ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf37d14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT832954.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116M05, full insert sequence Length = 1633 Score = 369 bits (186), Expect = 2e-98 Identities = 441/526 (83%) Strand = Plus / Plus Query: 335 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 394 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 373 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 432 Query: 395 atgctgttcccaccgacgccgctgcagaccccgatccagacaccacttccagggattgat 454 ||||||||||| ||||||||||| || |||||||||||||| || |||||||| | ||| Sbjct: 433 atgctgttccccccgacgccgctacaaaccccgatccagacccctcttccaggaacagat 492 Query: 455 acagggatgtataacatacccacagggccgtcggactatgccccatcgcccatcagtgac 514 |||||||||| ||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct: 493 gcagggatgtacaacattcccactgggccttcagactatgccccttccccgatcagtgac 552 Query: 515 atgagaaacgggatggggatgaatgggtctgatccaaaaactggccgcccaagcccttac 574 |||| || || |||| |||||||| |||||||||| ||||| ||||| || || ||| Sbjct: 553 gtgaggaatggcatggccatgaatggagctgatccaaagactggtcgcccgagtccctac 612 Query: 575 atgcaacctccatcaccctggatgaatcagagaccactgggggttgatgtgaatgttgct 634 |||| || || || |||||||||| |||||| || ||||| |||||||||||||| ||| Sbjct: 613 atgcctccaccctctccctggatgactcagaggccgctgggcgttgatgtgaatgtcgct 672 Query: 635 tatgaggagagccgtgaggacccagaccggttgatgcaacctcagccactgactaaggat 694 |||| ||||| ||||||||||||||| || || |||| || ||| ||||||||| Sbjct: 673 tatgtggagaaccgtgaggacccagataggaccggacagcctccgcaactaactaaggat 732 Query: 695 tttctgatgatgtcttctggaaaacggaagagggatgaatatcctggtcagcttccttct 754 ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 733 tttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcccttct 792 Query: 755 ggttcatttgtgccgcaacaggatggttgtgcagaccaggttgccgaatttgtggggtca 814 ||||| |||||||| ||||| ||||| ||||||| ||| | | |||||||| | ||| Sbjct: 793 ggttcttttgtgccacaacaagatggaagtgcagatcagatagttgaatttgttgtctca 852 Query: 815 aaggataacgcacaacaggtgtggaattccatcttgaacaagcaag 860 ||||| ||||||||||| | |||| |||||| |||||||||||| Sbjct: 853 aaggacaacgcacaacaactttggagttccattgtgaacaagcaag 898 Score = 188 bits (95), Expect = 4e-44 Identities = 137/151 (90%) Strand = Plus / Plus Query: 1163 cctaacacgcagcaccttgtccttgcacaatttgacaaggtaacaaggacaaagaatcgc 1222 |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| ||| Sbjct: 1177 cctaacacacagcaccttgtcctcgcacagtttgacaaagtgacaaggacaaagaaccgc 1236 Query: 1223 tggaagtgcactttgaaggatggaatcatgcatttgaatggcagagatgttctattcaac 1282 ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 1237 tggaaatgcactttgaacgatggaatcatgcatttaaatggccgagatgttctattcaac 1296 Query: 1283 aaggcttcaggagagtttgatttttgaattt 1313 |||||| | || || |||||||||||||||| Sbjct: 1297 aaggctaccggcgaatttgatttttgaattt 1327 Score = 172 bits (87), Expect = 2e-39 Identities = 153/175 (87%) Strand = Plus / Plus Query: 100 catggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaa 159 |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct: 138 catggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaa 197 Query: 160 ggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 219 ||| || || |||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 198 ggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 257 Query: 220 tctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 274 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 258 gctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 312 Score = 87.7 bits (44), Expect = 1e-13 Identities = 118/142 (83%), Gaps = 3/142 (2%) Strand = Plus / Plus Query: 912 ttcctcaacgggacgggatacaagatgactataacgatcaattcttcttcccaggagttc 971 ||||||||||||| ||||| ||||||||||| |||| ||| | ||||| |||||||| Sbjct: 950 ttcctcaacgggatgggatg---gatgactataatgatccattttacttccaaggagttc 1006 Query: 972 caaccgaagactacaatacccctggggaatcttccgaatatcgaactccaacacctgcta 1031 |||| || || |||||||||||||| ||||| || ||||| ||| |||| ||||| ||| Sbjct: 1007 caactgaggattacaatacccctggagaatcgtcggaataccgagctcccacaccggctg 1066 Query: 1032 ttgcaacaccaaagccaagaaa 1053 ||| ||||||||| || ||||| Sbjct: 1067 ttggaacaccaaaaccgagaaa 1088 Score = 56.0 bits (28), Expect = 4e-04 Identities = 87/105 (82%), Gaps = 5/105 (4%) Strand = Plus / Plus Query: 1431 ttcctgttgaggctt-gcttcacccagttggtttgttaccataactcatgtcactgt--- 1486 ||||||||||||||| ||| ||||||| ||||||||||| ||||| | || |||| Sbjct: 1429 ttcctgttgaggctttgctctacccagtgggtttgttaccgtaactgttatcgctgtaaa 1488 Query: 1487 -aaaaatggtacagttgggacggttgtggatattttcttgagatg 1530 ||||||| |||||||||||| ||||| || |||||| ||||||| Sbjct: 1489 aaaaaatgctacagttgggactgttgtagacattttcctgagatg 1533
