ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf37d14 |
|---|---|
| Clone Library Name | barley_pub |
>O08949:TF2AA_RAT Transcription initiation factor IIA subunit 1 - Rattus norvegicus| (Rat) Length = 377 Score = 61.6 bits (148), Expect = 9e-09 Identities = 25/47 (53%), Positives = 40/47 (85%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T+++V+ Q+DK+ R+KN+WK LKDGIM+LNGRD +F+KA G+ ++ Sbjct: 331 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 377 Score = 46.6 bits (109), Expect = 3e-04 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = +2 Query: 107 SGNVSTV---YISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGAISG 262 S N +TV Y SVI+DV+ VR+ F+ GV + VL EL+ LWE K++ A+ G Sbjct: 4 SANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58
>Q5RCU0:TF2AA_PONPY Transcription initiation factor IIA subunit 1 - Pongo pygmaeus| (Orangutan) Length = 376 Score = 61.6 bits (148), Expect = 9e-09 Identities = 25/47 (53%), Positives = 40/47 (85%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T+++V+ Q+DK+ R+KN+WK LKDGIM+LNGRD +F+KA G+ ++ Sbjct: 330 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376 Score = 46.6 bits (109), Expect = 3e-04 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = +2 Query: 107 SGNVSTV---YISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGAISG 262 S N +TV Y SVI+DV+ VR+ F+ GV + VL EL+ LWE K++ A+ G Sbjct: 4 SANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58
>Q99PM3:TF2AA_MOUSE Transcription initiation factor IIA subunit 1 - Mus musculus (Mouse)| Length = 378 Score = 61.6 bits (148), Expect = 9e-09 Identities = 25/47 (53%), Positives = 40/47 (85%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T+++V+ Q+DK+ R+KN+WK LKDGIM+LNGRD +F+KA G+ ++ Sbjct: 332 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378 Score = 46.6 bits (109), Expect = 3e-04 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = +2 Query: 107 SGNVSTV---YISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGAISG 262 S N +TV Y SVI+DV+ VR+ F+ GV + VL EL+ LWE K++ A+ G Sbjct: 4 SANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58
>P52655:TF2AA_HUMAN Transcription initiation factor IIA subunit 1 - Homo sapiens (Human)| Length = 376 Score = 61.6 bits (148), Expect = 9e-09 Identities = 25/47 (53%), Positives = 40/47 (85%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T+++V+ Q+DK+ R+KN+WK LKDGIM+LNGRD +F+KA G+ ++ Sbjct: 330 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376 Score = 46.6 bits (109), Expect = 3e-04 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = +2 Query: 107 SGNVSTV---YISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGAISG 262 S N +TV Y SVI+DV+ VR+ F+ GV + VL EL+ LWE K++ A+ G Sbjct: 4 SANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58
