| Clone Name | FLbaf40j06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK241831.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065213B04, full insert sequence Length = 983 Score = 285 bits (144), Expect = 2e-73 Identities = 303/356 (85%) Strand = Plus / Plus Query: 632 tttatgatttccatattgtctacagcttttcttacaaggttccggtgctatactttcaag 691 |||| |||| |||| |||| ||||||||||||||||||||||| |||||||||||||| | Sbjct: 427 tttacgattaccatgttgtgtacagcttttcttacaaggttccagtgctatactttcagg 486 Query: 692 gtcttcagtctggtgggcagctgctaactttagatgagataaaaaaggatcttccttctc 751 ||| |||||||||||| |||||||||||| |||||||||| ||| |||| |||||||||| Sbjct: 487 gtcatcagtctggtggccagctgctaactctagatgagattaaagaggaccttccttctc 546 Query: 752 attcacttcagttgttaaacgaatcaaagtggacatttattactcgagaggagcatcccc 811 ||||| | || ||| |||||||| |||||| ||||||||||||||||||||||||| Sbjct: 547 tctcactcaaattattaggcgaatcaaggtggacgtttattactcgagaggagcatcccc 606 Query: 812 acctaagtaggccatggttcaccttgcatccatgtggaaccagtgactggatgaagttgc 871 | | ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| | Sbjct: 607 attttagtaggccatggttcactttgcatccctgtggaaccagtgactgtatgaagttac 666 Query: 872 ttcttcataaactgggagacaaggatcgatctctgcaatacttgtcagcatggttatctg 931 ||||| | | || ||||||||||| | ||| |||||| |||| ||| || ||| Sbjct: 667 ttcttgaaggaatgcaagacaaggatcaacaagtgcgatacttaccagcttggctaactg 726 Query: 932 tggttggtcaggcagtaggattgaagatcccgcttaagctttattgcaattcatag 987 ||||||| ||||||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 727 tggttggccaggcagtaggattgaaaatcccacttgggcttcattgcaattcatag 782 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 423 gatcgatgtcgacaacgcccttcccgactgggagtggaggccttgccgcaagatgggggt 482 ||||||||| ||| |||| |||||||||||| |||| ||||||| |||||||||| || Sbjct: 275 gatcgatgttgacgacgctcttcccgactggcgatggaagccttgctgcaagatgggagt 334 Query: 483 gccatctgag 492 ||||||||| Sbjct: 335 tccatctgag 344
>ref|NM_001073373.1| Oryza sativa (japonica cultivar-group) Os12g0506800 (Os12g0506800) mRNA, complete cds Length = 1405 Score = 172 bits (87), Expect = 2e-39 Identities = 165/191 (86%) Strand = Plus / Plus Query: 607 cagagctccagggataatgttcacctttatgatttccatattgtctacagcttttcttac 666 |||||||| || || | |||||| ||||||||| |||| ||||||| || ||||||||| Sbjct: 693 cagagctctagtgagagtgttcatatttatgattaccatgttgtctatagtttttcttac 752 Query: 667 aaggttccggtgctatactttcaaggtcttcagtctggtgggcagctgctaactttagat 726 |||||||| |||||||||||||| |||| |||| ||||||| |||||||||||| ||||| Sbjct: 753 aaggttccagtgctatactttcagggtcatcaggctggtggccagctgctaactctagat 812 Query: 727 gagataaaaaaggatcttccttctcattcacttcagttgttaaacgaatcaaagtggaca 786 ||||||||| |||| ||||||||||| |||||| | || ||| ||||| ||||||||| Sbjct: 813 gagataaaagaggaccttccttctcactcacttaaattattaggtgaatcgaagtggaca 872 Query: 787 tttattactcg 797 ||||||||||| Sbjct: 873 tttattactcg 883 Score = 135 bits (68), Expect = 4e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 912 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 971 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | ||| | ||||||||| | | |||||||||| | | Sbjct: 972 gtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccgg 1031 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttat 975 ||||| ||||||||||||| |||||||||||| |||| ||||| ||| |||||||| Sbjct: 1032 catggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttat 1087
