ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf40l10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001067573.1| Oryza sativa (japonica cultivar-group) Os08g0158800 (Os08g0158800) mRNA, complete cds Length = 1353 Score = 83.8 bits (42), Expect = 2e-12 Identities = 90/106 (84%) Strand = Plus / Plus Query: 715 gtgggaccacgagcacgaggtgaacgccctgacggcggaggcaagcttcatcgagcggct 774 ||||||||||||||||||||||||| | || || | |||||| |||||| |||||||||| Sbjct: 209 gtgggaccacgagcacgaggtgaacccgctcactggggaggcgagcttcgtcgagcggct 268 Query: 775 ctactacgtggaggagcgcgacatcgcaatgctgcgcgaggcggcg 820 |||||| || |||| ||||||||| | ||||||||||| |||| Sbjct: 269 ctactatgtcgaggccgccgacatcgccaggctgcgcgaggaggcg 314 Score = 61.9 bits (31), Expect = 7e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 839 gcgacgcgcgtccaggcggtgtcggcgtacctgtggaag 877 |||||| |||| ||||||||||||||||||||||||||| Sbjct: 318 gcgacgagcgtgcaggcggtgtcggcgtacctgtggaag 356
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 83.8 bits (42), Expect = 2e-12 Identities = 90/106 (84%) Strand = Plus / Plus Query: 715 gtgggaccacgagcacgaggtgaacgccctgacggcggaggcaagcttcatcgagcggct 774 ||||||||||||||||||||||||| | || || | |||||| |||||| |||||||||| Sbjct: 3424854 gtgggaccacgagcacgaggtgaacccgctcactggggaggcgagcttcgtcgagcggct 3424913 Query: 775 ctactacgtggaggagcgcgacatcgcaatgctgcgcgaggcggcg 820 |||||| || |||| ||||||||| | ||||||||||| |||| Sbjct: 3424914 ctactatgtcgaggccgccgacatcgccaggctgcgcgaggaggcg 3424959 Score = 61.9 bits (31), Expect = 7e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 839 gcgacgcgcgtccaggcggtgtcggcgtacctgtggaag 877 |||||| |||| ||||||||||||||||||||||||||| Sbjct: 3424963 gcgacgagcgtgcaggcggtgtcggcgtacctgtggaag 3425001
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 83.8 bits (42), Expect = 2e-12 Identities = 90/106 (84%) Strand = Plus / Plus Query: 715 gtgggaccacgagcacgaggtgaacgccctgacggcggaggcaagcttcatcgagcggct 774 ||||||||||||||||||||||||| | || || | |||||| |||||| |||||||||| Sbjct: 58273 gtgggaccacgagcacgaggtgaacccgctcactggggaggcgagcttcgtcgagcggct 58332 Query: 775 ctactacgtggaggagcgcgacatcgcaatgctgcgcgaggcggcg 820 |||||| || |||| ||||||||| | ||||||||||| |||| Sbjct: 58333 ctactatgtcgaggccgccgacatcgccaggctgcgcgaggaggcg 58378 Score = 61.9 bits (31), Expect = 7e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 839 gcgacgcgcgtccaggcggtgtcggcgtacctgtggaag 877 |||||| |||| ||||||||||||||||||||||||||| Sbjct: 58382 gcgacgagcgtgcaggcggtgtcggcgtacctgtggaag 58420
>dbj|AK107200.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B02, full insert sequence Length = 1393 Score = 83.8 bits (42), Expect = 2e-12 Identities = 90/106 (84%) Strand = Plus / Plus Query: 715 gtgggaccacgagcacgaggtgaacgccctgacggcggaggcaagcttcatcgagcggct 774 ||||||||||||||||||||||||| | || || | |||||| |||||| |||||||||| Sbjct: 248 gtgggaccacgagcacgaggtgaacccgctcactggggaggcgagcttcgtcgagcggct 307 Query: 775 ctactacgtggaggagcgcgacatcgcaatgctgcgcgaggcggcg 820 |||||| || |||| ||||||||| | ||||||||||| |||| Sbjct: 308 ctactatgtcgaggccgccgacatcgccaggctgcgcgaggaggcg 353 Score = 61.9 bits (31), Expect = 7e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 839 gcgacgcgcgtccaggcggtgtcggcgtacctgtggaag 877 |||||| |||| ||||||||||||||||||||||||||| Sbjct: 357 gcgacgagcgtgcaggcggtgtcggcgtacctgtggaag 395
>gb|DQ244885.1| Zea mays clone 11528 mRNA sequence Length = 1651 Score = 81.8 bits (41), Expect = 7e-12 Identities = 176/221 (79%) Strand = Plus / Plus Query: 335 gtcaatccgagctccggcatgcccgagctccactgcttcaaccaaggaacggagctcatc 394 ||||| || ||||||||| | ||||||||||||||| |||||| || |||||||| || Sbjct: 310 gtcaacccaagctccggcgtccccgagctccactgccacaaccagggcgcggagctcgtc 369 Query: 395 gtgggagacgccggcgtggagctgtggaccctggactggggcctgtcggaggagtcgctc 454 |||||||| | |||||| | ||| | | |||||| | || || | |||||||| || Sbjct: 370 gtgggagaggtcggcgtcgccctgggcagcctggattacggtctcgccgaggagtccctg 429 Query: 