ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf40h06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001052780.1| Oryza sativa (japonica cultivar-group) Os02g0205000 (Os02g0205000) mRNA, complete cds Length = 1128 Score = 391 bits (197), Expect = e-105 Identities = 329/373 (88%) Strand = Plus / Plus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaatatcttgaacaaa 439 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 435 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaatatcttgaacaag 494 Query: 440 gaggcggttgataaggtccactcggagagggagattcctgatgtgcagcctggatgcatc 499 ||||| ||||| ||||||| ||| || |||||||||||||||||||||||||| || Sbjct: 495 gaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcagcctggatgtatt 554 Query: 500 attcagatgagattgcaagttcctgagaacaaaaggcgagagtctacactaaaagggatt 559 || || |||||||||||||||||||||||||| | || |||||||| | ||||| ||| Sbjct: 555 atccaaatgagattgcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcatt 614 Query: 560 gtgatagcaaggcgcaatgctgggataaatacaaccttcagattgcggagattagtagct 619 || |||| ||| || ||||||||||| |||||||| |||||| |||| |||||||||||| Sbjct: 615 gtcataggaagacgtaatgctgggatcaatacaactttcagactgcgtagattagtagct 674 Query: 620 ggtgtgggtgtcgaatctgtctttccactttactcgccaaacatcaaagaaatgaagatc 679 ||||| || ||||| |||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct: 675 ggtgttggagtcgagtctgtctttccactttactctccaaacatcaaggaaatcaaggtc 734 Query: 680 ttggacaggaagaaagtgaggagagctaagctgtattacctgagagacaggatgaatgca 739 ||||||||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||| Sbjct: 735 ttggacaggaagaaagtcaggagagcaaagttgtattacctgcgggacaggatgaatgca 794 Query: 740 cttaaaaaatgag 752 ||||| ||||||| Sbjct: 795 cttaagaaatgag 807
>dbj|AK073514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040E14, full insert sequence Length = 1129 Score = 391 bits (197), Expect = e-105 Identities = 329/373 (88%) Strand = Plus / Plus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaatatcttgaacaaa 439 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 436 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaatatcttgaacaag 495 Query: 440 gaggcggttgataaggtccactcggagagggagattcctgatgtgcagcctggatgcatc 499 ||||| ||||| ||||||| ||| || |||||||||||||||||||||||||| || Sbjct: 496 gaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcagcctggatgtatt 555 Query: 500 attcagatgagattgcaagttcctgagaacaaaaggcgagagtctacactaaaagggatt 559 || || |||||||||||||||||||||||||| | || |||||||| | ||||| ||| Sbjct: 556 atccaaatgagattgcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcatt 615 Query: 560 gtgatagcaaggcgcaatgctgggataaatacaaccttcagattgcggagattagtagct 619 || |||| ||| || ||||||||||| |||||||| |||||| |||| |||||||||||| Sbjct: 616 gtcataggaagacgtaatgctgggatcaatacaactttcagactgcgtagattagtagct 675 Query: 620 ggtgtgggtgtcgaatctgtctttccactttactcgccaaacatcaaagaaatgaagatc 679 ||||| || ||||| |||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct: 676 ggtgttggagtcgagtctgtctttccactttactctccaaacatcaaggaaatcaaggtc 735 Query: 680 ttggacaggaagaaagtgaggagagctaagctgtattacctgagagacaggatgaatgca 739 ||||||||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||| Sbjct: 736 ttggacaggaagaaagtcaggagagcaaagttgtattacctgcgggacaggatgaatgca 795 Query: 740 cttaaaaaatgag 752 ||||| ||||||| Sbjct: 796 cttaagaaatgag 808
>dbj|AK060003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-A07, full insert sequence Length = 986 Score = 391 bits (197), Expect = e-105 Identities = 329/373 (88%) Strand = Plus / Plus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaatatcttgaacaaa 439 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 431 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaatatcttgaacaag 490 Query: 440 gaggcggttgataaggtccactcggagagggagattcctgatgtgcagcctggatgcatc 499 ||||| ||||| ||||||| ||| || |||||||||||||||||||||||||| || Sbjct: 491 gaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcagcctggatgtatt 550 Query: 500 attcagatgagattgcaagttcctgagaacaaaaggcgagagtctacactaaaagggatt 559 || || |||||||||||||||||||||||||| | || |||||||| | ||||| ||| Sbjct: 551 atccaaatgagattgcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcatt 610 Query: 560 gtgatagcaaggcgcaatgctgggataaatacaaccttcagattgcggagattagtagct 619 || |||| ||| || ||||||||||| |||||||| |||||| |||| |||||||||||| Sbjct: 611 gtcataggaagacgtaatgctgggatcaatacaactttcagactgcgtagattagtagct 670 Query: 620 ggtgtgggtgtcgaatctgtctttccactttactcgccaaacatcaaagaaatgaagatc 679 ||||| || ||||| |||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct: 671 ggtgttggagtcgagtctgtctttccactttactctccaaacatcaaggaaatcaaggtc 730 Query: 680 ttggacaggaagaaagtgaggagagctaagctgtattacctgagagacaggatgaatgca 739 ||||||||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||| Sbjct: 731 ttggacaggaagaaagtcaggagagcaaagttgtattacctgcgggacaggatgaatgca 790 Query: 740 cttaaaaaatgag 752 ||||| ||||||| Sbjct: 791 cttaagaaatgag 803
>gb|AY109347.1| Zea mays CL10949_1 mRNA sequence Length = 1525 Score = 329 bits (166), Expect = 1e-86 Identities = 238/264 (90%) Strand = Plus / Minus Query: 343 ggacgattccagctcccctgcggttgagcaccccccacgcatcaagttcaagaggcctga 402 ||||||||||| |||||||||||||||||| |||||||||||||||||||| || Sbjct: 1156 ggacgattccacctcccctgcggttgagcannnnnngcgcatcaagttcaagaggcccga 1097 Query: 403 caagactgccaggcacattatgaatatcttgaacaaagaggcggttgataaggtccactc 462 |||||| ||||||||||||||||||||| | |||||||||||||| || ||||||| ||| Sbjct: 1096 caagaccgccaggcacattatgaatatcctaaacaaagaggcggtcgaaaaggtccgctc 1037 Query: 463 ggagagggagattcctgatgtgcagcctggatgcatcattcagatgagattgcaagttcc 522 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 ggaaagggagattcctgatgtgcagcctggatgcatcattcagatgagattgcaagttcc 977 Query: 523 tgagaacaaaaggcgagagtctacactaaaagggattgtgatagcaaggcgcaatgctgg 582 |||||||||| |||| ||||| || || || ||||||||||||| ||||||||| || || Sbjct: 976 tgagaacaaacggcgtgagtcgacgctgaaggggattgtgataggaaggcgcaacgccgg 917 Query: 583 gataaatacaaccttcagattgcg 606 ||| |||||||||||||||||||| Sbjct: 916 gatcaatacaaccttcagattgcg 893 Score = 178 bits (90), Expect = 3e-41 Identities = 111/118 (94%) Strand = Plus / Minus Query: 635 tctgtctttccactttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaa 694 |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 864 tctgtctttccactttactcgccaaacatcaaagaaatcaaggtattggacaggaagaaa 805 Query: 695 gtgaggagagctaagctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 || |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| Sbjct: 804 gtcaggagagctaagctgtattacctgagggacaggatgaacgcacttagaaaatgag 747 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Minus Query: 70 caggatgcaatctttgctccggaatgtctgccgagccggaagccgcggggctgcggcgag 129 ||||||||||| |||| |||||||||||||||||||||||||||| || || |||||||| Sbjct: 1468 caggatgcaatgtttggtccggaatgtctgccgagccggaagccgtggagcggcggcgag 1409 Query: 130 gctcctg 136 ||||||| Sbjct: 1408 gctcctg 1402
>emb|CT831978.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI017P20, full insert sequence Length = 686 Score = 242 bits (122), Expect = 2e-60 Identities = 221/254 (87%) Strand = Plus / Plus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaatatcttgaacaaa 439 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 433 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaatatcttgaacaag 492 Query: 440 gaggcggttgataaggtccactcggagagggagattcctgatgtgcagcctggatgcatc 499 ||||| ||||| ||||||| ||| || |||||||||||||||||||||||||| || Sbjct: 493 gaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcagcctggatgtatt 552 Query: 500 attcagatgagattgcaagttcctgagaacaaaaggcgagagtctacactaaaagggatt 559 || || |||||||||||||||||||||||||| | || |||||||| | ||||| ||| Sbjct: 553 atccaaatgagattgcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcatt 612 Query: 560 gtgatagcaaggcgcaatgctgggataaatacaaccttcagattgcggagattagtagct 619 || |||| ||| || ||||||||||| |||||||| |||||| |||| |||||||||||| Sbjct: 613 gtcataggaagacgtaatgctgggatcaatacaactttcagactgcgtagattagtagct 672 Query: 620 ggtgtgggtgtcga 633 ||||| || ||||| Sbjct: 673 ggtgttggagtcga 686
