ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf46n10 |
|---|---|
| Clone Library Name | barley_pub |
>Q39255:SKP1A_ARATH SKP1-like protein 1A - Arabidopsis thaliana (Mouse-ear cress)| Length = 160 Score = 96.3 bits (238), Expect = 5e-19 Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 15/150 (10%) Frame = +1 Query: 103 ATKTFLVQSEDGMNFVVSDLEASQSWVIDG--DTVCYDGEPIRVDVGGKILSKVLHYCKK 276 + K +++S DG +F V + A +S I + C D +V KIL+KV+ YCK+ Sbjct: 2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61 Query: 277 H-------------AYSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQT 417 H A ++ DL AWDA+F++ +D TL++LI+A++ L I+ LL LTCQT Sbjct: 62 HVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQT 120 Query: 418 LANKIKGKSPPEICDILNIRGVFTPELHQE 507 +A+ IKGK+P EI NI+ FTPE +E Sbjct: 121 VADMIKGKTPEEIRTTFNIKNDFTPEEEEE 150
>Q9FHW7:SKP1B_ARATH SKP1-like protein 1B - Arabidopsis thaliana (Mouse-ear cress)| Length = 171 Score = 94.0 bits (232), Expect = 2e-18 Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 25/154 (16%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVIDG--DTVCYDGEPIRVDVGGKILSKVLHYCKKHAY--- 285 ++S DG NF + + A +S I + C D +V KILSKV+ YCK+H Sbjct: 9 LKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAE 68 Query: 286 --------------------SNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLAL 405 S+ DL WD+EF++ +D TL+DLI+A++ L I+GLL L Sbjct: 69 KSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANYLNIKGLLDL 127 Query: 406 TCQTLANKIKGKSPPEICDILNIRGVFTPELHQE 507 TCQT+A+ IKGK+P EI NI+ FTPE +E Sbjct: 128 TCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 161
>Q6PEC4:SKP1_RAT S-phase kinase-associated protein 1A - Rattus norvegicus (Rat)| Length = 163 Score = 75.1 bits (183), Expect = 1e-12 Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 19/147 (12%) Frame = +1 Query: 112 TFLVQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYC 270 T +QS DG F V A QS I G D +P+ + +V IL KV+ +C Sbjct: 3 TIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62 Query: 271 KKHA------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQ 414 H D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+ Sbjct: 63 THHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCK 121 Query: 415 TLANKIKGKSPPEICDILNIRGVFTPE 495 T+AN IKGK+P EI NI+ FT E Sbjct: 122 TVANMIKGKTPEEIRKTFNIKNDFTEE 148
>Q9WTX5:SKP1_MOUSE S-phase kinase-associated protein 1A - Mus musculus (Mouse)| Length = 163 Score = 75.1 bits (183), Expect = 1e-12 Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 19/147 (12%) Frame = +1 Query: 112 TFLVQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYC 270 T +QS DG F V A QS I G D +P+ + +V IL KV+ +C Sbjct: 3 TIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 62 Query: 271 KKHA------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQ 414 H D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+ Sbjct: 63 THHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCK 121 Query: 415 TLANKIKGKSPPEICDILNIRGVFTPE 495 T+AN IKGK+P EI NI+ FT E Sbjct: 122 TVANMIKGKTPEEIRKTFNIKNDFTEE 148
>Q71U00:SKP1_XENLA S-phase kinase-associated protein 1A - Xenopus laevis (African| clawed frog) Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>Q5R512:SKP1_PONPY S-phase kinase-associated protein 1A - Pongo pygmaeus (Orangutan)| Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>Q4R5B9:SKP1_MACFA S-phase kinase-associated protein 1A - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>P63208:SKP1_HUMAN S-phase kinase-associated protein 1A - Homo sapiens (Human)| Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>Q5ZKF5:SKP1_CHICK S-phase kinase-associated protein 1A - Gallus gallus (Chicken)| Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>P63209:SKP1_CAVPO S-phase kinase-associated protein 1A - Cavia porcellus (Guinea pig)| Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>Q3ZCF3:SKP1_BOVIN S-phase kinase-associated protein 1A - Bos taurus (Bovine)| Length = 163 Score = 73.9 bits (180), Expect = 3e-12 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = +1 Query: 121 VQSEDGMNFVVSDLEASQSWVID------GDTVCYDGEPIRV-DVGGKILSKVLHYCKKH 279 +QS DG F V A QS I G D +P+ + +V IL KV+ +C H Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65 Query: 280 A------------YSNVCDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLA 423 D+ WD EF++ +D TL++LI+A++ L I+GLL +TC+T+A Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVA 124 Query: 424 NKIKGKSPPEICDILNIRGVFTPE 495 N IKGK+P EI NI+ FT E Sbjct: 125 NMIKGKTPEEIRKTFNIKNDFTEE 148