>dbj|AK099684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072A20, full insert sequence Length = 1406 Score = 172 bits (87), Expect = 2e-39 Identities = 165/191 (86%) Strand = Plus / Plus Query: 607 cagagctccagggataatgttcacctttatgatttccatattgtctacagcttttcttac 666 |||||||| || || | |||||| ||||||||| |||| ||||||| || ||||||||| Sbjct: 694 cagagctctagtgagagtgttcatatttatgattaccatgttgtctatagtttttcttac 753 Query: 667 aaggttccggtgctatactttcaaggtcttcagtctggtgggcagctgctaactttagat 726 |||||||| |||||||||||||| |||| |||| ||||||| |||||||||||| ||||| Sbjct: 754 aaggttccagtgctatactttcagggtcatcaggctggtggccagctgctaactctagat 813 Query: 727 gagataaaaaaggatcttccttctcattcacttcagttgttaaacgaatcaaagtggaca 786 ||||||||| |||| ||||||||||| |||||| | || ||| ||||| ||||||||| Sbjct: 814 gagataaaagaggaccttccttctcactcacttaaattattaggtgaatcgaagtggaca 873 Query: 787 tttattactcg 797 ||||||||||| Sbjct: 874 tttattactcg 884 Score = 135 bits (68), Expect = 4e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 913 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 972 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | ||| | ||||||||| | | |||||||||| | | Sbjct: 973 gtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccgg 1032 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttat 975 ||||| ||||||||||||| |||||||||||| |||| ||||| ||| |||||||| Sbjct: 1033 catggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttat 1088
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 135 bits (68), Expect = 4e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 19483349 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 19483408 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | ||| | ||||||||| | | |||||||||| | | Sbjct: 19483409 gtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccgg 19483468 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttat 975 ||||| ||||||||||||| |||||||||||| |||| ||||| ||| |||||||| Sbjct: 19483469 catggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttat 19483524 Score = 95.6 bits (48), Expect = 3e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||| | Sbjct: 19483136 ggtggccagctgctaactctagatgagataaaagaggaccttccttctcactcacttaaa 19483195 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| ||||| |||||||||||||||||||| |||| Sbjct: 19483196 ttattaggtgaatcgaagtggacatttattactcgggagg 19483235 Score = 85.7 bits (43), Expect = 3e-13 Identities = 85/99 (85%) Strand = Plus / Plus Query: 607 cagagctccagggataatgttcacctttatgatttccatattgtctacagcttttcttac 666 |||||||| || || | |||||| ||||||||| |||| ||||||| || ||||||||| Sbjct: 19482962 cagagctctagtgagagtgttcatatttatgattaccatgttgtctatagtttttcttac 19483021 Query: 667 aaggttccggtgctatactttcaaggtcttcagtctggt 705 |||||||| |||||||||||||| |||| |||| ||||| Sbjct: 19483022 aaggttccagtgctatactttcagggtcatcaggctggt 19483060
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 135 bits (68), Expect = 4e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 161043 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 161102 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | ||| | ||||||||| | | |||||||||| | | Sbjct: 161103 gtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccgg 161162 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttat 975 ||||| ||||||||||||| |||||||||||| |||| ||||| ||| |||||||| Sbjct: 161163 catggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttat 161218 Score = 95.6 bits (48), Expect = 3e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||| | Sbjct: 160830 ggtggccagctgctaactctagatgagataaaagaggaccttccttctcactcacttaaa 160889 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| ||||| |||||||||||||||||||| |||| Sbjct: 160890 ttattaggtgaatcgaagtggacatttattactcgggagg 160929 Score = 85.7 bits (43), Expect = 3e-13 Identities = 85/99 (85%) Strand = Plus / Plus Query: 607 cagagctccagggataatgttcacctttatgatttccatattgtctacagcttttcttac 666 |||||||| || || | |||||| ||||||||| |||| ||||||| || ||||||||| Sbjct: 160656 cagagctctagtgagagtgttcatatttatgattaccatgttgtctatagtttttcttac 160715 Query: 667 aaggttccggtgctatactttcaaggtcttcagtctggt 705 |||||||| |||||||||||||| |||| |||| ||||| Sbjct: 160716 aaggttccagtgctatactttcagggtcatcaggctggt 160754