>ref|NM_001061636.1| Oryza sativa (japonica cultivar-group) Os05g0292200 (Os05g0292200) mRNA, complete cds Length = 1630 Score = 369 bits (186), Expect = 2e-98 Identities = 441/526 (83%) Strand = Plus / Plus Query: 335 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 394 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 373 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 432 Query: 395 atgctgttcccaccgacgccgctgcagaccccgatccagacaccacttccagggattgat 454 ||||||||||| ||||||||||| || |||||||||||||| || |||||||| | ||| Sbjct: 433 atgctgttccccccgacgccgctacaaaccccgatccagacccctcttccaggaacagat 492 Query: 455 acagggatgtataacatacccacagggccgtcggactatgccccatcgcccatcagtgac 514 |||||||||| ||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct: 493 gcagggatgtacaacattcccactgggccttcagactatgccccttccccgatcagtgac 552 Query: 515 atgagaaacgggatggggatgaatgggtctgatccaaaaactggccgcccaagcccttac 574 |||| || || |||| |||||||| |||||||||| ||||| ||||| || || ||| Sbjct: 553 gtgaggaatggcatggccatgaatggagctgatccaaagactggtcgcccgagtccctac 612 Query: 575 atgcaacctccatcaccctggatgaatcagagaccactgggggttgatgtgaatgttgct 634 |||| || || || |||||||||| |||||| || ||||| |||||||||||||| ||| Sbjct: 613 atgcctccaccctctccctggatgactcagaggccgctgggcgttgatgtgaatgtcgct 672 Query: 635 tatgaggagagccgtgaggacccagaccggttgatgcaacctcagccactgactaaggat 694 |||| ||||| ||||||||||||||| || || |||| || ||| ||||||||| Sbjct: 673 tatgtggagaaccgtgaggacccagataggaccggacagcctccgcaactaactaaggat 732 Query: 695 tttctgatgatgtcttctggaaaacggaagagggatgaatatcctggtcagcttccttct 754 ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 733 tttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcccttct 792 Query: 755 ggttcatttgtgccgcaacaggatggttgtgcagaccaggttgccgaatttgtggggtca 814 ||||| |||||||| ||||| ||||| ||||||| ||| | | |||||||| | ||| Sbjct: 793 ggttcttttgtgccacaacaagatggaagtgcagatcagatagttgaatttgttgtctca 852 Query: 815 aaggataacgcacaacaggtgtggaattccatcttgaacaagcaag 860 ||||| ||||||||||| | |||| |||||| |||||||||||| Sbjct: 853 aaggacaacgcacaacaactttggagttccattgtgaacaagcaag 898 Score = 196 bits (99), Expect = 2e-46 Identities = 138/151 (91%) Strand = Plus / Plus Query: 1163 cctaacacgcagcaccttgtccttgcacaatttgacaaggtaacaaggacaaagaatcgc 1222 |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| ||| Sbjct: 1177 cctaacacacagcaccttgtcctcgcacagtttgacaaagtgacaaggacaaagaaccgc 1236 Query: 1223 tggaagtgcactttgaaggatggaatcatgcatttgaatggcagagatgttctattcaac 1282 ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 1237 tggaaatgcactttgaaggatggaatcatgcatttaaatggccgagatgttctattcaac 1296 Query: 1283 aaggcttcaggagagtttgatttttgaattt 1313 |||||| | || || |||||||||||||||| Sbjct: 1297 aaggctaccggcgaatttgatttttgaattt 1327 Score = 172 bits (87), Expect = 2e-39 Identities = 153/175 (87%) Strand = Plus / Plus Query: 100 catggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaa 159 |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct: 138 catggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaa 197 Query: 160 ggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 219 ||| || || |||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 198 ggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 257 Query: 220 tctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 274 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 258 gctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 312 Score = 87.7 bits (44), Expect = 1e-13 Identities = 118/142 (83%), Gaps = 3/142 (2%) Strand = Plus / Plus Query: 912 ttcctcaacgggacgggatacaagatgactataacgatcaattcttcttcccaggagttc 971 ||||||||||||| ||||| ||||||||||| |||| ||| | ||||| |||||||| Sbjct: 