455 aagaggatccagctgccgtacgcggcggaggtgccgctctcagtgcagctggtgtccttc 514 |||| |||| | |||||||| | | ||| || ||||||| ||||||||| |||||||| Sbjct: 430 aagaagatcatgatgccgtaccctgaggacgtcacgctctcggtgcagctgctgtccttc 489 Query: 515 acctgcgggggcttcgccgtcgtgtgggcgaccaacaacct 555 | ||||| |||||| ||||||||||||| | ||||||||| Sbjct: 490 gcgtgcggcggcttctccgtcgtgtgggccaacaacaacct 530 Score = 67.9 bits (34), Expect = 1e-07 Identities = 85/102 (83%) Strand = Plus / Plus Query: 1064 aagccgctggtggaggtggcgagcatggtgcgggaggccatcacgtccgtcaactacgac 1123 |||||||||| ||||||||| |||||||||||| ||||||||||| | |||||||| Sbjct: 1045 aagccgctggccgaggtggcggccatggtgcgggataccatcacgtccatagactacgac 1104 Query: 1124 gagctgtaccaggacatggtggactggctggaggtgcacaag 1165 ||| |||||| ||||||||||| |||||||||||||| Sbjct: 1105 gagtacctgcaggacctggtggactgggtggaggtgcacaag 1146 Score = 52.0 bits (26), Expect = 0.007 Identities = 65/78 (83%) Strand = Plus / Plus Query: 733 ggtgaacgccctgacggcggaggcaagcttcatcgagcggctctactacgtggaggagcg 792 |||||||||||||||||| | || |||||| | ||||| ||||||||||| |||| | Sbjct: 720 ggtgaacgccctgacggccgccgccagcttcgtggagcgcctctactacgtcgaggcggc 779 Query: 793 cgacatcgcaatgctgcg 810 ||||||||| | |||||| Sbjct: 780 cgacatcgccaagctgcg 797 Score = 44.1 bits (22), Expect = 1.6 Identities = 34/38 (89%) Strand = Plus / Plus Query: 845 cgcgtccaggcggtgtcggcgtacctgtggaaggtcct 882 ||||||||||||| ||| || ||| ||||||||||||| Sbjct: 835 cgcgtccaggcggggtccgcctacttgtggaaggtcct 872 Score = 44.1 bits (22), Expect = 1.6 Identities = 31/34 (91%) Strand = Plus / Plus Query: 1254 acttcggcttcggccacgccgcgctggcgatgcc 1287 |||||||||||||| |||||||||| ||| |||| Sbjct: 1235 acttcggcttcggcgacgccgcgctcgcgctgcc 1268
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 65.9 bits (33), Expect = 4e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 749 gcggaggcaagcttcatcgagcggctctactacgtggaggagcgcgacatcgcaatgctg 808 |||||||| |||||| |||||| |||||||||||| |||| ||||||||| |||||| Sbjct: 12409261 gcggaggcgagcttcgtcgagcagctctactacgtcgaggccgccgacatcgccatgctg 12409202 Query: 809 cgcgaggcggcgagcac 825 ||||||| |||| |||| Sbjct: 12409201 cgcgaggaggcgcgcac 12409185 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||||||||| |||||||||||||||| Sbjct: 8821206 ggcgacgcgggtacaggcggtgtccgcgtacctgtggaagg 8821166 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 1247 gacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 8816168 gacaccgacttcggccacggccacgccgcgatggcgctgcc 8816128 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||| ||||| |||||||||||||||| Sbjct: 8816574 ggcgacgcgggtacaggcagtgtccgcgtacctgtggaagg 8816534 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||| ||||| |||||||||||||||| Sbjct: 8835318 ggcgacgcgggtacaggcagtgtccgcgtacctgtggaagg 8835358 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1247 gacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 8835724 gacaccgacttcggccacggccacgccgcgatggcgctgcc 8835764 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 8816498 tgccgcatggtgtggtgggtggacggccg 8816470 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 8821130 tgccgcatggtgtggtgggtggacggccg 8821102 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 8835394 tgccgcatggtgtggtgggtggacggccg 8835422
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0011P19 Length = 150811 Score = 65.9 bits (33), Expect = 4e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 749 gcggaggcaagcttcatcgagcggctctactacgtggaggagcgcgacatcgcaatgctg 808 |||||||| |||||| |||||| |||||||||||| |||| ||||||||| |||||| Sbjct: 94906 gcggaggcgagcttcgtcgagcagctctactacgtcgaggccgccgacatcgccatgctg 94847 Query: 809 cgcgaggcggcgagcac 825 ||||||| |||| |||| Sbjct: 94846 cgcgaggaggcgcgcac 94830
