ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf40h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q32440:NU5C_HORVU NAD(P)H-quinone oxidoreductase chain 5, chloro... 35 2.0
2O00459:P85B_HUMAN Phosphatidylinositol 3-kinase regulatory subun... 33 5.7
3Q08727:HXA2_CHICK Homeobox protein Hox-A2 - Gallus gallus (Chicken) 33 5.7
4P22086:ADA2C_RAT Alpha-2C adrenergic receptor - Rattus norvegicu... 33 5.7
5Q01337:ADA2C_MOUSE Alpha-2C adrenergic receptor - Mus musculus (... 33 5.7
6Q96Q82:TIGA1_HUMAN Putative uncharacterized protein TIGA1 - Homo... 33 7.4
7Q95H46:NU5C_WHEAT NAD(P)H-quinone oxidoreductase chain 5, chloro... 33 7.4
8Q7RX84:CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 - Neurospora ... 33 7.4
9P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus ... 32 9.7

>Q32440:NU5C_HORVU NAD(P)H-quinone oxidoreductase chain 5, chloroplast - Hordeum|
           vulgare (Barley)
          Length = 739
 Score = 34.7 bits (78), Expect = 2.0
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +1

Query: 607 TELMGSGAQIVFNLWIQFTKYGRTSVYQYFVSFLQILSYVIKFPIHASPKKEFPDPCRLL 786
           T  + S    +F L+I +  YG  S Y +F +   I S+V +     +PKKEF D  +  
Sbjct: 603 TNAISSVTLAIFGLFIAYIFYG--SAYSFFQNLDLINSFVKR-----NPKKEFLDQVKKN 655

Query: 787 FYEFYYNVTYV 819
            Y + YN  Y+
Sbjct: 656 IYSWSYNRGYI 666



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>O00459:P85B_HUMAN Phosphatidylinositol 3-kinase regulatory subunit beta - Homo|
           sapiens (Human)
          Length = 728

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 21  PARLSSPPPPTALDPGDLPVGIDGAKKTAGIPSLRYSLLSG---EIQHARPPTLP 176
           P  L +PPPP++  PG  P   DG++ +   P+L    L     E Q   PP LP
Sbjct: 252 PLLLRAPPPPSSPPPGGAP---DGSEPSPDFPALLVEKLLQEHLEEQEVAPPALP 303



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>Q08727:HXA2_CHICK Homeobox protein Hox-A2 - Gallus gallus (Chicken)|
          Length = 375

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 269 KASTPCHEVMETPPASRVEPEASTGARNRRAGGGDPHGSRRGR 397
           K ST  H  +  PP  +  P  + G   R +GGG P  S R R
Sbjct: 38  KNSTLSHSTLIPPPFEQTIPSLNPGGHPRHSGGGRPKASPRAR 80



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>P22086:ADA2C_RAT Alpha-2C adrenergic receptor - Rattus norvegicus (Rat)|
          Length = 458

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 305 PPASRVEPEASTGARNRRAGGGDPHGSRRGRRSGLDH*ARGWTASVAEAHTSSCDGP 475
           PP + VEP+ S+ A  RR  G    G R  RR G            AE  T S DGP
Sbjct: 276 PPRTEVEPDESSAAERRRRRGALRRGGR--RREG------------AEGDTGSADGP 318



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>Q01337:ADA2C_MOUSE Alpha-2C adrenergic receptor - Mus musculus (Mouse)|
          Length = 458

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 305 PPASRVEPEASTGARNRRAGGGDPHGSRRGRRSGLDH*ARGWTASVAEAHTSSCDGP 475
           PP + VEP+ S+ A  RR  G    G R  RR G            AE  T S DGP
Sbjct: 276 PPRTEVEPDESSAAERRRRRGALRRGGR--RREG------------AEGDTGSADGP 318



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>Q96Q82:TIGA1_HUMAN Putative uncharacterized protein TIGA1 - Homo sapiens (Human)|
          Length = 120

 Score = 32.7 bits (73), Expect = 7.4
 Identities = 30/112 (26%), Positives = 45/112 (40%)
 Frame = +1

Query: 385 TTRSS*WPGSLSSRMDGLSGRGAHEFLRWTDPQGRWIWPRDRLI*PLYRQISSLLGFSLT 564
           T R + W GSLS    G S      FL W    G W+WPR      L R+  +  G + T
Sbjct: 17  TCRKALWDGSLSFLPFGAS---LLWFLLWVLWDGAWLWPRG-----LSRR-GAGRGNAAT 67

Query: 565 LPFFLSTRSLIGACTELMGSGAQIVFNLWIQFTKYGRTSVYQYFVSFLQILS 720
           L      R  +   +  +  G+ +   L     K G +S+  Y + + +  S
Sbjct: 68  LSLVSRLRRPVSEVSGAVNKGSGLASGLRSHVWKRGASSICVYIIDYAREFS 119



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>Q95H46:NU5C_WHEAT NAD(P)H-quinone oxidoreductase chain 5, chloroplast - Triticum|
           aestivum (Wheat)
          Length = 739

 Score = 32.7 bits (73), Expect = 7.4
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +1

Query: 607 TELMGSGAQIVFNLWIQFTKYGRTSVYQYFVSFLQILSYVIKFPIHASPKKEFPDPCRLL 786
           T  + S    +F L+I +  YG  S Y +F +   I S+        +PKKEF D  +  
Sbjct: 603 TNAISSVTLAIFGLFIAYIFYG--SAYSFFQNLDLINSFY-----KGNPKKEFLDQVKKN 655

Query: 787 FYEFYYNVTYV 819
            Y + YN  Y+
Sbjct: 656 IYSWSYNRGYI 666



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>Q7RX84:CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 - Neurospora crassa|
          Length = 1010

 Score = 32.7 bits (73), Expect = 7.4
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = +1

Query: 31   SPRRRHQRRSIQATYRWESTVPRKPQGSPRSATPSYQGRSSMRVLQR-YPRLSLVARV-- 201
            SP  R + RS     R  S   R    SP +A P  +GRS  R   R Y R         
Sbjct: 800  SPPPRGRGRSYDRYSRSPSR-SRSRTRSPAAAPPIRRGRSGTRSRSRSYSRSPSPPPARG 858

Query: 202  --SAGVAPVTQDAILAEASGRHGREGIYPLPRS 294
              + G APV+ +   A ASG+  REG Y   RS
Sbjct: 859  YPTRGRAPVSNNDRAAAASGKRRREGSYSASRS 891



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>P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus (strain Kaplan) (PRV)|
          Length = 1733

 Score = 32.3 bits (72), Expect = 9.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 305 PPASRVEPEASTGARNRRAGGGDPHGSRRGRRSGLDH*ARGWTASVAEA 451
           PP    +P  + G+  RR  GG P G    RR G    A G  A+ A+A
Sbjct: 289 PPPPPPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAEGTEAAAADA 337


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 437,790,813
Number of extensions: 9673867
Number of successful extensions: 25117
Number of sequences better than 10.0: 9
Number of HSP's gapped: 25083
Number of HSP's successfully gapped: 9
Length of query: 831
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 709
Effective length of database: 67,222,449
Effective search space: 47660716341
Effective search space used: 47660716341
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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