>P52654:TF2AA_DROME Transcription initiation factor IIA subunit 1 - Drosophila| melanogaster (Fruit fly) Length = 366 Score = 57.0 bits (136), Expect = 2e-07 Identities = 20/47 (42%), Positives = 39/47 (82%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T ++++ Q+DK+TR++N+WK LKDGIM++ G+D +F K++G+ ++ Sbjct: 320 DTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366 Score = 41.6 bits (96), Expect = 0.009 Identities = 19/48 (39%), Positives = 31/48 (64%) Frame = +2 Query: 113 NVSTVYISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGAI 256 +V VY +VI+DV+ VR+ F+ GV + VL E++ +W K+L A+ Sbjct: 7 SVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>Q8R4I4:TF2AY_MOUSE TFIIA-alpha and beta-like factor - Mus musculus (Mouse)| Length = 468 Score = 56.2 bits (134), Expect = 4e-07 Identities = 23/47 (48%), Positives = 36/47 (76%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T+++++ Q+DK+ R+KNRWK LKDG+M GRD +F KA GE ++ Sbjct: 422 DTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVFAKAIGEAEW 468 Score = 40.0 bits (92), Expect = 0.027 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = +2 Query: 116 VSTVYISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGA 253 V +Y SVI+DV+ VR+ F G+ + VL +L+ LWE K+L A Sbjct: 7 VPKLYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKA 52
>P32773:TOA1_YEAST Transcription initiation factor IIA large subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 286 Score = 53.9 bits (128), Expect = 2e-06 Identities = 23/45 (51%), Positives = 33/45 (73%) Frame = +2 Query: 1172 QHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 ++L+L +DKVTRTK RWKC+LKDG++ +N D F KA E ++ Sbjct: 241 ENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285 Score = 39.7 bits (91), Expect = 0.036 Identities = 16/46 (34%), Positives = 29/46 (63%) Frame = +2 Query: 101 MASGNVSTVYISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKM 238 M++ S VY +++ VV +VREDF G+ + L +L+ +W+ K+ Sbjct: 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKL 46
>Q9UNN4:TF2AY_HUMAN TFIIA-alpha and beta-like factor - Homo sapiens (Human)| Length = 478 Score = 53.1 bits (126), Expect = 3e-06 Identities = 21/47 (44%), Positives = 35/47 (74%) Frame = +2 Query: 1166 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKASGEFDF 1306 +T ++++ Q+DK+ R+KN+WK LKDG+M GRD +F KA G+ ++ Sbjct: 432 DTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 478 Score = 39.3 bits (90), Expect = 0.047 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = +2 Query: 116 VSTVYISVIDDVVAKVREDFITYGVGDAVLNELQALWEMKMLHCGA 253 V +Y SVI+DV+ VR F G+ + VL +L+ LWE K+L A Sbjct: 7 VPKLYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKA 52
>P38036:YGCB_ECOLI Uncharacterized protein ygcB - Escherichia coli| Length = 888 Score = 35.8 bits (81), Expect = 0.52 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = -1 Query: 1455 WVKQASTGKHDT*SLCQTRHGTSLLSPSLPYVKDSRYSRHLKYHLYHEIQKSNSPEAL-L 1279 W ++ S +D L TR G L P LPYV+ S + L +Y ++ EAL L Sbjct: 770 WAEEYSLQDNDETILAVTRDGEMSL-PLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALAL 828 Query: 1278 NRTSLPF 1258 NR ++PF Sbjct: 829 NRVNVPF 835
>Q6P4S6:QSK_MOUSE Serine/threonine-protein kinase QSK - Mus musculus (Mouse)| Length = 1311 Score = 34.3 bits (77), Expect = 1.5 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -2 Query: 656 GPHGSPHKQHSHQPPVVSDSSRVMEVACKGLGGQFLDQTHSSPSRFSCH 510 GP +P ++HQPP++ S + C+GL F D++ S+ ++ CH Sbjct: 1065 GPSPTPTHGYAHQPPLMHSESMEEDCLCEGLKEGFPDKSSSTLTK-GCH 1112