>gb|AY107924.1| Zea mays PCO099218 mRNA sequence Length = 625 Score = 60.0 bits (30), Expect = 3e-05 Identities = 75/90 (83%) Strand = Plus / Plus Query: 1076 gaggtggcgagcatggtgcgggaggccatcacgtccgtcaactacgacgagctgtaccag 1135 ||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||| Sbjct: 10 gaggtggcggccatggtgcgggagaccatcacgtccatagactacgacgagtacctgcag 69 Query: 1136 gacatggtggactggctggaggtgcacaag 1165 || ||||||||||| |||||||||||||| Sbjct: 70 gagctggtggactgggtggaggtgcacaag 99
>ref|NM_001049186.1| Oryza sativa (japonica cultivar-group) Os01g0261700 (Os01g0261700) mRNA, partial cds Length = 938 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||||||||| |||||||||||||||| Sbjct: 404 ggcgacgcgggtacaggcggtgtccgcgtacctgtggaagg 444 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 480 tgccgcatggtgtggtgggtggacggccg 508
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 58.0 bits (29), Expect = 1e-04 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 749 gcggaggcaagcttcatcgagcggctctactacgtggaggagcgc-gacatcgcaatgct 807 |||||||| |||||| ||||||||||||||||||| |||| ||| |||||||| | ||| Sbjct: 24851447 gcggaggcgagcttcgtcgagcggctctactacgtcgagg-ccgctgacatcgccaggct 24851505 Query: 808 gcgcgaggcggcg 820 |||||||| |||| Sbjct: 24851506 gcgcgaggaggcg 24851518 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||||||||||||||| Sbjct: 8091908 caggcggtgtcggcgtacctgtggaagg 8091935 Score = 50.1 bits (25), Expect = 0.026 Identities = 52/61 (85%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtccgtcaactacgacga 1125 |||||||| |||||||||| ||||||||||||| |||| |||| || |||||||||| Sbjct: 8092114 gccgctggcggaggtggcggccatggtgcgggagagcatcgcgtcgatcgactacgacga 8092173 Query: 1126 g 1126 | Sbjct: 8092174 g 8092174 Score = 44.1 bits (22), Expect = 1.6 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1246 cgacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| |||||||| || ||||| || ||||| Sbjct: 8092308 cgacaccgacttcgggttcggccaggcggcgctcgccatgcc 8092349
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 58.0 bits (29), Expect = 1e-04 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 749 gcggaggcaagcttcatcgagcggctctactacgtggaggagcgc-gacatcgcaatgct 807 |||||||| |||||| ||||||||||||||||||| |||| ||| |||||||| | ||| Sbjct: 35079 gcggaggcgagcttcgtcgagcggctctactacgtcgagg-ccgctgacatcgccaggct 35137 Query: 808 gcgcgaggcggcg 820 |||||||| |||| Sbjct: 35138 gcgcgaggaggcg 35150
>dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0699D11 Length = 140825 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||||||||| |||||||||||||||| Sbjct: 138663 ggcgacgcgggtacaggcggtgtccgcgtacctgtggaagg 138623 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 1247 gacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 133625 gacaccgacttcggccacggccacgccgcgatggcgctgcc 133585 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||| ||||| |||||||||||||||| Sbjct: 134031 ggcgacgcgggtacaggcagtgtccgcgtacctgtggaagg 133991 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 133955 tgccgcatggtgtggtgggtggacggccg 133927 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 138587 tgccgcatggtgtggtgggtggacggccg 138559
>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0469E09 Length = 146081 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||||||||| |||||||||||||||| Sbjct: 57234 ggcgacgcgggtacaggcggtgtccgcgtacctgtggaagg 57194 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 1247 gacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 52196 gacaccgacttcggccacggccacgccgcgatggcgctgcc 52156 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Minus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||| ||||| |||||||||||||||| Sbjct: 52602 ggcgacgcgggtacaggcagtgtccgcgtacctgtggaagg 52562 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||| ||||| |||||||||||||||| Sbjct: 71346 ggcgacgcgggtacaggcagtgtccgcgtacctgtggaagg 71386 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1247 gacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 71752 gacaccgacttcggccacggccacgccgcgatggcgctgcc 71792 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 52526 tgccgcatggtgtggtgggtggacggccg 52498 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 57158 tgccgcatggtgtggtgggtggacggccg 57130 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 71422 tgccgcatggtgtggtgggtggacggccg 71450