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 135 bits (68), Expect = 4e-28 Identities = 149/176 (84%) Strand = Plus / Plus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 15530 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 15589 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | ||| | ||||||||| | | |||||||||| | | Sbjct: 15590 gtatgaagttacttcttgaaggagtggaaaacaaggatcaacatgtgcaatacttaccgg 15649 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttat 975 ||||| ||||||||||||| |||||||||||| |||| ||||| ||| |||||||| Sbjct: 15650 catggctatctgtggttggccaggcagtaggactgaaaatcccacttgagctttat 15705 Score = 95.6 bits (48), Expect = 3e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||| | Sbjct: 15317 ggtggccagctgctaactctagatgagataaaagaggaccttccttctcactcacttaaa 15376 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| ||||| |||||||||||||||||||| |||| Sbjct: 15377 ttattaggtgaatcgaagtggacatttattactcgggagg 15416 Score = 85.7 bits (43), Expect = 3e-13 Identities = 85/99 (85%) Strand = Plus / Plus Query: 607 cagagctccagggataatgttcacctttatgatttccatattgtctacagcttttcttac 666 |||||||| || || | |||||| ||||||||| |||| ||||||| || ||||||||| Sbjct: 15143 cagagctctagtgagagtgttcatatttatgattaccatgttgtctatagtttttcttac 15202 Query: 667 aaggttccggtgctatactttcaaggtcttcagtctggt 705 |||||||| |||||||||||||| |||| |||| ||||| Sbjct: 15203 aaggttccagtgctatactttcagggtcatcaggctggt 15241
>emb|CR855209.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E01, complete sequence Length = 86215 Score = 127 bits (64), Expect = 1e-25 Identities = 157/188 (83%) Strand = Plus / Minus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 45603 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 45544 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | || ||||||||||| | ||| |||||| ||| Sbjct: 45543 gtatgaagttacttcttgaaggaatgcaagacaaggatcaacaagtgcgatacttaccag 45484 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttattgca 979 | ||| || |||||||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 45483 cttggctaactgtggttggccaggcagtaggattgaaaatcccacttgggcttcattgca 45424 Query: 980 attcatag 987 |||||||| Sbjct: 45423 attcatag 45416 Score = 91.7 bits (46), Expect = 5e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 632 tttatgatttccatattgtctacagcttttcttacaaggttccggtgctatactttcaag 691 |||| |||| |||| |||| ||||||||||||||||||||||| |||||||||||||| | Sbjct: 45955 tttacgattaccatgttgtgtacagcttttcttacaaggttccagtgctatactttcagg 45896 Query: 692 gtcttcagtctggt 705 ||| |||||||||| Sbjct: 45895 gtcatcagtctggt 45882 Score = 79.8 bits (40), Expect = 2e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||| ||| |||| |||||||||| ||||| | Sbjct: 45803 ggtggccagctgctaactctagatgagattaaagaggaccttccttctctctcactcaaa 45744 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| |||||||| |||||| |||||||||||||||| Sbjct: 45743 ttattaggcgaatcaaggtggacgtttattactcgagagg 45704 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 423 gatcgatgtcgacaacgcccttcccgactgggagtggaggccttgccgcaagatgggggt 482 ||||||||| ||| |||| |||||||||||| |||| ||||||| |||||||||| || Sbjct: 46484 gatcgatgttgacgacgctcttcccgactggcgatggaagccttgctgcaagatgggagt 46425 Query: 483 gccatctgag 492 ||||||||| Sbjct: 46424 tccatctgag 46415
