ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf40i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001067594.1| Oryza sativa (japonica cultivar-group) Os08g... 94 1e-15
2dbj|AK121633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-15
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 70 2e-08
4dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic D... 70 2e-08
5dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 70 2e-08
6gb|AF320674.1| Mecodema crenicolle cytochrome oxidase subunit I ... 44 0.95
7emb|AL133454.6|CNS01DV5 Human chromosome 14 DNA sequence BAC R-5... 44 0.95
8ref|XM_001233936.1| PREDICTED: Gallus gallus family with sequenc... 42 3.7
9gb|DQ149023.1| Bacteriophage Syn9, complete genome 42 3.7
10gb|AC189449.1| Brassica rapa subsp. pekinensis clone KBrB071M14,... 42 3.7
11gb|BT026214.1| Bos taurus leucine zipper protein 5 (LUZP5), NotI... 42 3.7
12ref|XM_001061947.1| PREDICTED: Rattus norvegicus spermatogenesis... 42 3.7
13ref|XM_001062003.1| PREDICTED: Rattus norvegicus spermatogenesis... 42 3.7
14ref|XM_217030.4| PREDICTED: Rattus norvegicus spermatogenesis as... 42 3.7
15ref|XM_594801.2| PREDICTED: Bos taurus similar to leucine zipper... 42 3.7
16gb|BC072579.1| Mus musculus spermatogenesis associated, serine-r... 42 3.7
17gb|BC023432.1| Mus musculus spermatogenesis associated, serine-r... 42 3.7
18gb|AC123055.3| Mus musculus BAC clone RP24-267D17 from chromosom... 42 3.7
19gb|AC122347.4| Mus musculus BAC clone RP23-368O1 from chromosome... 42 3.7
20gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 3.7
21gb|AC158590.3| Mus musculus chromosome 5, clone RP24-388K6, comp... 42 3.7
22gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 42 3.7
23dbj|AK159335.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 42 3.7
24dbj|AK167788.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-... 42 3.7
25dbj|AK171266.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 3.7
26dbj|AK048720.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 42 3.7
27gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, com... 42 3.7
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.7
29dbj|AK215485.1| Mus musculus cDNA, clone:Y2G0135D11, strand:plus... 42 3.7
30gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 42 3.7
31emb|AL590997.13| Mouse DNA sequence from clone RP23-132J20 on ch... 42 3.7
32gb|AC135237.6| Mus musculus BAC clone RP23-306F11 from chromosom... 42 3.7
33ref|NM_139140.1| Mus musculus spermatogenesis associated, serine... 42 3.7 
>ref|NM_001067594.1| Oryza sativa (japonica cultivar-group) Os08g0162500 (Os08g0162500)
           mRNA, complete cds
          Length = 850
 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                       
Query: 458 ttgctactgcccttgacaagatagatcagtttgtcgaagaacaaactctggacgtattat 517
           ||||| |||||||||| ||||||||||||||||| ||||||||||  ||||| ||  | |
Sbjct: 358 ttgctgctgcccttgaaaagatagatcagtttgttgaagaacaaaagctggatgtgctgt 417

                                      
Query: 518 cttcagacaagactagcattgaagaca 544
           ||||||||||||||| |||||||||||
Sbjct: 418 cttcagacaagactaacattgaagaca 444



 Score = 50.1 bits (25), Expect = 0.015
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 622 aacaatgccatgaaggcccgaattgaacacatgaagcaaga 662
           ||||||||||||||||| |||||||||| | ||||| ||||
Sbjct: 522 aacaatgccatgaaggctcgaattgaactcttgaagaaaga 562
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>dbj|AK121633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M07, full
           insert sequence
          Length = 849

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                       
Query: 458 ttgctactgcccttgacaagatagatcagtttgtcgaagaacaaactctggacgtattat 517
           ||||| |||||||||| ||||||||||||||||| ||||||||||  ||||| ||  | |
Sbjct: 357 ttgctgctgcccttgaaaagatagatcagtttgttgaagaacaaaagctggatgtgctgt 416

                                      
Query: 518 cttcagacaagactagcattgaagaca 544
           ||||||||||||||| |||||||||||
Sbjct: 417 cttcagacaagactaacattgaagaca 443



 Score = 50.1 bits (25), Expect = 0.015
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 622 aacaatgccatgaaggcccgaattgaacacatgaagcaaga 662
           ||||||||||||||||| |||||||||| | ||||| ||||
Sbjct: 521 aacaatgccatgaaggctcgaattgaactcttgaagaaaga 561
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                           
Query: 458     ttgctactgcccttgacaagatagatcagtttgtcgaagaacaaactctggacgtattat 517
               ||||| |||||||||| ||||||||||||||||| ||||||||||  ||||| ||  | |
Sbjct: 3685885 ttgctgctgcccttgaaaagatagatcagtttgttgaagaacaaaagctggatgtgctgt 3685944

                          
Query: 518     cttcagacaag 528
               |||||||||||
Sbjct: 3685945 cttcagacaag 3685955