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 58.0 bits (29), Expect = 1e-04 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 749 gcggaggcaagcttcatcgagcggctctactacgtggaggagcgc-gacatcgcaatgct 807 |||||||| |||||| ||||||||||||||||||| |||| ||| |||||||| | ||| Sbjct: 85898 gcggaggcgagcttcgtcgagcggctctactacgtcgagg-ccgctgacatcgccaggct 85956 Query: 808 gcgcgaggcggcg 820 |||||||| |||| Sbjct: 85957 gcgcgaggaggcg 85969
>dbj|AK100325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079J09, full insert sequence Length = 939 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||||||||| |||||||||||||||| Sbjct: 405 ggcgacgcgggtacaggcggtgtccgcgtacctgtggaagg 445 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 481 tgccgcatggtgtggtgggtggacggccg 509
>ref|NM_001065815.1| Oryza sativa (japonica cultivar-group) Os07g0244600 (Os07g0244600) mRNA, complete cds Length = 963 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||||||||||||||| Sbjct: 415 caggcggtgtcggcgtacctgtggaagg 442 Score = 50.1 bits (25), Expect = 0.026 Identities = 52/61 (85%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtccgtcaactacgacga 1125 |||||||| |||||||||| ||||||||||||| |||| |||| || |||||||||| Sbjct: 621 gccgctggcggaggtggcggccatggtgcgggagagcatcgcgtcgatcgactacgacga 680 Query: 1126 g 1126 | Sbjct: 681 g 681 Score = 44.1 bits (22), Expect = 1.6 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1246 cgacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| |||||||| || ||||| || ||||| Sbjct: 753 cgacaccgacttcgggttcggccaggcggcgctcgccatgcc 794
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||||||||||||||| Sbjct: 25680 caggcggtgtcggcgtacctgtggaagg 25707 Score = 50.1 bits (25), Expect = 0.026 Identities = 52/61 (85%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtccgtcaactacgacga 1125 |||||||| |||||||||| ||||||||||||| |||| |||| || |||||||||| Sbjct: 25886 gccgctggcggaggtggcggccatggtgcgggagagcatcgcgtcgatcgactacgacga 25945 Query: 1126 g 1126 | Sbjct: 25946 g 25946 Score = 44.1 bits (22), Expect = 1.6 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1246 cgacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| |||||||| || ||||| || ||||| Sbjct: 26080 cgacaccgacttcgggttcggccaggcggcgctcgccatgcc 26121
>emb|CT835683.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059M12, full insert sequence Length = 1669 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 1370 agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 1429 ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || || ||||| Sbjct: 1413 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 1472 Query: 1430 aagcctctcaccgcggagtacct 1452 ||||||||||| |||| |||||| Sbjct: 1473 aagcctctcacggcggcgtacct 1495 Score = 50.1 bits (25), Expect = 0.026 Identities = 40/45 (88%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtc 1110 |||||||| |||||||||| ||||| ||||||||||||| |||| Sbjct: 1112 gccgctggcggaggtggcggccatggcgcgggaggccatcgcgtc 1156 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||| ||||||||||| Sbjct: 906 caggcggtgtcggcgttcctgtggaagg 933 Score = 44.1 bits (22), Expect = 1.6 Identities = 40/46 (86%) Strand = Plus / Plus Query: 497 gtgcagctggtgtccttcacctgcgggggcttcgccgtcgtgtggg 542 ||||||||| || |||| ||||||| |||||| |||||||||||| Sbjct: 546 gtgcagctgctgcgcttcgcctgcggcggcttctccgtcgtgtggg 591