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 135 bits (68), Expect = 4e-28 Identities = 95/104 (91%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || Sbjct: 19180204 ttactctccaaacatcaaagaaatcaaggtcttggacaggaagaaagtcaggagagcaaa 19180263 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 19180264 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 19180307 Score = 133 bits (67), Expect = 1e-27 Identities = 118/135 (87%) Strand = Plus / Plus Query: 514 gcaagttcctgagaacaaaaggcgagagtctacactaaaagggattgtgatagcaaggcg 573 ||||||||||||||| || |||| |||||||| | ||||| ||||| |||||||| || Sbjct: 19179160 gcaagttcctgagaagaagcggcgcgagtctacgttgaaaggcattgtcatagcaagacg 19179219 Query: 574 caatgctgggataaatacaaccttcagattgcggagattagtagctggtgtgggtgtcga 633 |||||||||||| |||||||| |||||| |||| ||||||||||||||||| || ||||| Sbjct: 19179220 caatgctgggatcaatacaactttcagactgcgtagattagtagctggtgttggagtcga 19179279 Query: 634 atctgtctttccact 648 |||||||||||||| Sbjct: 19179280 gtctgtctttccact 19179294 Score = 127 bits (64), Expect = 9e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| || Sbjct: 5907457 ttactctccaaacatcaaggaaatcaaggtcttggacaggaagaaagtcaggagagcaaa 5907398 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 5907397 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 5907354 Score = 127 bits (64), Expect = 9e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||||||||| || ||||||||||||||||||| |||||||| || Sbjct: 19180815 ttactctccaaacatcaaagaaatcaaagtcttggacaggaagaaagtcaggagagcaaa 19180874 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 19180875 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 19180918 Score = 117 bits (59), Expect = 8e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 514 gcaagttcctgagaacaaaaggcgagagtctacactaaaagggattgtgatagcaaggcg 573 |||||||||||||||||| | || |||||||| | ||||| ||||| |||| ||| || Sbjct: 5908462 gcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcattgtcataggaagacg 5908403 Query: 574 caatgctgggataaatacaaccttcagattgcggagattagtagctggtgtgggtgtcga 633 ||||||||||| |||||||| |||||| |||| ||||||||||||||||| || ||||| Sbjct: 5908402 taatgctgggatcaatacaactttcagactgcgtagattagtagctggtgttggagtcga 5908343 Query: 634 atctgtctttccact 648 |||||||||||||| Sbjct: 5908342 gtctgtctttccact 5908328 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaat 427 ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 5908780 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaat 5908733 Score = 69.9 bits (35), Expect = 2e-08 Identities = 74/87 (85%) Strand = Plus / Minus Query: 428 atcttgaacaaagaggcggttgataaggtccactcggagagggagattcctgatgtgcag 487 ||||||||||| ||||| ||||| ||||||| ||| || |||||||||||||||||| Sbjct: 5908628 atcttgaacaaggaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcag 5908569 Query: 488 cctggatgcatcattcagatgagattg 514 |||||||| || || || ||||||||| Sbjct: 5908568 cctggatgtattatccaaatgagattg 5908542 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 470 gagattcctgatgtgcagcctggatg 495 |||||||||||||||||||||||||| Sbjct: 19179034 gagattcctgatgtgcagcctggatg 19179059
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 135 bits (68), Expect = 4e-28 Identities = 95/104 (91%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || Sbjct: 78453 ttactctccaaacatcaaagaaatcaaggtcttggacaggaagaaagtcaggagagcaaa 78512 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 78513 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 78556 Score = 133 bits (67), Expect = 1e-27 Identities = 118/135 (87%) Strand = Plus / Plus Query: 514 gcaagttcctgagaacaaaaggcgagagtctacactaaaagggattgtgatagcaaggcg 573 ||||||||||||||| || |||| |||||||| | ||||| ||||| |||||||| || Sbjct: 77409 gcaagttcctgagaagaagcggcgcgagtctacgttgaaaggcattgtcatagcaagacg 77468 Query: 574 caatgctgggataaatacaaccttcagattgcggagattagtagctggtgtgggtgtcga 633 |||||||||||| |||||||| |||||| |||| ||||||||||||||||| || ||||| Sbjct: 77469 caatgctgggatcaatacaactttcagactgcgtagattagtagctggtgttggagtcga 77528 Query: 634 atctgtctttccact 648 |||||||||||||| Sbjct: 77529 gtctgtctttccact 77543 Score = 127 bits (64), Expect = 9e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||||||||| || ||||||||||||||||||| |||||||| || Sbjct: 79064 ttactctccaaacatcaaagaaatcaaagtcttggacaggaagaaagtcaggagagcaaa 79123 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 79124 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 79167 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 470 gagattcctgatgtgcagcctggatg 495 |||||||||||||||||||||||||| Sbjct: 77283 gagattcctgatgtgcagcctggatg 77308