 Score = 50.1 bits (25), Expect = 0.015
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 622     aacaatgccatgaaggcccgaattgaacacatgaagcaaga 662
               ||||||||||||||||| |||||||||| | ||||| ||||
Sbjct: 3686482 aacaatgccatgaaggctcgaattgaactcttgaagaaaga 3686522
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>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ9990_A01
          Length = 101684

 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                        
Query: 458  ttgctactgcccttgacaagatagatcagtttgtcgaagaacaaactctggacgtattat 517
            ||||| |||||||||| ||||||||||||||||| ||||||||||  ||||| ||  | |
Sbjct: 9382 ttgctgctgcccttgaaaagatagatcagtttgttgaagaacaaaagctggatgtgctgt 9441

                       
Query: 518  cttcagacaag 528
            |||||||||||
Sbjct: 9442 cttcagacaag 9452



 Score = 50.1 bits (25), Expect = 0.015
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 622   aacaatgccatgaaggcccgaattgaacacatgaagcaaga 662
             ||||||||||||||||| |||||||||| | ||||| ||||
Sbjct: 9979  aacaatgccatgaaggctcgaattgaactcttgaagaaaga 10019
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0577B11
          Length = 180355

 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                          
Query: 458    ttgctactgcccttgacaagatagatcagtttgtcgaagaacaaactctggacgtattat 517
              ||||| |||||||||| ||||||||||||||||| ||||||||||  ||||| ||  | |
Sbjct: 164391 ttgctgctgcccttgaaaagatagatcagtttgttgaagaacaaaagctggatgtgctgt 164450

                         
Query: 518    cttcagacaag 528
              |||||||||||
Sbjct: 164451 cttcagacaag 164461



 Score = 50.1 bits (25), Expect = 0.015
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 622    aacaatgccatgaaggcccgaattgaacacatgaagcaaga 662
              ||||||||||||||||| |||||||||| | ||||| ||||
Sbjct: 164988 aacaatgccatgaaggctcgaattgaactcttgaagaaaga 165028
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>gb|AF320674.1| Mecodema crenicolle cytochrome oxidase subunit I (COI) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 570

 Score = 44.1 bits (22), Expect = 0.95
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 578 aaattgaacttttaaaaggttt 599
           ||||||||||||||||||||||
Sbjct: 424 aaattgaacttttaaaaggttt 403
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>emb|AL133454.6|CNS01DV5 Human chromosome 14 DNA sequence BAC R-580E16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165159

 Score = 44.1 bits (22), Expect = 0.95
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 545    tcaaagaaagtacatcaaaaaagaag 570
              |||||||||| |||||||||||||||
Sbjct: 116828 tcaaagaaagaacatcaaaaaagaag 116853
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>ref|XM_001233936.1| PREDICTED: Gallus gallus family with sequence similarity 62 (C2
            domain containing) member B (FAM62B), mRNA
          Length = 3960

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 551  aaagtacatcaaaaaagaagaggga 575
            |||| ||||||||||||||||||||
Sbjct: 996  aaagcacatcaaaaaagaagaggga 1020
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>gb|DQ149023.1| Bacteriophage Syn9, complete genome
          Length = 176847

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 709    atgatacaagagattttctca 729
              |||||||||||||||||||||
Sbjct: 121295 atgatacaagagattttctca 121275
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>gb|AC189449.1| Brassica rapa subsp. pekinensis clone KBrB071M14, complete sequence
          Length = 36889

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 683   gaaaatcaagcaagaggagga 703
             |||||||||||||||||||||
Sbjct: 13682 gaaaatcaagcaagaggagga 13702
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>gb|BT026214.1| Bos taurus leucine zipper protein 5 (LUZP5), NotI truncated, mRNA,
           incomplete 5' and 3' cds
          Length = 1155

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 555 tacatcaaaaaagaagaggga 575
           |||||||||||||||||||||
Sbjct: 167 tacatcaaaaaagaagaggga 187
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>ref|XM_001061947.1| PREDICTED: Rattus norvegicus spermatogenesis associated, serine-rich
            2 (predicted), transcript variant 1 (Spats2_predicted),
            mRNA
          Length = 2889

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1330 aagctgaagcaatggaaatct 1350
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>ref|XM_001062003.1| PREDICTED: Rattus norvegicus spermatogenesis associated, serine-rich
            2 (predicted), transcript variant 2 (Spats2_predicted),
            mRNA
          Length = 2922

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1330 aagctgaagcaatggaaatct 1350
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>ref|XM_217030.4| PREDICTED: Rattus norvegicus spermatogenesis associated, serine-rich
            2 (predicted) (Spats2_predicted), mRNA
          Length = 2922

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1330 aagctgaagcaatggaaatct 1350
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>ref|XM_594801.2| PREDICTED: Bos taurus similar to leucine zipper protein 5
           (LOC516644), mRNA
          Length = 3350

