>LOC_Os12g32380:12012.t02936:unspliced-genomic 40S ribosomal protein S29, putative, expressed|
          Length = 4408
 Score = 83.5 bits (176), Expect(3) = 4e-27
 Identities = 31/33 (93%), Positives = 31/33 (93%)
 Frame = +3 / +2

                                            
Query: 138 RVCGNSHGLIRKYGLMCCRQCFHSNAKDIGFIK 236
           RVCGN HGLIRKYGLMCCRQCF SNAKDIGFIK
Sbjct: 614 RVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 712



 Score = 58.3 bits (121), Expect(3) = 4e-27
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +3 / +1

                                   
Query: 75  MGHSNVWNSHPKNYGPGSRVCRVC 146
           MGHSNVWNSHPKNYGPGSRV   C
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVWYGC 72



 Score = 27.6 bits (54), Expect(3) = 4e-27
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2 / +1

                                     
Query: 284  G*SNGTLDRRLNFNSSNVCSVLSEC 358
            G* +G  + RLNF+SSN+   L  C
Sbjct: 1402 G*RDGAFNGRLNFSSSNLAVCLVLC 1476



 Score = 68.4 bits (143), Expect(3) = 3e-21
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = -2 / -2

                                            
Query: 235 LMKPMSLALLWKHCLQHISPYFLISPCEFPQTR 137
           LMKPMSLALL KHCLQH+SPYFLISP  FP TR
Sbjct: 711 LMKPMSLALLRKHCLQHMSPYFLISP*GFPHTR 613



 Score = 53.8 bits (111), Expect(3) = 3e-21
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -2 / -3

                                  
Query: 145 QTRQTREPGP*FLGWEFQTLECP 77
           Q  QTREPGP*FLGWEF TLECP
Sbjct: 71  QPYQTREPGP*FLGWEFHTLECP 3



 Score = 27.2 bits (53), Expect(3) = 3e-21
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1 / -1

                            
Query: 335  HYWN*N*AFYQAFHYF 288
            +YWN*N*AF+   H F
Sbjct: 1453 NYWN*N*AFH*MLHLF 1406



 Score = 53.3 bits (110), Expect(3) = 3e-11
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +2 / +1

                                            
Query: 137 PGLWKLAWTDQEVWADVLQAVFPQQCQGHWLHQ 235
           PG+ + +WTDQEV A VLQ V PQQ QGH LHQ
Sbjct: 613 PGVREPSWTDQEVRAHVLQTVLPQQRQGHRLHQ 711



 Score = 35.4 bits (71), Expect(3) = 3e-11
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2 / +3

                             
Query: 83  LQRLELPPQELWARLPRL 136
           LQR+ELPPQEL A LPRL
Sbjct: 9   LQRVELPPQELRAGLPRL 62



 Score = 26.3 bits (51), Expect(3) = 3e-11
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3 / +2

                                
Query: 276  LIRVEVMERLIEGLILIPVM 335
            L+  E ME L+EGLI +PV+
Sbjct: 1394 LLLGEEMEHLMEGLISVPVI 1453



 Score = 60.6 bits (126), Expect = 2e-08
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = -1 / -1

                                             
Query: 236 LDEANVLGIAVETLPAAHQPILPDQSMRVSTDPA 135
           LDEA+VLG+A E L AAH+P+LPDQSMRV   PA
Sbjct: 712 LDEADVLGVAAEALSAAHEPVLPDQSMRVPAHPA 611

>LOC_Os11g41610:12011.t03697:unspliced-genomic 40S ribosomal protein S29, putative, expressed|
          Length = 1755

 Score = 83.5 bits (176), Expect(2) = 1e-25
 Identities = 31/33 (93%), Positives = 31/33 (93%)
 Frame = +3 / +1

                                             
Query: 138  RVCGNSHGLIRKYGLMCCRQCFHSNAKDIGFIK 236
            RVCGN HGLIRKYGLMCCRQCF SNAKDIGFIK
Sbjct: 994  RVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 1092



 Score = 57.4 bits (119), Expect(2) = 1e-25
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3 / +1

                               
Query: 75  MGHSNVWNSHPKNYGPGSRV 134
           MGHSNVWNSHPKNYGPGSRV
Sbjct: 88  MGHSNVWNSHPKNYGPGSRV 147



 Score = 68.9 bits (144), Expect(2) = 6e-19
 Identities = 27/39 (69%), Positives = 30/39 (76%)
 Frame = -1 / -1

                                                   
Query: 251  GELTVLDEANVLGIAVETLPAAHQPILPDQSMRVSTDPA 135
            G    LDEAN+LG+A E LPAAH+PILPDQ MRV  DPA
Sbjct: 1107 GRTIYLDEANILGVAAEALPAAHEPILPDQPMRVPADPA 991



 Score = 49.6 bits (102), Expect(2) = 6e-19
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -2 / -2

                                  
Query: 142 TRQTREPGP*FLGWEFQTLECPM 74
           T QTREPGP*FLGWEF TLE P+
Sbjct: 155 TYQTREPGP*FLGWEFHTLEWPI 87



 Score = 64.3 bits (134), Expect(2) = 3e-14
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +2 / +3

