ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf37i02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245979.1| Zea mays clone 93839 mRNA sequence Length = 689 Score = 688 bits (347), Expect = 0.0 Identities = 387/399 (96%), Gaps = 1/399 (0%) Strand = Plus / Plus Query: 68 gactcctcccagcaaaccccccagatcccgacgagaccacgccacaccgcggcgaagccc 127 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gactcctccccgcaaacccc-cagatcccgacgagaccacgccacaccgcggcgaagccc 59 Query: 128 tagcctccggccagcgccgccgcagcgatggtgtacttcgactcctgggacgagttcgtt 187 |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| Sbjct: 60 tagcctccggccagtgccgccgcagcgatggtgtacttcgattcatgggacgagttcgtc 119 Query: 188 gaccggtccgtgcagctcttccgcgccgaccccatcaccactcgctattgcatgaagtac 247 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 120 gaccggtccgtgcagctcttccgcgccgaccccatcaccactcgctattgtatgaagtac 179 Query: 248 cggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgagtgcttgaagttt 307 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 180 cggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgagtgcctgaagttt 239 Query: 308 aagacggatcaagctcaggatgcaaagaagatggaaaagctcaacaacatctttttcgct 367 ||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 240 aagactgatcaagctcaggacgcaaagaagatggagaagcttaacaacatctttttcgct 299 Query: 368 ctcatgactcgtggacctgatgctgatataagcgaggtttcagggaaggaacaggcggag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ctcatgactcgtggacctgatgctgatataagcgaggtttcagggaaggaacaggcggag 359 Query: 428 cagcagcaatcaaagaagggacggggcaggaggcagtag 466 ||||||||||||||||||||||||||||||||||||||| Sbjct: 360 cagcagcaatcaaagaagggacggggcaggaggcagtag 398 Score = 170 bits (86), Expect = 4e-39 Identities = 130/142 (91%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 542 aagacaatgtgggccatcattggatcctttt-cctggtacagaactgcgaagtacactta 600 ||||||||||| |||||| |||||||||||| ||||| ||| ||| |||||||||||||| Sbjct: 526 aagacaatgtgcgccatcgttggatcctttttcctggcacaaaaccgcgaagtacactta 585 Query: 601 cccacacaatcatggttgacgagac-agtcaaatctttgaccgtctttgtgttttgttga 659 ||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||| Sbjct: 586 cccacacaatcatggttgatgagacaaatcaaatctttgaccgtctgcgtgttttgttga 645 Query: 660 tcaatcatggttgataagacaa 681 | |||||||||||||||||||| Sbjct: 646 tgaatcatggttgataagacaa 667 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 487 ggtggatggattttttggttgactcctgttagccatgttaca 528 ||||| ||||| ||||| | |||||||||||||||||||||| Sbjct: 442 ggtgggtggatattttgatcgactcctgttagccatgttaca 483
>emb|Y10117.1|ZMSRP9 Z.mays mRNA for signal recognition particle subunit 9 Length = 765 Score = 329 bits (166), Expect = 8e-87 Identities = 274/310 (88%) Strand = Plus / Plus Query: 153 cgatggtgtacttcgactcctgggacgagttcgttgaccggtccgtgcagctcttccgcg 212 ||||||||||| | || || ||||| |||||||| || || ||||||||||||||||||| Sbjct: 110 cgatggtgtacgtggattcttgggaggagttcgtggagcgttccgtgcagctcttccgcg 169 Query: 213 ccgaccccatcaccactcgctattgcatgaagtaccggcactgcgacgggaagctcgtgc 272 |||||||| | |||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 170 gcgaccccaacgccacccgctacgtgatgaagtaccggcactgcgaggggaagctcgtgc 229 Query: 273 tcaaggtcaccgacgaccgcgagtgcttgaagtttaagacggatcaagctcaggatgcaa 332 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||| Sbjct: 230 tcaaggtcaccgacgaccgcgagtgcttgaagttcaagacagatcaagctcaagacgcaa 289 Query: 333 agaagatggaaaagctcaacaacatctttttcgctctcatgactcgtggacctgatgctg 392 |||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| || Sbjct: 290 agaagatggagaagctcaacaacatcttttttgctctcatgacacgtgggcctgatgttg 349 Query: 393 atataagcgaggtttcagggaaggaacaggcggagcagcagcaatcaaagaagggacggg 452 |||| || || |||||||||||||||||||| ||||| |||||| | ||||| || |||| Sbjct: 350 atatcagtgaagtttcagggaaggaacaggcagagcaacagcaagcgaagaaaggtcggg 409 Query: 453 gcaggaggca 462 | |||||||| Sbjct: 410 gaaggaggca 419