>ref|NM_001053522.1| Oryza sativa (japonica cultivar-group) Os02g0524300 (Os02g0524300) mRNA, complete cds Length = 1038 Score = 133 bits (67), Expect = 1e-27 Identities = 94/103 (91%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || Sbjct: 936 ttactctccaaacatcaaagaaatcaaggtcttggacaggaagaaagtcaggagagcaaa 995 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatga 751 | ||||||||||| | |||||||||||||||||||| |||||| Sbjct: 996 gttgtattacctgcgggacaggatgaatgcacttaagaaatga 1038 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 470 gagattcctgatgtgcagcctggatg 495 |||||||||||||||||||||||||| Sbjct: 832 gagattcctgatgtgcagcctggatg 857
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 127 bits (64), Expect = 9e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| || Sbjct: 85678 ttactctccaaacatcaaggaaatcaaggtcttggacaggaagaaagtcaggagagcaaa 85619 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 85618 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 85575 Score = 117 bits (59), Expect = 8e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 514 gcaagttcctgagaacaaaaggcgagagtctacactaaaagggattgtgatagcaaggcg 573 |||||||||||||||||| | || |||||||| | ||||| ||||| |||| ||| || Sbjct: 86683 gcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcattgtcataggaagacg 86624 Query: 574 caatgctgggataaatacaaccttcagattgcggagattagtagctggtgtgggtgtcga 633 ||||||||||| |||||||| |||||| |||| ||||||||||||||||| || ||||| Sbjct: 86623 taatgctgggatcaatacaactttcagactgcgtagattagtagctggtgttggagtcga 86564 Query: 634 atctgtctttccact 648 |||||||||||||| Sbjct: 86563 gtctgtctttccact 86549 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaat 427 ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 87001 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaat 86954 Score = 69.9 bits (35), Expect = 2e-08 Identities = 74/87 (85%) Strand = Plus / Minus Query: 428 atcttgaacaaagaggcggttgataaggtccactcggagagggagattcctgatgtgcag 487 ||||||||||| ||||| ||||| ||||||| ||| || |||||||||||||||||| Sbjct: 86849 atcttgaacaaggaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcag 86790 Query: 488 cctggatgcatcattcagatgagattg 514 |||||||| || || || ||||||||| Sbjct: 86789 cctggatgtattatccaaatgagattg 86763
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 127 bits (64), Expect = 9e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 649 ttactcgccaaacatcaaagaaatgaagatcttggacaggaagaaagtgaggagagctaa 708 |||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| || Sbjct: 137259 ttactctccaaacatcaaggaaatcaaggtcttggacaggaagaaagtcaggagagcaaa 137200 Query: 709 gctgtattacctgagagacaggatgaatgcacttaaaaaatgag 752 | ||||||||||| | |||||||||||||||||||| ||||||| Sbjct: 137199 gttgtattacctgcgggacaggatgaatgcacttaagaaatgag 137156 Score = 117 bits (59), Expect = 8e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 514 gcaagttcctgagaacaaaaggcgagagtctacactaaaagggattgtgatagcaaggcg 573 |||||||||||||||||| | || |||||||| | ||||| ||||| |||| ||| || Sbjct: 138264 gcaagttcctgagaacaagcgtcgtgagtctacgttgaaaggcattgtcataggaagacg 138205 Query: 574 caatgctgggataaatacaaccttcagattgcggagattagtagctggtgtgggtgtcga 633 ||||||||||| |||||||| |||||| |||| ||||||||||||||||| || ||||| Sbjct: 138204 taatgctgggatcaatacaactttcagactgcgtagattagtagctggtgttggagtcga 138145 Query: 634 atctgtctttccact 648 |||||||||||||| Sbjct: 138144 gtctgtctttccact 138130 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 380 cgcatcaagttcaagaggcctgacaagactgccaggcacattatgaat 427 ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 138582 cgcatcaagtttaagaggcctgacaagacggccaggcacattatgaat 138535 Score = 69.9 bits (35), Expect = 2e-08 Identities = 74/87 (85%) Strand = Plus / Minus Query: 428 atcttgaacaaagaggcggttgataaggtccactcggagagggagattcctgatgtgcag 487 ||||||||||| ||||| ||||| ||||||| ||| || |||||||||||||||||| Sbjct: 138430 atcttgaacaaggaggctgttgacaaggtccgtggggaaagagagattcctgatgtgcag 138371 Query: 488 cctggatgcatcattcagatgagattg 514 |||||||| || || || ||||||||| Sbjct: 138370 cctggatgtattatccaaatgagattg 138344
