatcaaaatgca 845 |||| ||||||| Sbjct: 862 gatccaaatgca 873 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 480 cactggatccaggatctgccgtatgaccgcaccggagagctcga 523 ||||||||||||||| |||| ||||||||||| ||||| ||||| Sbjct: 511 cactggatccaggatttgccatatgaccgcactggagaactcga 554
>dbj|AK120175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033B05, full insert sequence Length = 1693 Score = 139 bits (70), Expect = 2e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 736 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 795 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || | |||||||||| Sbjct: 796 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccagacctatggagc 855 Query: 774 tcatcgatgaggcaaaagtatggattgaactccacaagcgactacacctacaacacactg 833 ||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 856 tcaagaatgagacacaagtatggattgaact---caagcaactacacctacaacacactg 912 Query: 834 gatcaaaatgca 845 |||| ||||||| Sbjct: 913 gatccaaatgca 924 Score = 127 bits (64), Expect = 9e-26 Identities = 154/184 (83%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 128 ctgctgcctggccttcctcttcaagttcctcgccttcctccaggccttcgccgctgtctc 187 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcgacaacacgagctgcgctt 286 |||| | ||||||||||| | ||||||||||| ||| |||| || ||| | || | | | Sbjct: 188 cgccctactctacgccgcatggatcctctcccgttgggcgcgccaccaccatctccacct 247 Query: 287 cgaccatctcctcccggacctctggttcgcgtgcgccgtcatggccgccggcctcctcta 346 | | | || ||||| ||||||||||||| |||||| ||||||| ||||||||| |||| Sbjct: 248 ccaagacctactccccgacctctggttcgtctgcgccctcatggctgccggcctcttcta 307 Query: 347 ctgc 350 |||| Sbjct: 308 ctgc 311 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 480 cactggatccaggatctgccgtatgaccgcaccggagagctcga 523 ||||||||||||||| |||| ||||||||||| ||||| ||||| Sbjct: 562 cactggatccaggatttgccatatgaccgcactggagaactcga 605
>dbj|AK065285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M13, full insert sequence Length = 1136 Score = 139 bits (70), Expect = 2e-29 Identities = 211/258 (81%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 121 ctgctgcctggccttcctcttcaagttcctcgccttcctccaggccttcgccgctgtctc 180 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcgacaacacgagctgcgctt 286 |||| | ||||||||||| | ||||||||||| ||| | || || ||| | || | | | Sbjct: 181 cgccctactctacgccgcatggatcctctcccgttgggcacgccaccaccatctccacct 240 Query: 287 cgaccatctcctcccggacctctggttcgcgtgcgccgtcatggccgccggcctcctcta 346 | | | || ||||| ||||||||||||| |||||| ||||||| ||||||||| |||| Sbjct: 241 ccaagacctactccccgacctctggttcgtctgcgccctcatggctgccggcctcttcta 300 Query: 347 ctgcgccatcctcctcgcgggctacgtcgccgccgaggtcaacagcgggtgctgcctctg 406 |||| | |||||||| || | ||| || |||||| |||||||| |||| |||||| Sbjct: 301 ctgcctgcttctcctcgccggatgcgttgctgccgagatcaacagcccctgcttcctctg 360 Query: 407 cttctataccatcttggc 424 |||||| ||||||||||| Sbjct: 361 cttctacaccatcttggc 378 Score = 139 bits (70), Expect = 2e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 608 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 667 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || | |||||||||| Sbjct: 668 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccagacctatggagc 727 Query: 774 tcatcgatgaggcaaaagtatggattgaactccacaagcgactacacctacaacacactg 833 ||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 728 tcaagaatgagacacaagtatggattgaact---caagcaactacacctacaacacactg 784 Query: 834 gatcaaaatgca 845 |||| ||||||| Sbjct: 785 gatccaaatgca 796 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 480 cactggatccaggatctgccgtatgaccgcaccggagagctcga 523 ||||||||||||||| |||| ||||||||||| ||||| ||||| Sbjct: 434 cactggatccaggatttgccatatgaccgcactggagaactcga 477