>dbj|AK241673.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065192H11, full insert sequence Length = 1651 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 1370 agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 1429 ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || || ||||| Sbjct: 1395 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 1454 Query: 1430 aagcctctcaccgcggagtacct 1452 ||||||||||| |||| |||||| Sbjct: 1455 aagcctctcacggcggcgtacct 1477 Score = 50.1 bits (25), Expect = 0.026 Identities = 40/45 (88%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtc 1110 |||||||| |||||||||| ||||| ||||||||||||| |||| Sbjct: 1094 gccgctggcggaggtggcggccatggcgcgggaggccatcgcgtc 1138 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||| ||||||||||| Sbjct: 888 caggcggtgtcggcgttcctgtggaagg 915 Score = 44.1 bits (22), Expect = 1.6 Identities = 40/46 (86%) Strand = Plus / Plus Query: 497 gtgcagctggtgtccttcacctgcgggggcttcgccgtcgtgtggg 542 ||||||||| || |||| ||||||| |||||| |||||||||||| Sbjct: 528 gtgcagctgctgcgcttcgcctgcggcggcttctccgtcgtgtggg 573
>ref|NM_001074894.1| Oryza sativa (japonica cultivar-group) Os11g0644500 (Os11g0644500) mRNA, complete cds Length = 1329 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 1370 agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 1429 ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || || ||||| Sbjct: 1234 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 1293 Query: 1430 aagcctctcaccgcggagtacct 1452 ||||||||||| |||| |||||| Sbjct: 1294 aagcctctcacggcggcgtacct 1316 Score = 50.1 bits (25), Expect = 0.026 Identities = 40/45 (88%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtc 1110 |||||||| |||||||||| ||||| ||||||||||||| |||| Sbjct: 933 gccgctggcggaggtggcggccatggcgcgggaggccatcgcgtc 977 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||| ||||||||||| Sbjct: 727 caggcggtgtcggcgttcctgtggaagg 754 Score = 44.1 bits (22), Expect = 1.6 Identities = 40/46 (86%) Strand = Plus / Plus Query: 497 gtgcagctggtgtccttcacctgcgggggcttcgccgtcgtgtggg 542 ||||||||| || |||| ||||||| |||||| |||||||||||| Sbjct: 445 gtgcagctgctgcgcttcgcctgcggcggcttctccgtcgtgtggg 490
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 1370 agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 1429 ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || || ||||| Sbjct: 94142 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 94201 Query: 1430 aagcctctcaccgcggagtacct 1452 ||||||||||| |||| |||||| Sbjct: 94202 aagcctctcacggcggcgtacct 94224 Score = 50.1 bits (25), Expect = 0.026 Identities = 40/45 (88%) Strand = Plus / Plus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtc 1110 |||||||| |||||||||| ||||| ||||||||||||| |||| Sbjct: 93841 gccgctggcggaggtggcggccatggcgcgggaggccatcgcgtc 93885 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||| ||||||||||| Sbjct: 93635 caggcggtgtcggcgttcctgtggaagg 93662 Score = 44.1 bits (22), Expect = 1.6 Identities = 40/46 (86%) Strand = Plus / Plus Query: 497 gtgcagctggtgtccttcacctgcgggggcttcgccgtcgtgtggg 542 ||||||||| || |||| ||||||| |||||| |||||||||||| Sbjct: 93275 gtgcagctgctgcgcttcgcctgcggcggcttctccgtcgtgtggg 93320
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Minus Query: 1370 agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 1429 ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || || ||||| Sbjct: 24728346 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 24728287 Query: 1430 aagcctctcaccgcggagtacct 1452 ||||||||||| |||| |||||| Sbjct: 24728286 aagcctctcacggcggcgtacct 24728264 Score = 50.1 bits (25), Expect = 0.026 Identities = 40/45 (88%) Strand = Plus / Minus Query: 1066 gccgctggtggaggtggcgagcatggtgcgggaggccatcacgtc 1110 |||||||| |||||||||| ||||| ||||||||||||| |||| Sbjct: 24728647 gccgctggcggaggtggcggccatggcgcgggaggccatcgcgtc 24728603 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Minus Query: 851 caggcggtgtcggcgtacctgtggaagg 878 |||||||||||||||| ||||||||||| Sbjct: 24728853 caggcggtgtcggcgttcctgtggaagg 24728826 Score = 44.1 bits (22), Expect = 1.6 Identities = 40/46 (86%) Strand = Plus / Minus Query: 497 gtgcagctggtgtccttcacctgcgggggcttcgccgtcgtgtggg 542 ||||||||| || |||| ||||||| |||||| |||||||||||| Sbjct: 24729213 gtgcagctgctgcgcttcgcctgcggcggcttctccgtcgtgtggg 24729168