>emb|CR855207.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306B06, complete sequence Length = 87509 Score = 127 bits (64), Expect = 1e-25 Identities = 157/188 (83%) Strand = Plus / Minus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 81445 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 81386 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | || ||||||||||| | ||| |||||| ||| Sbjct: 81385 gtatgaagttacttcttgaaggaatgcaagacaaggatcaacaagtgcgatacttaccag 81326 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttattgca 979 | ||| || |||||||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 81325 cttggctaactgtggttggccaggcagtaggattgaaaatcccacttgggcttcattgca 81266 Query: 980 attcatag 987 |||||||| Sbjct: 81265 attcatag 81258 Score = 91.7 bits (46), Expect = 5e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 632 tttatgatttccatattgtctacagcttttcttacaaggttccggtgctatactttcaag 691 |||| |||| |||| |||| ||||||||||||||||||||||| |||||||||||||| | Sbjct: 81797 tttacgattaccatgttgtgtacagcttttcttacaaggttccagtgctatactttcagg 81738 Query: 692 gtcttcagtctggt 705 ||| |||||||||| Sbjct: 81737 gtcatcagtctggt 81724 Score = 79.8 bits (40), Expect = 2e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||| ||| |||| |||||||||| ||||| | Sbjct: 81645 ggtggccagctgctaactctagatgagattaaagaggaccttccttctctctcactcaaa 81586 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| |||||||| |||||| |||||||||||||||| Sbjct: 81585 ttattaggcgaatcaaggtggacgtttattactcgagagg 81546 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 423 gatcgatgtcgacaacgcccttcccgactgggagtggaggccttgccgcaagatgggggt 482 ||||||||| ||| |||| |||||||||||| |||| ||||||| |||||||||| || Sbjct: 82326 gatcgatgttgacgacgctcttcccgactggcgatggaagccttgctgcaagatgggagt 82267 Query: 483 gccatctgag 492 ||||||||| Sbjct: 82266 tccatctgag 82257
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 127 bits (64), Expect = 1e-25 Identities = 157/188 (83%) Strand = Plus / Minus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24851683 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 24851624 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | || ||||||||||| | ||| |||||| ||| Sbjct: 24851623 gtatgaagttacttcttgaaggaatgcaagacaaggatcaacaagtgcgatacttaccag 24851564 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttattgca 979 | ||| || |||||||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 24851563 cttggctaactgtggttggccaggcagtaggattgaaaatcccacttgggcttcattgca 24851504 Query: 980 attcatag 987 |||||||| Sbjct: 24851503 attcatag 24851496 Score = 91.7 bits (46), Expect = 5e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 632 tttatgatttccatattgtctacagcttttcttacaaggttccggtgctatactttcaag 691 |||| |||| |||| |||| ||||||||||||||||||||||| |||||||||||||| | Sbjct: 24852035 tttacgattaccatgttgtgtacagcttttcttacaaggttccagtgctatactttcagg 24851976 Query: 692 gtcttcagtctggt 705 ||| |||||||||| Sbjct: 24851975 gtcatcagtctggt 24851962 Score = 79.8 bits (40), Expect = 2e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||| ||| |||| |||||||||| ||||| | Sbjct: 24851883 ggtggccagctgctaactctagatgagattaaagaggaccttccttctctctcactcaaa 24851824 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| |||||||| |||||| |||||||||||||||| Sbjct: 24851823 ttattaggcgaatcaaggtggacgtttattactcgagagg 24851784 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 423 gatcgatgtcgacaacgcccttcccgactgggagtggaggccttgccgcaagatgggggt 482 ||||||||| ||| |||| |||||||||||| |||| ||||||| |||||||||| || Sbjct: 24852810 gatcgatgttgacgacgctcttcccgactggcgatggaagccttgctgcaagatgggagt 24852751 Query: 483 gccatctgag 492 ||||||||| Sbjct: 24852750 tccatctgag 24852741