>Q64213:SF01_MOUSE Splicing factor 1 - Mus musculus (Mouse)| Length = 653 Score = 33.5 bits (75), Expect = 2.6 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 479 GPSDYAPSPISDMRNGMGMNGSDPK-TGRPSPYMQPPSPWMNQRP 610 GP + P P+ + G G + G P P+MQPP P MNQ P Sbjct: 393 GPHSF-PHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGP 436
>Q15637:SF01_HUMAN Splicing factor 1 - Homo sapiens (Human)| Length = 639 Score = 33.5 bits (75), Expect = 2.6 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 479 GPSDYAPSPISDMRNGMGMNGSDPK-TGRPSPYMQPPSPWMNQRP 610 GP + P P+ + G G + G P P+MQPP P MNQ P Sbjct: 393 GPHSF-PHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGP 436
>Q8N7Y1:PRR10_HUMAN Proline-rich protein 10 - Homo sapiens (Human)| Length = 241 Score = 33.1 bits (74), Expect = 3.3 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Frame = +2 Query: 491 YAPSPISDMRNGMGM-----NGSDPKTGRPSPYMQPPSPWMNQRPLGVDVNVAYEESRED 655 + PS R G G+ GS +T +PP W++ P + V+ A+ SR D Sbjct: 26 WKPSRPGAARGGRGLWTVGGGGSPTETAESQQLGKPPEFWVSAHPGWLQVSCAHRASRWD 85 Query: 656 PDRLMQPQPLTKDFLMMSSGKRKRDEYPGQLPSGSFVPQQDGCADQVAEFVGSKDNAQQV 835 R PL + F +R P LP VP C + +A S A + Sbjct: 86 ASRW---HPLQR-FFARRGVRRPNPSVPSPLPKPP-VPSAGSC-EPLAPPPTSASGASRS 139 Query: 836 W 838 W Sbjct: 140 W 140
>Q99PF5:FUBP2_RAT Far upstream element-binding protein 2 - Rattus norvegicus (Rat)| Length = 721 Score = 33.1 bits (74), Expect = 3.3 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 6/52 (11%) Frame = +2 Query: 473 PTGPSDYAPSPISDMRN------GMGMNGSDPKTGRPSPYMQPPSPWMNQRP 610 P GP P P M G G+ P G P P+ PP W N P Sbjct: 502 PVGPGPGGPGPAGPMGPFHPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYP 553
>Q92945:FUBP2_HUMAN Far upstream element-binding protein 2 - Homo sapiens (Human)| Length = 707 Score = 33.1 bits (74), Expect = 3.3 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 6/52 (11%) Frame = +2 Query: 473 PTGPSDYAPSPISDMRN------GMGMNGSDPKTGRPSPYMQPPSPWMNQRP 610 P GP P P M G G+ P G P P+ PP W N P Sbjct: 499 PVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYP 550
>O55098:STK10_MOUSE Serine/threonine-protein kinase 10 - Mus musculus (Mouse)| Length = 966 Score = 32.7 bits (73), Expect = 4.4 Identities = 18/67 (26%), Positives = 28/67 (41%) Frame = +2 Query: 482 PSDYAPSPISDMRNGMGMNGSDPKTGRPSPYMQPPSPWMNQRPLGVDVNVAYEESREDPD 661 PS P + +G+ N +D K P P RPL +D + +E ++ PD Sbjct: 381 PSGDGPLQTTSPADGLSKNDNDLKV---------PVPLRKSRPLSMDARIQMDEEKQIPD 431 Query: 662 RLMQPQP 682 + P P Sbjct: 432 QDENPSP 438
>Q9Y5Q3:MAFB_HUMAN Transcription factor MafB - Homo sapiens (Human)| Length = 323 Score = 32.7 bits (73), Expect = 4.4 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Frame = -2 Query: 815 LTPQIRQPGL-HNHPVAAQMNQKEADQDIHPSSVFQKTSSENP*SVAEVASTGLGPHGSP 639 LTP+ L +HPV + ++ + H + A VA LGPH P Sbjct: 102 LTPEDAVEALIGSHPVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHP 161 Query: 638 HKQHSHQ--PPVVSDSSRVMEV 579 H H HQ PP S +S ++ Sbjct: 162 HHHHHHQASPPPSSAASPAQQL 183
>Q64ZR4:IF2_BACFR Translation initiation factor IF-2 - Bacteroides fragilis| Length = 1015 Score = 32.7 bits (73), Expect = 4.4 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +2 Query: 548 PKTGRPSPYMQPPSPWMNQRPLGVDVNVAYEESREDPDRLMQPQPLTK 691 P T P P + P P + ++P+ + V E +E+P ++ P+ K Sbjct: 164 PATSEPKPVKEEPKPVVVEKPVETEKKVVEEVKKEEPKVVVSPEKTEK 211