>Q9Y709:SKP1_SCHPO Suppressor of kinetochore protein 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 161 Score = 70.9 bits (172), Expect = 2e-11 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 17/144 (11%) Frame = +1 Query: 127 SEDGMNFVVSDLEASQSWVIDG--DTVCYDGEPIRV-DVGGKILSKVLHYCKKHA---YS 288 S D FVV L A +S +I + V PI + +V +L KVL +C+ H YS Sbjct: 8 SSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYS 67 Query: 289 NV-----------CDLSAWDAEFVRGLDLETLYDLIVASDELKIEGLLALTCQTLANKIK 435 D+ WD +F+ +D E L+++++AS+ L I+ LL C+T+AN I+ Sbjct: 68 GTEEESDIRLKKSTDIDEWDRKFM-AVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIR 126 Query: 436 GKSPPEICDILNIRGVFTPELHQE 507 GKSP +I NI FTPE ++ Sbjct: 127 GKSPEDIRKTFNIPNDFTPEEEEQ 150
>P52285:FP21_DICDI Glycoprotein FP21 precursor - Dictyostelium discoideum (Slime mold)| Length = 162 Score = 69.7 bits (169), Expect = 5e-11 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 12/105 (11%) Frame = +1 Query: 229 DVGGKILSKVLHYCKKHAY------------SNVCDLSAWDAEFVRGLDLETLYDLIVAS 372 +V IL KVL YC+ H + D+ +D +F + +D TL++LI+A+ Sbjct: 45 NVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCK-VDQPTLFELILAA 103 Query: 373 DELKIEGLLALTCQTLANKIKGKSPPEICDILNIRGVFTPELHQE 507 + L I+ LL +TC+T+AN I+GK+P EI I NI+ FTPE ++ Sbjct: 104 NYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQ 148
>P52286:SKP1_YEAST Suppressor of kinetochore protein 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 194 Score = 61.6 bits (148), Expect = 1e-08 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 11/100 (11%) Frame = +1 Query: 229 DVGGKILSKVLHYCKKHAYSNVCD-----------LSAWDAEFVRGLDLETLYDLIVASD 375 +V +L KV+ + + H SN D + +WD EF++ +D E LY++I+A++ Sbjct: 81 NVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLK-VDQEMLYEIILAAN 139 Query: 376 ELKIEGLLALTCQTLANKIKGKSPPEICDILNIRGVFTPE 495 L I+ LL C+ +A I+G+SP EI NI FTPE Sbjct: 140 YLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPE 179
>Q8K298:ANLN_MOUSE Actin-binding protein anillin - Mus musculus (Mouse)| Length = 1121 Score = 32.7 bits (73), Expect = 6.5 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Frame = -3 Query: 1360 PNMSTGNPTS-DSLTFKETTLTHDPTTDSHVGVLLLSGGPREKLAANKGNDHKSKPTYSV 1184 P ST N S D+LTF T HD + D + + + S ++ + G D K K + S Sbjct: 844 PLASTANSLSGDALTFPTTFTLHDVSNDFEINIEVYSLVQKKD---SLGPDKKKKASKSK 900 Query: 1183 CIQ*RPYHKCKSISSRSDPHGA*NSAAWGAPAKKTA 1076 I P SI+S+S H + ++ G A +T+ Sbjct: 901 AI--TPKRLLTSITSKSSLHSSVMASPGGLGAVRTS 934
>O50001:PRU1_PRUAR Major allergen Pru ar 1 - Prunus armeniaca (Apricot)| Length = 160 Score = 32.7 bits (73), Expect = 6.5 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%) Frame = +1 Query: 31 TAARGKK--EDDGGGGVRKKMAAEEGATKTFLVQSEDGMNFVVSDLEASQSWVIDGD--- 195 TA +G + E DGG G KK+ EG+ ++ DG++ D + +I+GD Sbjct: 37 TAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGID---KDNLSYSYTLIEGDALS 93 Query: 196 ----TVCYDGEPIRVDVGGKILSKVLHYCKK 276 + YD + + GG I+ HY K Sbjct: 94 DVIENIAYDIKLVASPDGGSIVKTTSHYHTK 124
>Q9JMS5:YUAO_ECOLI Uncharacterized protein yuaO precursor - Escherichia coli| Length = 1758 Score = 32.3 bits (72), Expect = 8.5 Identities = 21/88 (23%), Positives = 38/88 (43%) Frame = +1 Query: 1 GSVRLSNQVRTAARGKKEDDGGGGVRKKMAAEEGATKTFLVQSEDGMNFVVSDLEASQSW 180 G + + + R ARG DG V K+ + + ++ +SD AS Sbjct: 1261 GQINVYDGTRLDARGNDAVDGILNVSKEAQVDFNGYSQHMTGIDNKGMIYLSDGSASSDV 1320 Query: 181 VIDGDTVCYDGEPIRVDVGGKILSKVLH 264 +D D V +DG ++ + G+ + V+H Sbjct: 1321 YLDKDYVAHDGSGVQFGIFGQKEADVMH 1348 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 398,508,644 Number of extensions: 9205803 Number of successful extensions: 22338 Number of sequences better than 10.0: 17 Number of HSP's gapped: 22314 Number of HSP's successfully gapped: 17 Length of query: 735 Length of database: 100,686,439 Length adjustment: 121 Effective length of query: 614 Effective length of database: 67,496,744 Effective search space: 41443000816 Effective search space used: 41443000816 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