                                             
Query: 137  PGLWKLAWTDQEVWADVLQAVFPQQCQGHWLHQ 235
            PGL + +W DQEVWA VLQAV PQQ QG+WLHQ
Sbjct: 993  PGLREPSWADQEVWAHVLQAVLPQQRQGYWLHQ 1091



 Score = 38.6 bits (78), Expect(2) = 3e-14
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2 / +3

                             
Query: 83  LQRLELPPQELWARLPRL 136
           LQR+ELPPQEL ARLPRL
Sbjct: 96  LQRVELPPQELRARLPRL 149



 Score = 68.9 bits (144), Expect = 6e-11
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -2 / -2

                                             
Query: 235  LMKPMSLALLWKHCLQHISPYFLISPCEFPQTR 137
            LMKP+SLALL KHCLQH+SPYFLISP  FPQTR
Sbjct: 1091 LMKPISLALLRKHCLQHMSPYFLISP*GFPQTR 993

>LOC_Os03g56241:12003.t005748:unspliced-genomic 40S ribosomal protein S29, putative, expressed|
          Length = 1872

 Score = 83.5 bits (176), Expect(2) = 1e-25
 Identities = 31/33 (93%), Positives = 31/33 (93%)
 Frame = +3 / +2

                                            
Query: 138 RVCGNSHGLIRKYGLMCCRQCFHSNAKDIGFIK 236
           RVCGN HGLIRKYGLMCCRQCF SNAKDIGFIK
Sbjct: 383 RVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 481



 Score = 57.4 bits (119), Expect(2) = 1e-25
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3 / +2

                               
Query: 75  MGHSNVWNSHPKNYGPGSRV 134
           MGHSNVWNSHPKNYGPGSRV
Sbjct: 62  MGHSNVWNSHPKNYGPGSRV 121



 Score = 69.3 bits (145), Expect(2) = 2e-17
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = -2 / -1

                                            
Query: 235 LMKPMSLALLWKHCLQHISPYFLISPCEFPQTR 137
           LMKPMSLALL KHCLQH+SPYF I PC  PQTR
Sbjct: 480 LMKPMSLALLRKHCLQHMSPYFRIKPCGLPQTR 382



 Score = 44.6 bits (91), Expect(2) = 2e-17
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = -2 / -1

                                
Query: 136 QTREPGP*FLGWEFQTLECPM 74
           QT +PGP*FLG EF TLECPM
Sbjct: 123 QTLDPGP*FLGCEFHTLECPM 61



 Score = 63.4 bits (132), Expect = 3e-09
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = -1 / -3

                                             
Query: 236 LDEANVLGIAVETLPAAHQPILPDQSMRVSTDPA 135
           LDEANVLG+A E LPAAH+P+LPDQ+MRV+ + A
Sbjct: 481 LDEANVLGVAAEALPAAHEPVLPDQAMRVAANTA 380



 Score = 54.7 bits (113), Expect(2) = 2e-07
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = +2 / +1

                                            
Query: 137 PGLWKLAWTDQEVWADVLQAVFPQQCQGHWLHQ 235
           P L + AW D EV A VLQAV PQQ QGHWLHQ
Sbjct: 382 PCLRQPAWLDPEVRAHVLQAVLPQQRQGHWLHQ 480



 Score = 24.9 bits (48), Expect(2) = 2e-07
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2 / +1

                             
Query: 83  LQRLELPPQELWARLPRL 136
           LQR+EL PQEL  R+  L
Sbjct: 70  LQRVELAPQELRPRIQGL 123



 Score = 31.8 bits (63), Expect = 8.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3 / -2

                       
Query: 234 **SQCPWHCCGN 199
           **SQCPW CCG+
Sbjct: 479 **SQCPWRCCGS 444

>LOC_Os12g42570:12012.t03931:unspliced-genomic expressed protein|
          Length = 4673

 Score = 30.4 bits (60), Expect(2) = 0.94
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3 / +2

                                              
Query: 900  NYILVYRFILECRFNYFVFLGDDVFIDDLTL*IF 1001
            N +  Y FIL   F +  F GDD+ +D L   IF
Sbjct: 1286 NSVACYWFILVVGFGFVPFFGDDMMVDWLGSYIF 1387



 Score = 27.2 bits (53), Expect(2) = 0.94
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3 / +2

                                             
Query: 252 WSWYPEVMLIRVEVMERLIEGLILIPVMFAQYSP 353
           W W P     RV ++ R  EGL       A  SP
Sbjct: 284 WPWPPPARKFRVRLVVRRAEGLTATATATASSSP 385

>LOC_Os02g23980:12002.t02096:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2706

 Score = 34.5 bits (69), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2 / -1

                                                        
Query: 758  ILPSVKEMSFEENRIHKV*RNVLISLCNVNSLQPFFLNTSLLRG 889
            ++ S++ + FEE  +H+   ++      V  L   FLNTSLLRG
Sbjct: 1728 VVGSLQPIGFEEFLLHRQSSDLYTGTREVKQLGKIFLNTSLLRG 1597