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 555 tacatcaaaaaagaagaggga 575
           |||||||||||||||||||||
Sbjct: 786 tacatcaaaaaagaagaggga 806
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>gb|BC072579.1| Mus musculus spermatogenesis associated, serine-rich 2, mRNA (cDNA
            clone IMAGE:6416630)
          Length = 3084

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1469 aagctgaagcaatggaaatct 1489
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>gb|BC023432.1| Mus musculus spermatogenesis associated, serine-rich 2, mRNA (cDNA
           clone MGC:32347 IMAGE:5029821), complete cds
          Length = 2462

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 732 aagctgaagcaatggaaatct 752
           |||||||||||||||||||||
Sbjct: 852 aagctgaagcaatggaaatct 872
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>gb|AC123055.3| Mus musculus BAC clone RP24-267D17 from chromosome 3, complete sequence
          Length = 187323

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 707   caatgatacaagagattttct 727
             |||||||||||||||||||||
Sbjct: 53435 caatgatacaagagattttct 53455
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>gb|AC122347.4| Mus musculus BAC clone RP23-368O1 from chromosome 5, complete sequence
          Length = 191186

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 563   aaaagaagagggatgaaattg 583
             |||||||||||||||||||||
Sbjct: 86987 aaaagaagagggatgaaattg 87007
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>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 578   aaattgaacttttaaaaggtt 598
             |||||||||||||||||||||
Sbjct: 29178 aaattgaacttttaaaaggtt 29198
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>gb|AC158590.3| Mus musculus chromosome 5, clone RP24-388K6, complete sequence
          Length = 186514

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 563   aaaagaagagggatgaaattg 583
             |||||||||||||||||||||
Sbjct: 42976 aaaagaagagggatgaaattg 42996
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 578    aaattgaacttttaaaaggtt 598
              |||||||||||||||||||||
Sbjct: 990660 aaattgaacttttaaaaggtt 990680
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>dbj|AK159335.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420016J22 product:spermatogenesis
            associated, serine-rich 2, full insert sequence
          Length = 2893

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1297 aagctgaagcaatggaaatct 1317
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>dbj|AK167788.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730024P14 product:spermatogenesis
           associated, serine-rich 2, full insert sequence
          Length = 2483

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 732 aagctgaagcaatggaaatct 752
           |||||||||||||||||||||
Sbjct: 880 aagctgaagcaatggaaatct 900
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>dbj|AK171266.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630321B21
           product:spermatogenesis associated, serine-rich 2, full
           insert sequence
          Length = 2036

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 732 aagctgaagcaatggaaatct 752
           |||||||||||||||||||||
Sbjct: 958 aagctgaagcaatggaaatct 978
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>dbj|AK048720.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230021J06 product:hypothetical
            protein, full insert sequence
          Length = 2150

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1244 aagctgaagcaatggaaatct 1264
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>gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, complete sequence
          Length = 180882

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 548   aagaaagtacatcaaaaaagaagag 572
             |||||||||||| ||||||||||||
Sbjct: 86965 aagaaagtacatgaaaaaagaagag 86989
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 578     aaattgaacttttaaaaggtt 598
               |||||||||||||||||||||
Sbjct: 5322225 aaattgaacttttaaaaggtt 5322245
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>dbj|AK215485.1| Mus musculus cDNA, clone:Y2G0135D11, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000063517, based on BLAT search
          Length = 246

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 732 aagctgaagcaatggaaatct 752
           |||||||||||||||||||||
Sbjct: 216 aagctgaagcaatggaaatct 236
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>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 578   aaattgaacttttaaaaggtt 598
             |||||||||||||||||||||
Sbjct: 44115 aaattgaacttttaaaaggtt 44135
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>emb|AL590997.13| Mouse DNA sequence from clone RP23-132J20 on chromosome 11, complete
             sequence
          Length = 200602

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 569   agagggatgaaattgaacttt 589
             |||||||||||||||||||||
Sbjct: 37756 agagggatgaaattgaacttt 37736
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>gb|AC135237.6| Mus musculus BAC clone RP23-306F11 from chromosome 3, complete sequence
          Length = 199436

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 707    caatgatacaagagattttct 727
              |||||||||||||||||||||
Sbjct: 181498 caatgatacaagagattttct 181518
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>ref|NM_139140.1| Mus musculus spermatogenesis associated, serine-rich 2 (Spats2), mRNA
 dbj|AB079132.1| Mus musculus p59 mRNA for hypothetical protein, complete cds
          Length = 2075

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 732  aagctgaagcaatggaaatct 752
            |||||||||||||||||||||
Sbjct: 1202 aagctgaagcaatggaaatct 1222


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 175,392,195
Number of extensions: 9164450
Number of successful extensions: 175530
Number of sequences better than 10.0: 33
Number of HSP's gapped: 175530
Number of HSP's successfully gapped: 38
Length of query: 991
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 968
Effective length of database: 18,503,978,556
Effective search space: 17911851242208
Effective search space used: 17911851242208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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