>gb|BT014281.1| Lycopersicon esculentum clone 133514F, mRNA sequence Length = 1317 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 551 aaagggattgtgatagcaaggcgcaatgctgggataaatacaaccttcaga 601 ||||| || ||||||||||||||||||||||| ||||||| || |||||| Sbjct: 692 aaaggcatagtgatagcaaggcgcaatgctggtttaaatactacattcaga 742
>gb|AY105955.1| Zea mays PCO121693 mRNA sequence Length = 1004 Score = 48.1 bits (24), Expect = 0.065 Identities = 36/40 (90%) Strand = Plus / Plus Query: 689 aagaaagtgaggagagctaagctgtattacctgagagaca 728 ||||||||||||||||| ||| |||| ||||||| ||||| Sbjct: 749 aagaaagtgaggagagcaaagttgtactacctgaaagaca 788
>gb|AF288225.1| Salmonella typhimurium resistance against oxidative stress protein A (rox-A) gene, complete cds Length = 1724 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 559 tgtgatagcaaggcgcaatgctgggataaat 589 ||||||||| ||||||||||||||| ||||| Sbjct: 299 tgtgatagccaggcgcaatgctggggtaaat 329
>gb|AE008722.1| Salmonella typhimurium LT2, section 30 of 220 of the complete genome Length = 20029 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 559 tgtgatagcaaggcgcaatgctgggataaat 589 ||||||||| ||||||||||||||| ||||| Sbjct: 18975 tgtgatagccaggcgcaatgctggggtaaat 19005
>emb|X17250.1|STNITRD Salmonella typhimurium gene for nitroreductase Length = 1690 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Minus Query: 559 tgtgatagcaaggcgcaatgctgggataaat 589 ||||||||| ||||||||||||||| ||||| Sbjct: 62 tgtgatagccaggcgcaatgctggggtaaat 32
>emb|AL627267.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 3/20 Length = 240050 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 559 tgtgatagcaaggcgcaatgctgggataaat 589 ||||||||| ||||||||||||||| ||||| Sbjct: 103036 tgtgatagccaggcgcaatgctggggtaaat 103066
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Minus Query: 559 tgtgatagcaaggcgcaatgctgggataaat 589 ||||||||| ||||||||||||||| ||||| Sbjct: 2359065 tgtgatagccaggcgcaatgctggggtaaat 2359035
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 559 tgtgatagcaaggcgcaatgctgggataaat 589 ||||||||| ||||||||||||||| ||||| Sbjct: 680471 tgtgatagccaggcgcaatgctggggtaaat 680501
>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence Length = 1302002 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaa 670 |||||||||||||||||||||| Sbjct: 532863 ttactcgccaaacatcaaagaa 532884
>ref|XM_448461.1| Candida glabrata CBS138, CAGL0K05423g partial mRNA Length = 1230 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 649 ttactcgccaaacatcaaagaa 670 |||||||||||||||||||||| Sbjct: 1102 ttactcgccaaacatcaaagaa 1123
>gb|AC010996.9| Homo sapiens chromosome 10 clone RP11-118J22, complete sequence Length = 169512 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 660 acatcaaagaaatgaagatct 680 ||||||||||||||||||||| Sbjct: 28070 acatcaaagaaatgaagatct 28090
>emb|AL844532.18| Mouse DNA sequence from clone RP23-221O14 on chromosome 2, complete sequence Length = 207432 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gccgcggggctgcggcgaggc 131 ||||||||||||||||||||| Sbjct: 96017 gccgcggggctgcggcgaggc 96037
>emb|BX537134.5| Zebrafish DNA sequence from clone CH211-205J6, complete sequence Length = 192029 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 999 cttatttaccttgttttttccctct 1023 |||||||||||| |||||||||||| Sbjct: 114274 cttatttacctttttttttccctct 114250 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 188,140,202 Number of extensions: 9678861 Number of successful extensions: 168433 Number of sequences better than 10.0: 23 Number of HSP's gapped: 168425 Number of HSP's successfully gapped: 42 Length of query: 1054 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1031 Effective length of database: 18,503,978,556 Effective search space: 19077601891236 Effective search space used: 19077601891236 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