>LOC_Os02g57860:12002.t05357:unspliced-genomic F-box domain containing protein, expressed|
          Length = 1809

 Score = 29.9 bits (59), Expect(2) = 2.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3 / +2

                                     
Query: 102 HPKNYGPGSRVCRVCGNSHGLIRKYG 179
           H + Y P  R CR C   H   +K G
Sbjct: 377 HLEGYNPDERCCRRCNRQHSQFQKTG 454



 Score = 24.9 bits (48), Expect(2) = 2.4
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3 / +3

                                    
Query: 255  SWYPEVMLIRVEVMERLIEGLILI 326
            SWYP+ +  +  + +++ EGL+++
Sbjct: 1644 SWYPQTIEEQELLRKQITEGLVMV 1715

>LOC_Os12g36490:12012.t03330:unspliced-genomic expressed protein|
          Length = 6651

 Score = 33.1 bits (66), Expect = 3.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2 / -1

                                                              
Query: 743  IWQILILPSVKEMSFEENRIHKV*RNVLISLCNVNSLQPFFLNTSLLRGF 892
            I  +L+L SVK +       + + R V+IS  N  SL+  FLN S  R F
Sbjct: 1809 IKHMLLLESVKSLGLSRKSFNSLTRRVVISKSN*ISLEAGFLNPS*PRAF 1660

>LOC_Os04g32490:12004.t02928:unspliced-genomic poly, putative, expressed|
          Length = 6540

 Score = 33.1 bits (66), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3 / +2

                                                     
Query: 675  *GRKRHQRFCSACACRLIFFRKRPSCIIFLWSVFHPGFAGY 553
            *G   + RFC      L FF K+ +C   ++  F   FAGY
Sbjct: 1274 *GHSDNIRFCVTAGLPLFFFLKKGTCCNIIFDGFFLHFAGY 1396

>LOC_Os06g03820:12006.t00273:unspliced-genomic expressed protein|
          Length = 1573

 Score = 32.2 bits (64), Expect = 6.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2 / +3

                                        
Query: 386  CNC*T*VNYPWRKPFIIRRCICFSSYHC 469
            C+C T ++ PW +    R C C   +HC
Sbjct: 999  CSCTTTISAPWPRSSSRRHCSCSRCWHC 1082

>LOC_Os05g16280:12005.t01398:unspliced-genomic transposon protein, putative, unclassified|
          Length = 5931

 Score = 32.2 bits (64), Expect = 6.1
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2 / +3

                                           
Query: 256  DQVN*RYLMKPMSLALLWKHCLQHISPYFLI 164
            D+++ RY+ K +  ++L K CL+ ISP+ L+
Sbjct: 3864 DKMDTRYVRKKLK*SILLKGCLKFISPFLLL 3956

>LOC_Os04g04100:12004.t00298:unspliced-genomic hypothetical protein|
          Length = 1545

 Score = 32.2 bits (64), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3 / -2

                                        
Query: 909  LVYRFILECRFNYFVFLGDDVFIDDLTL 992
            ++YRF L  RFNY +F+ D    + LT+
Sbjct: 1016 ILYRFTLRRRFNYNIFIADMQVSESLTI 933

>LOC_Os01g19160:12001.t01705:unspliced-genomic receptor-like protein kinase 5 precursor, putative, expressed|
          Length = 3063

 Score = 32.2 bits (64), Expect = 6.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1 / +3

                          
Query: 520  VYFISISCCICVAS 561
            +YFIS SCCICV S
Sbjct: 1404 IYFISSSCCICVPS 1445

>LOC_Os04g58880:12004.t05349:unspliced-genomic protein binding protein, putative, expressed|
          Length = 6555

 Score = 31.8 bits (63), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3 / +1

                                        
Query: 657  QRFCSACACRLIFFRKRPSCIIFLWSVF 574
            Q  C AC   LIF ++  S + FLW VF
Sbjct: 943  QECCGACPILLIFSKELHSPLSFLWMVF 1026

>LOC_Os02g47160:12002.t04301:unspliced-genomic OsWAK17 - OsWAK short gene, expressed|
          Length = 5656

 Score = 31.8 bits (63), Expect = 8.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1 / +1

                                                   
Query: 436 SEMHMFFLLSLSLIGRSIVPRTCKLNE*VYFISISCCICV 555
           S++ +  L+S +  GR  + RTCKLN  +Y +S  C   V
Sbjct: 52  SDI*ILLLVSGAGRGRPCMERTCKLNSIIYKMSTRCTFVV 171

>LOC_Os02g19720:12002.t01764:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 4932

 Score = 31.8 bits (63), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2 / +2

                              
Query: 607  SFMHHFFMECIPSWLRWL 554
            +F+H FF  C   WLRWL
Sbjct: 4076 TFLHCFFHACPKKWLRWL 4129


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 382,166,384
Number of extensions: 6238031
Number of successful extensions: 19906
Number of sequences better than 10.0: 15
Length of query: 342
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 292
Effective length of database: 52,799,986
Effective search space: 15417595912
Effective search space used: 15417595912
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)