>Q5LIN1:IF2_BACFN Translation initiation factor IF-2 - Bacteroides fragilis (strain| ATCC 25285 / NCTC 9343) Length = 1015 Score = 32.7 bits (73), Expect = 4.4 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +2 Query: 548 PKTGRPSPYMQPPSPWMNQRPLGVDVNVAYEESREDPDRLMQPQPLTK 691 P T P P + P P + ++P+ + V E +E+P ++ P+ K Sbjct: 164 PATSEPKPVKEEPKPVVVEKPVETEKKVVEEVKKEEPKVVVSPEKTEK 211
>Q7N3S7:HMUV_PHOLL Hemin import ATP-binding protein hmuV - Photorhabdus luminescens| subsp. laumondii Length = 264 Score = 32.7 bits (73), Expect = 4.4 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 815 LTPQIRQPGLHNHPVAAQMNQKEADQDIHPSSVFQKTSSEN-P*SVAEVASTGLGPHGSP 639 + P+ Q LH P+ Q A+Q +V ++ SS + P SV EV + G PHG Sbjct: 59 IKPEHGQCDLHGTPI----EQWPAEQLARTRAVMRQHSSLSFPFSVEEVVAMGRSPHGIH 114 Query: 638 HKQ 630 HKQ Sbjct: 115 HKQ 117
>Q8AYC1:MRTFB_XENLA Myocardin-related transcription factor B - Xenopus laevis (African| clawed frog) Length = 1067 Score = 32.3 bits (72), Expect = 5.7 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Frame = +2 Query: 551 KTGRPSPYMQPPSPWMNQRPLGVDVN---VAYEESREDPDRLMQPQPL---TKDFLMMSS 712 K+G SP ++ PSP RP+ +V V SR P M P PL + + L +S Sbjct: 889 KSGEMSPLIKEPSPISKMRPVTANVTTMPVNTVVSRPPPQIHMAP-PLSLESTNSLSVSL 947 Query: 713 GKRKRDEYPGQLPSGSFVPQQDGCADQVAEFVGSKD-NAQQVWNSILNKQES 865 + G LPSG+ +P + +D F D N + N+ + + ES Sbjct: 948 ESQLEAFLDGTLPSGNNIPHLESNSDDRETFSLIDDLNNDLLQNTAMLEHES 999
>Q5TZA2:CROCC_HUMAN Rootletin - Homo sapiens (Human)| Length = 2017 Score = 32.3 bits (72), Expect = 5.7 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%) Frame = +2 Query: 470 IPTGPSDYAPSPISDMRNGMGMNGSDPKTGRPSPYMQPPSPWMNQRPLGVDVNVAYEESR 649 +P P+ AP+ S G G+N P T SP QPPSP P D+ Sbjct: 1457 VPGSPARDAPAEGS----GEGLNS--PSTLECSPGSQPPSPGPATSPASPDL-------- 1502 Query: 650 EDPDRLMQPQPLTKDFLM-MSSGKRKRDEYPGQLPS-----GSFVPQQDGCADQVAEFVG 811 DP+ + + ++FL + S +R+RDE Q + ++D + + Sbjct: 1503 -DPEAV---RGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQK 1558 Query: 812 SKDNAQQVWNSILNKQESVTKTLSIKESTI 901 + +++ S+ + V L+++E ++ Sbjct: 1559 AVAESEEARRSVDGRLSGVQAELALQEESV 1588
>P36167:SRL3_YEAST Protein SRL3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 246 Score = 31.6 bits (70), Expect = 9.7 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +2 Query: 872 KTLSIKESTIPPVLPQRDGIQD---DYNDQFFFPGVPTEDYNTPGESSEYRTPTPAIATP 1042 KT + P P DG +D YN QF FPG T + + +PTP + +P Sbjct: 47 KTSISEAQDSPTSAPSPDGNEDPTYQYNVQFHFPGPITPTTPRSKNAEMFPSPTPPLVSP 106 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 262,655,247 Number of extensions: 5868674 Number of successful extensions: 18283 Number of sequences better than 10.0: 23 Number of HSP's gapped: 18261 Number of HSP's successfully gapped: 31 Length of query: 527 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 409 Effective length of database: 68,319,629 Effective search space: 27942728261 Effective search space used: 27942728261 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