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 127 bits (64), Expect = 1e-25 Identities = 157/188 (83%) Strand = Plus / Minus Query: 800 aggagcatccccacctaagtaggccatggttcaccttgcatccatgtggaaccagtgact 859 ||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 113399 aggagcatccccattttagtaggccatggttcactttgcatccctgtggaaccagtgact 113340 Query: 860 ggatgaagttgcttcttcataaactgggagacaaggatcgatctctgcaatacttgtcag 919 | |||||||| |||||| | | || ||||||||||| | ||| |||||| ||| Sbjct: 113339 gtatgaagttacttcttgaaggaatgcaagacaaggatcaacaagtgcgatacttaccag 113280 Query: 920 catggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctttattgca 979 | ||| || |||||||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 113279 cttggctaactgtggttggccaggcagtaggattgaaaatcccacttgggcttcattgca 113220 Query: 980 attcatag 987 |||||||| Sbjct: 113219 attcatag 113212 Score = 91.7 bits (46), Expect = 5e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 632 tttatgatttccatattgtctacagcttttcttacaaggttccggtgctatactttcaag 691 |||| |||| |||| |||| ||||||||||||||||||||||| |||||||||||||| | Sbjct: 113751 tttacgattaccatgttgtgtacagcttttcttacaaggttccagtgctatactttcagg 113692 Query: 692 gtcttcagtctggt 705 ||| |||||||||| Sbjct: 113691 gtcatcagtctggt 113678 Score = 79.8 bits (40), Expect = 2e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 703 ggtgggcagctgctaactttagatgagataaaaaaggatcttccttctcattcacttcag 762 ||||| |||||||||||| |||||||||| ||| |||| |||||||||| ||||| | Sbjct: 113599 ggtggccagctgctaactctagatgagattaaagaggaccttccttctctctcactcaaa 113540 Query: 763 ttgttaaacgaatcaaagtggacatttattactcgagagg 802 || ||| |||||||| |||||| |||||||||||||||| Sbjct: 113539 ttattaggcgaatcaaggtggacgtttattactcgagagg 113500 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 423 gatcgatgtcgacaacgcccttcccgactgggagtggaggccttgccgcaagatgggggt 482 ||||||||| ||| |||| |||||||||||| |||| ||||||| |||||||||| || Sbjct: 114526 gatcgatgttgacgacgctcttcccgactggcgatggaagccttgctgcaagatgggagt 114467 Query: 483 gccatctgag 492 ||||||||| Sbjct: 114466 tccatctgag 114457
>gb|BT016613.1| Zea mays clone Contig446 mRNA sequence Length = 1233 Score = 95.6 bits (48), Expect = 3e-16 Identities = 207/260 (79%) Strand = Plus / Plus Query: 608 agagctccagggataatgttcacctttatgatttccatattgtctacagcttttcttaca 667 |||||||||| || |||||||| | |||||| ||||| ||||||||||||| || |||| Sbjct: 542 agagctccagcgacaatgttcatgtatatgatgtccatgttgtctacagcttctcctaca 601 Query: 668 aggttccggtgctatactttcaaggtcttcagtctggtgggcagctgctaactttagatg 727 | | || | ||||||||||| || ||| || |||||||||| |||||| |||||| Sbjct: 602 aaggcccagagctatactttcgcgggtatcacactagtgggcagctactaactctagatg 661 Query: 728 agataaaaaaggatcttccttctcattcacttcagttgttaaacgaatcaaagtggacat 787 || ||||| ||| ||||||||| || |||| | | |||| |||||||||||||| | Sbjct: 662 aggtaaaagagggtcttccttcccactcacagaaagtattaagtgaatcaaagtggacgt 721 Query: 788 ttattactcgagaggagcatccccacctaagtaggccatggttcaccttgcatccatgtg 847 ||||||||| ||||||||| ||||| |||| | ||||||| | || |||| || |||| Sbjct: 722 ttattactcaagaggagcacccccatttaagcaagccatggctggccctgcacccctgtg 781 Query: 848 gaaccagtgactggatgaag 867 |||||||| ||||||||| Sbjct: 782 caaccagtggttggatgaag 801 Score = 60.0 bits (30), Expect = 2e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 919 gcatggttatctgtggttggtcaggcagtaggattgaagatcccgcttaagctt 972 ||||||||||| |||||||| |||||||||||| |||| ||||| ||| ||||| Sbjct: 859 gcatggttatccgtggttggccaggcagtaggactgaaaatccctcttgagctt 912