>ref|NM_001049185.1| Oryza sativa (japonica cultivar-group) Os01g0261600 (Os01g0261600) mRNA, complete cds Length = 1383 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 838 ggcgacgcgcgtccaggcggtgtcggcgtacctgtggaagg 878 ||||||||| || ||||| ||||| |||||||||||||||| Sbjct: 699 ggcgacgcgggtacaggcagtgtccgcgtacctgtggaagg 739 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1247 gacaccgacttcggcttcggccacgccgcgctggcgatgcc 1287 ||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 1105 gacaccgacttcggccacggccacgccgcgatggcgctgcc 1145 Score = 42.1 bits (21), Expect = 6.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 932 tgccgcatgctctggtgggtggacggccg 960 ||||||||| | ||||||||||||||||| Sbjct: 775 tgccgcatggtgtggtgggtggacggccg 803
>ref|XM_618406.2| PREDICTED: Bos taurus similar to Prostaglandin F2 receptor negative regulator precursor (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor associated protein) (CD9 partner 1) (CD9P-1) (LOC538209), mRNA Length = 5898 Score = 50.1 bits (25), Expect = 0.026 Identities = 25/25 (100%) Strand = Plus / Minus Query: 905 aagctgctgcccgaggccgagaagc 929 ||||||||||||||||||||||||| Sbjct: 161 aagctgctgcccgaggccgagaagc 137
>gb|AC151604.2| Emiliania huxleyi clone JGIACCU-13A1, complete sequence Length = 36530 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Minus Query: 826 ggagggccagcaggcgacgcgcg 848 ||||||||||||||||||||||| Sbjct: 16572 ggagggccagcaggcgacgcgcg 16550
>gb|AY336570.1| Alligator sinensis Sox1 protein gene, partial cds Length = 168 Score = 46.1 bits (23), Expect = 0.41 Identities = 26/27 (96%) Strand = Plus / Plus Query: 905 aagctgctgcccgaggccgagaagcgg 931 ||||||||| ||||||||||||||||| Sbjct: 91 aagctgctgtccgaggccgagaagcgg 117
>emb|BX897690.13| Zebrafish DNA sequence from clone CH211-197O9 in linkage group 20, complete sequence Length = 128296 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1529 gcaaatccaaatgcatccatgtt 1551 ||||||||||||||||||||||| Sbjct: 47475 gcaaatccaaatgcatccatgtt 47497
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1048 gggcacggtgctgagcaagccgc 1070 ||||||||||||||||||||||| Sbjct: 563208 gggcacggtgctgagcaagccgc 563186
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1048 gggcacggtgctgagcaagccg 1069 |||||||||||||||||||||| Sbjct: 476998 gggcacggtgctgagcaagccg 477019 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1052 acggtgctgagcaagccgctggtgg 1076 ||||||||| ||||||||||||||| Sbjct: 3415951 acggtgctgcgcaagccgctggtgg 3415927
>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete sequence Length = 153053 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1611 gagttgtaaaagtttctccattgaataaat 1640 ||||||||||||||| ||||||||| |||| Sbjct: 35359 gagttgtaaaagtttttccattgaaaaaat 35388
>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence Length = 145544 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1611 gagttgtaaaagtttctccattgaataaat 1640 ||||||||||||||| ||||||||| |||| Sbjct: 84384 gagttgtaaaagtttttccattgaaaaaat 84355
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 844 gcgcgtccaggcggtgtcggcg 865 |||||||||||||||||||||| Sbjct: 4172238 gcgcgtccaggcggtgtcggcg 4172217
>gb|AC133942.3| Mus musculus BAC clone RP23-472J11 from chromosome 7, complete sequence Length = 186014 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 577 gatcatgctggtgaggatgtgg 598 |||||||||||||||||||||| Sbjct: 94569 gatcatgctggtgaggatgtgg 94590
>gb|AC106743.4| Homo sapiens chromosome 16 clone RP11-116D9, complete sequence Length = 117710 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1507 tctctaaattaattcttctcctgcaa 1532 |||||||||||||||| ||||||||| Sbjct: 92675 tctctaaattaattctcctcctgcaa 92650