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 107 bits (54), Expect = 9e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 30665895 ctgctgcctggccttcctcttcaagttcctcgccttcctccaggccttcgccgctgtctc 30665954 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcg 268 |||| | ||||||||||| | ||||||||||| ||| |||| Sbjct: 30665955 cgccctactctacgccgcatggatcctctcccgttgggcgcg 30665996 Score = 85.7 bits (43), Expect = 3e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 30666779 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 30666838 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || | |||||||||| Sbjct: 30666839 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccagacctatggagc 30666898 Query: 774 tca 776 ||| Sbjct: 30666899 tca 30666901 Score = 67.9 bits (34), Expect = 8e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 790 agtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 845 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct: 30668005 agtatggattgaactc---aagcaactacacctacaacacactggatccaaatgca 30668057
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1206D04 Length = 130176 Score = 107 bits (54), Expect = 9e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 167 ctgctgcctggggttcctgctcaagttcctcgccttcctccaggccttcgccgccgtctc 226 ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 68551 ctgctgcctggccttcctcttcaagttcctcgccttcctccaggccttcgccgctgtctc 68610 Query: 227 cgccgtcctctacgccgcctccatcctctcccgctggtcgcg 268 |||| | ||||||||||| | ||||||||||| ||| |||| Sbjct: 68611 cgccctactctacgccgcatggatcctctcccgttgggcgcg 68652 Score = 85.7 bits (43), Expect = 3e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 654 gactatgatagcgaagaagattttgtggtcataaggaggccgctgcttcttgcccaaggt 713 |||||||| || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 69435 gactatgacagtgatgaagattttgtggtcataaggaggccacttctggttgcccaaggt 69494 Query: 714 gctccagcctatatccctaccacggccgacccaagaggtgcccagcctggcctatggagc 773 ||||| || ||| | |||||||| ||||| | |||||| ||| || | |||||||||| Sbjct: 69495 gctcccgcttatcttcctaccaccgccgatactagaggtttccatccagacctatggagc 69554 Query: 774 tca 776 ||| Sbjct: 69555 tca 69557 Score = 67.9 bits (34), Expect = 8e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 790 agtatggattgaactccacaagcgactacacctacaacacactggatcaaaatgca 845 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct: 70661 agtatggattgaactc---aagcaactacacctacaacacactggatccaaatgca 70713
>emb|CT835321.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058D13, full insert sequence Length = 1253 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 92 caaatcccaaatccccaacccggcgacgatggcc 125 ||||||||||||||| ||||| ||| |||||||| Sbjct: 23 caaatcccaaatcccaaaccccgcggcgatggcc 56
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 215 cgccgccgtctccgccgtcctc 236 |||||||||||||||||||||| Sbjct: 1787594 cgccgccgtctccgccgtcctc 1787573
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 92 caaatcccaaatccccaacccggcgacgatggcc 125 ||||||||||||||| ||||| ||| |||||||| Sbjct: 27620837 caaatcccaaatcccaaaccccgcggcgatggcc 27620870 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 209 ggccttcgccgccgtctccgccgtc 233 |||| |||||||||||||||||||| Sbjct: 16248044 ggccgtcgccgccgtctccgccgtc 16248020
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 92 caaatcccaaatccccaacccggcgacgatggcc 125 ||||||||||||||| ||||| ||| |||||||| Sbjct: 100506 caaatcccaaatcccaaaccccgcggcgatggcc 100539
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 92 caaatcccaaatccccaacccggcgacgatggcc 125 ||||||||||||||| ||||| ||| |||||||| Sbjct: 6703 caaatcccaaatcccaaaccccgcggcgatggcc 6736
>gb|EF078692.1| Azoarcus anaerobius transposase gene, partial cds; putative ABC transporter substrate-binding protein, putative flavin-dependent dehydrogenase, hypothetical proteins, and putative glutathione S-transferase genes, complete cds; resorcinol degradation gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 29880 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 tcctccaggccttcgccgccg 222 ||||||||||||||||||||| Sbjct: 24970 tcctccaggccttcgccgccg 24990