>dbj|AK228807.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-12-M11 Length = 3486 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 450 gaatctaagtggacttttataactcaagaggagcatcc 487
>ref|NM_180202.1| Arabidopsis thaliana transporter (AT3G07525) mRNA, complete cds Length = 837 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 485 gaatctaagtggacttttataactcaagaggagcatcc 522
>ref|NM_180201.2| Arabidopsis thaliana transporter (AT3G07525) mRNA, complete cds Length = 889 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 517 gaatctaagtggacttttataactcaagaggagcatcc 554
>gb|AY142587.1| Arabidopsis thaliana unknown protein (At3g07525) mRNA, complete cds Length = 709 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 460 gaatctaagtggacttttataactcaagaggagcatcc 497
>gb|AY065244.1| Arabidopsis thaliana unknown protein (At3g07525) mRNA, complete cds Length = 850 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 482 gaatctaagtggacttttataactcaagaggagcatcc 519
>gb|AC105451.3| Homo sapiens BAC clone RP11-121A15 from 4, complete sequence Length = 155702 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 734 aaaaggatcttccttctcattcactt 759 |||||||||||||||||| ||||||| Sbjct: 42209 aaaaggatcttccttctccttcactt 42184
>emb|BX818575.1|CNS0ACL7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZD09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 820 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 517 gaatctaagtggacttttataactcaagaggagcatcc 554
>emb|BX826098.1|CNS0A6FU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 877 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 772 gaatcaaagtggacatttattactcgagaggagcatcc 809 ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 505 gaatctaagtggacttttataactcaagaggagcatcc 542
>gb|AF542531.2| Cryptococcus neoformans var. neoformans strain JEC21 mating type alpha locus, complete sequence Length = 133474 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 cctgcccgccttgttggtcgt 313 ||||||||||||||||||||| Sbjct: 24696 cctgcccgccttgttggtcgt 24676
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cctgcccgccttgttggtcgt 313 ||||||||||||||||||||| Sbjct: 1624618 cctgcccgccttgttggtcgt 1624638
>gb|AC016747.7| Homo sapiens BAC clone RP11-493E12 from 2, complete sequence Length = 152345 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1020 ccattgtcatgtggatgttcc 1040 ||||||||||||||||||||| Sbjct: 110367 ccattgtcatgtggatgttcc 110387
>gb|AC017028.11| Homo sapiens BAC clone RP11-275G7 from 2, complete sequence Length = 201971 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1058 agtgaaatgggaagtgttcac 1078 ||||||||||||||||||||| Sbjct: 144871 agtgaaatgggaagtgttcac 144851
>ref|XM_570538.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND05920) partial mRNA Length = 4569 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 cctgcccgccttgttggtcgt 313 ||||||||||||||||||||| Sbjct: 3646 cctgcccgccttgttggtcgt 3626 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 171,129,209 Number of extensions: 9622288 Number of successful extensions: 166577 Number of sequences better than 10.0: 24 Number of HSP's gapped: 166566 Number of HSP's successfully gapped: 57 Length of query: 1154 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1131 Effective length of database: 18,503,978,556 Effective search space: 20927999746836 Effective search space used: 20927999746836 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)