>gb|AY112444.1| Zea mays CL1900_1 mRNA sequence Length = 747 Score = 218 bits (110), Expect = 2e-53 Identities = 170/190 (89%) Strand = Plus / Plus Query: 153 cgatggtgtacttcgactcctgggacgagttcgttgaccggtccgtgcagctcttccgcg 212 ||||||||||| | || || ||||| |||||||| || |||||||||||||||||||||| Sbjct: 110 cgatggtgtacgtggattcttgggaggagttcgtggagcggtccgtgcagctcttccgcg 169 Query: 213 ccgaccccatcaccactcgctattgcatgaagtaccggcactgcgacgggaagctcgtgc 272 |||||||| | |||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 170 gcgaccccaacgccacccgctacgtgatgaagtaccggcactgcgaggggaagctcgtgc 229 Query: 273 tcaaggtcaccgacgaccgcgagtgcttgaagtttaagacggatcaagctcaggatgcaa 332 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||| Sbjct: 230 tcaaggtcaccgacgaccgcgagtgcttgaagttcaagacagatcaagctcaagacgcaa 289 Query: 333 agaagatgga 342 |||||||||| Sbjct: 290 agaagatgga 299 Score = 63.9 bits (32), Expect = 7e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 391 tgatataagcgaggtttcagggaaggaacaggcggagcagcagcaatcaaagaagggacg 450 |||||| || || |||||||||||||||||||| ||||| |||||| | ||||| || || Sbjct: 348 tgatatcagtgaagtttcagggaaggaacaggcagagcaacagcaaacgaagaaaggtcg 407 Query: 451 gggcaggaggca 462 ||| |||||||| Sbjct: 408 gggaaggaggca 419
>ref|NM_001063854.1| Oryza sativa (japonica cultivar-group) Os06g0257200 (Os06g0257200) mRNA, partial cds Length = 3411 Score = 208 bits (105), Expect = 2e-50 Identities = 156/173 (90%) Strand = Plus / Plus Query: 294 agtgcttgaagtttaagacggatcaagctcaggatgcaaagaagatggaaaagctcaaca 353 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 3048 agtgcttgaagtttaagacagatcaagctcaggatgcaaagaagatggaaaaactgaaca 3107 Query: 354 acatctttttcgctctcatgactcgtggacctgatgctgatataagcgaggtttcaggga 413 ||| ||||| |||||||||| | ||||||||||||||||||||| || ||||| |||| Sbjct: 3108 ccattttttttactctcatgacccatggacctgatgctgatataagtgatgtttcgggga 3167 Query: 414 aggaacaggcggagcagcagcaatcaaagaagggacggggcaggaggcagtag 466 |||||||||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 3168 aggaacaggcagaacaacagcaatcaaagaaaggccggggcaggaggcagtag 3220 Score = 83.8 bits (42), Expect = 8e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 242 aagtaccggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgag 295 ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct: 355 aagtaccggcactgcgaagggaagctcgtgctcaaggtcaccgacaaccacgag 408 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 141 gcgccgccgcagcgatggtgtacttcgactcctgggacgagttcgt 186 |||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 151 gcgccgccgcagcgatggtgtacttcgattcgtgggacgagttcgt 196
>dbj|AK068347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150F06, full insert sequence Length = 3414 Score = 208 bits (105), Expect = 2e-50 Identities = 156/173 (90%) Strand = Plus / Plus Query: 294 agtgcttgaagtttaagacggatcaagctcaggatgcaaagaagatggaaaagctcaaca 353 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 3050 agtgcttgaagtttaagacagatcaagctcaggatgcaaagaagatggaaaaactgaaca 3109 Query: 354 acatctttttcgctctcatgactcgtggacctgatgctgatataagcgaggtttcaggga 413 ||| ||||| |||||||||| | ||||||||||||||||||||| || ||||| |||| Sbjct: 3110 ccattttttttactctcatgacccatggacctgatgctgatataagtgatgtttcgggga 3169 Query: 414 aggaacaggcggagcagcagcaatcaaagaagggacggggcaggaggcagtag 466 |||||||||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 3170 aggaacaggcagaacaacagcaatcaaagaaaggccggggcaggaggcagtag 3222 Score = 83.8 bits (42), Expect = 8e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 242 aagtaccggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgag 295 ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct: 356 aagtaccggcactgcgaagggaagctcgtgctcaaggtcaccgacaaccacgag 409 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 141 gcgccgccgcagcgatggtgtacttcgactcctgggacgagttcgt 186 |||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 152 gcgccgccgcagcgatggtgtacttcgattcgtgggacgagttcgt 197
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 119 bits (60), Expect = 1e-23 Identities = 87/96 (90%) Strand = Plus / Minus Query: 294 agtgcttgaagtttaagacggatcaagctcaggatgcaaagaagatggaaaagctcaaca 353 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 8205828 agtgcttgaagtttaagacagatcaagctcaggatgcaaagaagatggaaaaactgaaca 8205769 Query: 354 acatctttttcgctctcatgactcgtggacctgatg 389 ||| ||||| |||||||||| | ||||||||||| Sbjct: 8205768 ccattttttttactctcatgacccatggacctgatg 8205733 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 389 gctgatataagcgaggtttcagggaaggaacaggcggagcagcagcaatcaaagaaggga 448 ||||||||||| || ||||| |||||||||||||| || || |||||||||||||| || Sbjct: 8205640 gctgatataagtgatgtttcggggaaggaacaggcagaacaacagcaatcaaagaaaggc 8205581 Query: 449 cggggcaggaggcagtag 466 |||||||||||||||||| Sbjct: 8205580 cggggcaggaggcagtag 8205563 Score = 83.8 bits (42), Expect = 8e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 242 aagtaccggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgag 295 ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct: 8208521 aagtaccggcactgcgaagggaagctcgtgctcaaggtcaccgacaaccacgag 8208468 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 141 gcgccgccgcagcgatggtgtacttcgactcctgggacgagttcgt 186 |||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 8208725 gcgccgccgcagcgatggtgtacttcgattcgtgggacgagttcgt 8208680