>gb|AC152833.3| Ornithorhynchus anatinus BAC clone OABb-6A1 from chromosome unknown, complete sequence Length = 141309 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 ctactgcgccatcctcctcgc 364 ||||||||||||||||||||| Sbjct: 28958 ctactgcgccatcctcctcgc 28978
>gb|AC131761.4| Mus musculus BAC clone RP24-228J4 from chromosome 18, complete sequence Length = 167442 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 753 gcccagcctggcctatggagc 773 ||||||||||||||||||||| Sbjct: 158490 gcccagcctggcctatggagc 158470
>gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome 18, complete sequence Length = 171769 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 753 gcccagcctggcctatggagc 773 ||||||||||||||||||||| Sbjct: 137227 gcccagcctggcctatggagc 137247
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1008 ggacagccaggaggtggccgt 1028 ||||||||||||||||||||| Sbjct: 2964315 ggacagccaggaggtggccgt 2964335
>gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, complete sequence Length = 186860 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 753 gcccagcctggcctatggagc 773 ||||||||||||||||||||| Sbjct: 18662 gcccagcctggcctatggagc 18642
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 868 tgtgactgatgacgaagcaca 888 ||||||||||||||||||||| Sbjct: 2093520 tgtgactgatgacgaagcaca 2093500
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 868 tgtgactgatgacgaagcaca 888 ||||||||||||||||||||| Sbjct: 2041851 tgtgactgatgacgaagcaca 2041831
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 cgtctccgccgtcctctacgccgcc 245 ||||||||||| ||||||||||||| Sbjct: 4814238 cgtctccgccgacctctacgccgcc 4814214
>gb|AF424783.1| Staphylococcus aureus phage phi 13, complete genome Length = 42722 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 868 tgtgactgatgacgaagcaca 888 ||||||||||||||||||||| Sbjct: 32782 tgtgactgatgacgaagcaca 32802
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 868 tgtgactgatgacgaagcaca 888 ||||||||||||||||||||| Sbjct: 2035858 tgtgactgatgacgaagcaca 2035838
>emb|AJ000330.2|PSSTYCATA Pseudomonas sp. Y2 DNA for styrene catabolism genes Length = 29685 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 agttcctcgccttcctccagg 210 ||||||||||||||||||||| Sbjct: 4286 agttcctcgccttcctccagg 4266
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 868 tgtgactgatgacgaagcaca 888 ||||||||||||||||||||| Sbjct: 2056612 tgtgactgatgacgaagcaca 2056592
>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487H05 Length = 176057 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 209 ggccttcgccgccgtctccgccgtc 233 |||| |||||||||||||||||||| Sbjct: 82531 ggccgtcgccgccgtctccgccgtc 82507
>emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-903H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 202337 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 970 ttctgtcaatctggataaaat 990 ||||||||||||||||||||| Sbjct: 128789 ttctgtcaatctggataaaat 128769
>emb|AL672247.8| Mouse DNA sequence from clone RP23-95I19 on chromosome X, complete sequence Length = 224241 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 611 cttggcaatgactctacgagccatg 635 ||||||||||||||||| ||||||| Sbjct: 49520 cttggcaatgactctactagccatg 49544 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,723,103 Number of extensions: 10257646 Number of successful extensions: 209448 Number of sequences better than 10.0: 29 Number of HSP's gapped: 209437 Number of HSP's successfully gapped: 51 Length of query: 1145 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1122 Effective length of database: 18,503,978,556 Effective search space: 20761463939832 Effective search space used: 20761463939832 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
