ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf37i02 |
|---|---|
| Clone Library Name | barley_pub |
>O04438:SRP09_MAIZE Signal recognition particle 9 kDa protein - Zea mays (Maize)| Length = 103 Score = 169 bits (429), Expect = 7e-42 Identities = 81/90 (90%), Positives = 84/90 (93%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 MVY DSW+EFV+RSVQLFR DP TRY MKYRHC+GKLVLKVTDDRECLKFKTDQAQDAK Sbjct: 1 MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60 Query: 335 KMEKLNNIFFALMTRGPDADISEVSGKEQA 424 KMEKLNNIFFALMTRGPD DISEVSGKEQA Sbjct: 61 KMEKLNNIFFALMTRGPDVDISEVSGKEQA 90
>Q9SMU7:SRP09_ARATH Signal recognition particle 9 kDa protein - Arabidopsis thaliana| (Mouse-ear cress) Length = 103 Score = 162 bits (409), Expect = 1e-39 Identities = 76/89 (85%), Positives = 82/89 (92%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 MVY SWDEFVDRSVQLFRADP +TRY MKYRHCDGKLVLKVTD++ECLKFKTDQAQ+AK Sbjct: 1 MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60 Query: 335 KMEKLNNIFFALMTRGPDADISEVSGKEQ 421 KMEKLNNIFF LM RGPD D+SEV+GKEQ Sbjct: 61 KMEKLNNIFFTLMARGPDVDLSEVTGKEQ 89
>P49962:SRP09_MOUSE Signal recognition particle 9 kDa protein - Mus musculus (Mouse)| Length = 86 Score = 79.0 bits (193), Expect = 2e-14 Identities = 36/73 (49%), Positives = 49/73 (67%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 M F +W+EF + +L+ ADP+ R +KYRH DG L +KVTDD CL ++TDQAQD K Sbjct: 1 MPQFQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVK 60 Query: 335 KMEKLNNIFFALM 373 K+EK ++ LM Sbjct: 61 KIEKFHSQLMRLM 73
>P49458:SRP09_HUMAN Signal recognition particle 9 kDa protein - Homo sapiens (Human)| Length = 86 Score = 78.6 bits (192), Expect = 2e-14 Identities = 36/73 (49%), Positives = 49/73 (67%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 M + +W+EF + +L+ ADP+ R +KYRH DG L +KVTDD CL +KTDQAQD K Sbjct: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 60 Query: 335 KMEKLNNIFFALM 373 K+EK ++ LM Sbjct: 61 KIEKFHSQLMRLM 73
>P21262:SRP09_CANFA Signal recognition particle 9 kDa protein - Canis familiaris (Dog)| Length = 86 Score = 78.6 bits (192), Expect = 2e-14 Identities = 35/73 (47%), Positives = 49/73 (67%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 M + +W+EF + +L+ ADP+ R +KYRH DG L +KVTDD CL ++TDQAQD K Sbjct: 1 MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60 Query: 335 KMEKLNNIFFALM 373 K+EK ++ LM Sbjct: 61 KIEKFHSQLMRLM 73
>P34642:SRP09_CAEEL Signal recognition particle 9 kDa protein homolog - Caenorhabditis| elegans Length = 76 Score = 75.1 bits (183), Expect = 2e-13 Identities = 34/67 (50%), Positives = 46/67 (68%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 M YF SWDEF + +L A+P R+ KY H G+LVLK+TDD CL++ T+Q QD K Sbjct: 1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60 Query: 335 KMEKLNN 355 K+EKL++ Sbjct: 61 KLEKLSS 67
>Q9VSC1:SRP09_DROME Signal recognition particle 9 kDa protein homolog - Drosophila| melanogaster (Fruit fly) Length = 77 Score = 56.6 bits (135), Expect = 9e-08 Identities = 23/67 (34%), Positives = 42/67 (62%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYRHCDGKLVLKVTDDRECLKFKTDQAQDAK 334 MV+ +WD+F ++ A+P R MKY H G ++LK+TD+ +C+++K + D + Sbjct: 1 MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQYKAENMPDLR 60 Query: 335 KMEKLNN 355 K+EK+ + Sbjct: 61 KIEKITS 67
>O13804:YE07_SCHPO Uncharacterized protein C17H9.07 - Schizosaccharomyces pombe| (Fission yeast) Length = 120 Score = 37.0 bits (84), Expect = 0.072 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +2 Query: 155 MVYFDSWDEFVDRSVQLFRADPITTRYCMKYR---HCDGKLVLKVTDDRE--CLKFKTDQ 319 MVY + +EF +S L A P TT+ +KYR L+ K + CLK++TD+ Sbjct: 1 MVYLQTVNEFFTQSKSLTEAYPKTTKLSIKYRTNEQSQNYLIAKAFESASGICLKYRTDK 60 Query: 320 AQDAKKMEKLNN 355 A + ++ + N Sbjct: 61 AAELGRLLLIAN 72