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 119 bits (60), Expect = 1e-23 Identities = 87/96 (90%) Strand = Plus / Minus Query: 294 agtgcttgaagtttaagacggatcaagctcaggatgcaaagaagatggaaaagctcaaca 353 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 98191 agtgcttgaagtttaagacagatcaagctcaggatgcaaagaagatggaaaaactgaaca 98132 Query: 354 acatctttttcgctctcatgactcgtggacctgatg 389 ||| ||||| |||||||||| | ||||||||||| Sbjct: 98131 ccattttttttactctcatgacccatggacctgatg 98096 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 389 gctgatataagcgaggtttcagggaaggaacaggcggagcagcagcaatcaaagaaggga 448 ||||||||||| || ||||| |||||||||||||| || || |||||||||||||| || Sbjct: 98003 gctgatataagtgatgtttcggggaaggaacaggcagaacaacagcaatcaaagaaaggc 97944 Query: 449 cggggcaggaggcagtag 466 |||||||||||||||||| Sbjct: 97943 cggggcaggaggcagtag 97926 Score = 83.8 bits (42), Expect = 8e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 242 aagtaccggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgag 295 ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct: 100884 aagtaccggcactgcgaagggaagctcgtgctcaaggtcaccgacaaccacgag 100831 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 141 gcgccgccgcagcgatggtgtacttcgactcctgggacgagttcgt 186 |||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 101088 gcgccgccgcagcgatggtgtacttcgattcgtgggacgagttcgt 101043
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 83.8 bits (42), Expect = 8e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 242 aagtaccggcactgcgacgggaagctcgtgctcaaggtcaccgacgaccgcgag 295 ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct: 2026 aagtaccggcactgcgaagggaagctcgtgctcaaggtcaccgacaaccacgag 1973 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 141 gcgccgccgcagcgatggtgtacttcgactcctgggacgagttcgt 186 |||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 2230 gcgccgccgcagcgatggtgtacttcgattcgtgggacgagttcgt 2185
>gb|AC189378.1| Brassica rapa subsp. pekinensis clone KBrB049H14, complete sequence Length = 110667 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 aagaagatggaaaagctcaac 352 ||||||||||||||||||||| Sbjct: 92904 aagaagatggaaaagctcaac 92884
>emb|AL954143.10| Zebrafish DNA sequence from clone CH211-206A7 in linkage group 19, complete sequence Length = 167732 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 561 ttggatccttttcctggtacagaac 585 |||||||||||||||| |||||||| Sbjct: 4739 ttggatccttttcctgttacagaac 4763
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gcctccggccagcgccgccgc 150 ||||||||||||||||||||| Sbjct: 27521 gcctccggccagcgccgccgc 27501
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 gcggagcagcagcaatcaaag 442 ||||||||||||||||||||| Sbjct: 1981938 gcggagcagcagcaatcaaag 1981918
>gb|AC025809.5| Homo sapiens chromosome 19 clone CTC-439O9, complete sequence Length = 241424 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 ctttgtgttttgttgatcaat 664 ||||||||||||||||||||| Sbjct: 18514 ctttgtgttttgttgatcaat 18534
>dbj|AK174415.1| Ciona intestinalis cDNA, clone:cicl061l21, full insert sequence Length = 2356 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 644 ctttgtgttttgttgatcaatcatg 668 |||||||||||| |||||||||||| Sbjct: 1668 ctttgtgttttgatgatcaatcatg 1644
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 gcggagcagcagcaatcaaag 442 ||||||||||||||||||||| Sbjct: 2301177 gcggagcagcagcaatcaaag 2301197 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 108,410,791 Number of extensions: 5579130 Number of successful extensions: 108999 Number of sequences better than 10.0: 15 Number of HSP's gapped: 108995 Number of HSP's successfully gapped: 29 Length of query: 702 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 680 Effective length of database: 18,508,616,841 Effective search space: 12585859451880 Effective search space used: 12585859451880 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