>ref|XM_960330.1| Neurospora crassa OR74A hypothetical protein (NCU02650.1) partial mRNA Length = 1485 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 904 caagctgctgcccgaggccgag 925 |||||||||||||||||||||| Sbjct: 51 caagctgctgcccgaggccgag 72
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1052 acggtgctgagcaagccgctggtgg 1076 ||||||||| ||||||||||||||| Sbjct: 2948314 acggtgctgcgcaagccgctggtgg 2948290
>gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, complete sequence Length = 179908 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 867 acctgtggaaggtccttgcag 887 ||||||||||||||||||||| Sbjct: 50634 acctgtggaaggtccttgcag 50654
>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence Length = 256556 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 ggtgaaagcctctgacccctccatc 157 |||| |||||||||||||||||||| Sbjct: 101850 ggtgcaagcctctgacccctccatc 101874
>gb|AC108435.5| Mus musculus chromosome 7, clone RP23-229O20, complete sequence Length = 203281 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 atcatgctggtgaggatgtgg 598 ||||||||||||||||||||| Sbjct: 37814 atcatgctggtgaggatgtgg 37794
>gb|AC116350.2| Homo sapiens chromosome 5 clone RP11-357F12, complete sequence Length = 183009 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 actggggcctgtcggaggagt 449 ||||||||||||||||||||| Sbjct: 94633 actggggcctgtcggaggagt 94653
>gb|AC022463.5| Homo sapiens BAC clone RP11-562N2 from 4, complete sequence Length = 190080 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 actggggcctgtcggaggagt 449 ||||||||||||||||||||| Sbjct: 72448 actggggcctgtcggaggagt 72468
>emb|AL451005.9| Human DNA sequence from clone RP11-92B10 on chromosome X Contains the 5' end of a variant of the CUL4B gene for cullin 4B and the 5' end of a variant of the gene for MCT-1 protein (MCT-1), complete sequence Length = 26768 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1345 gggaaacccaggaacgtggat 1365 ||||||||||||||||||||| Sbjct: 17573 gggaaacccaggaacgtggat 17593
>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence Length = 225957 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 133 ggtgaaagcctctgacccctccatc 157 |||| |||||||||||||||||||| Sbjct: 46735 ggtgcaagcctctgacccctccatc 46711
>gb|AC021325.5|AC021325 Homo sapiens chromosome , clone RP11-23N15, complete sequence Length = 180568 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1499 agacctcgtctctaaattaat 1519 ||||||||||||||||||||| Sbjct: 27664 agacctcgtctctaaattaat 27684
>gb|AF246419.1|AF246419 Acidithiobacillus ferroxidans aspartate aminotransferase gene, partial sequence Length = 1602 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1255 cttcggcttcggccacgccgc 1275 ||||||||||||||||||||| Sbjct: 752 cttcggcttcggccacgccgc 732
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1052 acggtgctgagcaagccgctggtgg 1076 ||||||||| ||||||||||||||| Sbjct: 1662881 acggtgctgcgcaagccgctggtgg 1662905
>emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chromosome 2, complete sequence Length = 132674 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1514 attaattcttctcctgcaaatccaa 1538 ||||||||||||||| ||||||||| Sbjct: 28266 attaattcttctcctccaaatccaa 28242
>gb|AC115031.11| Mus musculus chromosome 3, clone RP24-257J5, complete sequence Length = 170460 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1611 gagttgtaaaagtttctccattgaa 1635 ||||||||||||||| ||||||||| Sbjct: 151402 gagttgtaaaagtttttccattgaa 151426 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 227,985,092 Number of extensions: 11244513 Number of successful extensions: 245465 Number of sequences better than 10.0: 48 Number of HSP's gapped: 245456 Number of HSP's successfully gapped: 110 Length of query: 1674 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1651 Effective length of database: 18,503,978,556 Effective search space: 30550068595956 Effective search space used: 30550068595956 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