>Q32LP9:COR2A_BOVIN Coronin-2A - Bos taurus (Bovine)| Length = 525 Score = 32.3 bits (72), Expect = 1.8 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 554 PTLSSQ--LQHVTWLTGVNQK-IHPPLAPGCDPTASCPVPSLIAAAPPVPSLKPRLY 393 PT S+Q L WL+G+N++ + L PG +P + P+PS + P P L+ Sbjct: 371 PTASAQPSLTAQEWLSGMNKEPVLMSLRPGAEPLSPQPLPSERTLSMPTAPTSPHLF 427
>P97305:NFAC3_MOUSE Nuclear factor of activated T-cells, cytoplasmic 3 - Mus musculus| (Mouse) Length = 1075 Score = 31.6 bits (70), Expect = 3.0 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = -2 Query: 545 SSQLQHVTWLTGVNQKIHPPLAPGCDPTASCPVPSLIAAAPPVPSLKPRLYQ 390 SS LQ +T+ HP A P AS P+ S + P P L+P YQ Sbjct: 906 SSHLQPITYCPS-----HPGSATAASPAASHPLASSPISGPSSPQLQPMPYQ 952
>Q12968:NFAC3_HUMAN Nuclear factor of activated T-cells, cytoplasmic 3 - Homo sapiens| (Human) Length = 1075 Score = 31.6 bits (70), Expect = 3.0 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = -2 Query: 545 SSQLQHVTWLTGVNQKIHPPLAPGCDPTASCPVPSLIAAAPPVPSLKPRLYQ 390 SSQLQ +T+ H A P AS P+ S + PP P L+P YQ Sbjct: 907 SSQLQPITYGPS-----HSGSATTASPAASHPLASSPLSGPPSPQLQPMPYQ 953
>P16527:MARCS_CHICK Myristoylated alanine-rich C-kinase substrate - Gallus gallus| (Chicken) Length = 281 Score = 30.8 bits (68), Expect = 5.2 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = +1 Query: 271 AQGHRRPRVLEV*DGSSSGCKEDGKAQQHLFRSHDSWT*C*YKRGFREG------TGGAA 432 A+G P+ E SSS K ++ F+ + +K+ +E GGAA Sbjct: 95 AEGEASPKTEEGATPSSSSETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAESEGGAA 154 Query: 433 AIKEGTGQEAVGSQPGASGG 492 A EG +EA + P A+GG Sbjct: 155 AAAEGGKEEAAAAAPEAAGG 174
>O35601:FYB_MOUSE FYN-binding protein - Mus musculus (Mouse)| Length = 819 Score = 30.4 bits (67), Expect = 6.7 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -2 Query: 488 PLAPGCDPTASCPVPSLIAAAPPVPSLKPR 399 P P P + P+P+ A PPVPSL PR Sbjct: 381 PPPPPTHPASQPPLPASHPAHPPVPSLPPR 410
>P24053:NMBR_RAT Neuromedin-B receptor - Rattus norvegicus (Rat)| Length = 390 Score = 30.4 bits (67), Expect = 6.8 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Frame = -1 Query: 597 VYFAVLYQEKDPMMAHIVFTTTACNMANRSQPKNPSTARSRLRSYCLLPRPFFD--CCCS 424 +Y + Y+E DP + H++ T A ++ + NP S+ R F+ CC Sbjct: 287 LYRSFNYKEIDPSLGHMIVTLVARVLSFSNSCVNPFALYLLSESF----RKHFNSQLCCG 342 Query: 423 ACSFPETS---LISASGPRVMRAK 361 S+PE S L+S+S R+ K Sbjct: 343 QKSYPERSTSYLLSSSAVRMTSLK 366
>O54799:NMBR_MOUSE Neuromedin-B receptor - Mus musculus (Mouse)| Length = 390 Score = 30.4 bits (67), Expect = 6.8 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Frame = -1 Query: 597 VYFAVLYQEKDPMMAHIVFTTTACNMANRSQPKNPSTARSRLRSYCLLPRPFFD--CCCS 424 +Y + Y+E DP + H++ T A ++ + NP S+ R F+ CC Sbjct: 287 LYRSFNYKEIDPSLGHMIVTLVARVLSFSNSCVNPFALYLLSESF----RKHFNSQLCCG 342 Query: 423 ACSFPETS---LISASGPRVMRAK 361 S+PE S L+S+S R+ K Sbjct: 343 RKSYPERSTSYLLSSSAVRMTSLK 366
>O18964:SYNJ1_BOVIN Synaptojanin-1 - Bos taurus (Bovine)| Length = 1324 Score = 30.0 bits (66), Expect = 8.8 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 36 LANAALFKPRQTPPSKPPRSRRDHA 110 LA +AL +TPP PPRSR H+ Sbjct: 1256 LAQSALQPSLETPPQPPPRSRSSHS 1280 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 111,467,334 Number of extensions: 2334723 Number of successful extensions: 8591 Number of sequences better than 10.0: 16 Number of HSP's gapped: 8566 Number of HSP's successfully gapped: 16 Length of query: 234 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 124 Effective length of database: 70,513,989 Effective search space: 8743734636 Effective search space used: 8743734636 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