950 ttcctcaacgggatgggatg---gatgactataatgatccattttacttccaaggagttc 1006 Query: 972 caaccgaagactacaatacccctggggaatcttccgaatatcgaactccaacacctgcta 1031 |||| || || |||||||||||||| ||||| || ||||| ||| |||| ||||| ||| Sbjct: 1007 caactgaggattacaatacccctggagaatcgtcggaataccgagctcccacaccggctg 1066 Query: 1032 ttgcaacaccaaagccaagaaa 1053 ||| ||||||||| || ||||| Sbjct: 1067 ttggaacaccaaaaccgagaaa 1088 Score = 48.1 bits (24), Expect = 0.098 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1487 aaaaatggtacagttgggacggttgtggatattttcttgagatg 1530 ||||||| |||||||||||| ||||| || |||||| ||||||| Sbjct: 1490 aaaaatgctacagttgggactgttgtagacattttcctgagatg 1533
>dbj|AK065373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M09, full insert sequence Length = 1631 Score = 369 bits (186), Expect = 2e-98 Identities = 441/526 (83%) Strand = Plus / Plus Query: 335 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 394 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 374 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 433 Query: 395 atgctgttcccaccgacgccgctgcagaccccgatccagacaccacttccagggattgat 454 ||||||||||| ||||||||||| || |||||||||||||| || |||||||| | ||| Sbjct: 434 atgctgttccccccgacgccgctacaaaccccgatccagacccctcttccaggaacagat 493 Query: 455 acagggatgtataacatacccacagggccgtcggactatgccccatcgcccatcagtgac 514 |||||||||| ||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct: 494 gcagggatgtacaacattcccactgggccttcagactatgccccttccccgatcagtgac 553 Query: 515 atgagaaacgggatggggatgaatgggtctgatccaaaaactggccgcccaagcccttac 574 |||| || || |||| |||||||| |||||||||| ||||| ||||| || || ||| Sbjct: 554 gtgaggaatggcatggccatgaatggagctgatccaaagactggtcgcccgagtccctac 613 Query: 575 atgcaacctccatcaccctggatgaatcagagaccactgggggttgatgtgaatgttgct 634 |||| || || || |||||||||| |||||| || ||||| |||||||||||||| ||| Sbjct: 614 atgcctccaccctctccctggatgactcagaggccgctgggcgttgatgtgaatgtcgct 673 Query: 635 tatgaggagagccgtgaggacccagaccggttgatgcaacctcagccactgactaaggat 694 |||| ||||| ||||||||||||||| || || |||| || ||| ||||||||| Sbjct: 674 tatgtggagaaccgtgaggacccagataggaccggacagcctccgcaactaactaaggat 733 Query: 695 tttctgatgatgtcttctggaaaacggaagagggatgaatatcctggtcagcttccttct 754 ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct: 734 tttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcccttct 793 Query: 755 ggttcatttgtgccgcaacaggatggttgtgcagaccaggttgccgaatttgtggggtca 814 ||||| |||||||| ||||| ||||| ||||||| ||| | | |||||||| | ||| Sbjct: 794 ggttcttttgtgccacaacaagatggaagtgcagatcagatagttgaatttgttgtctca 853 Query: 815 aaggataacgcacaacaggtgtggaattccatcttgaacaagcaag 860 ||||| ||||||||||| | |||| |||||| |||||||||||| Sbjct: 854 aaggacaacgcacaacaactttggagttccattgtgaacaagcaag 899 Score = 196 bits (99), Expect = 2e-46 Identities = 138/151 (91%) Strand = Plus / Plus Query: 1163 cctaacacgcagcaccttgtccttgcacaatttgacaaggtaacaaggacaaagaatcgc 1222 |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| ||| Sbjct: 1178 cctaacacacagcaccttgtcctcgcacagtttgacaaagtgacaaggacaaagaaccgc 1237 Query: 1223 tggaagtgcactttgaaggatggaatcatgcatttgaatggcagagatgttctattcaac 1282 ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 1238 tggaaatgcactttgaaggatggaatcatgcatttaaatggccgagatgttctattcaac 1297 Query: 1283 aaggcttcaggagagtttgatttttgaattt 1313 |||||| | || || |||||||||||||||| Sbjct: 1298 aaggctaccggcgaatttgatttttgaattt 1328 Score = 172 bits (87), Expect = 2e-39 Identities = 153/175 (87%) Strand = Plus / Plus Query: 100 catggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaa 159 |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct: 139 catggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaa 198 Query: 160 ggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 219 ||| || || |||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 199 ggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 258 Query: 220 tctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 274 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 259 gctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 313 Score = 87.7 bits (44), Expect = 1e-13 Identities = 118/142 (83%), Gaps = 3/142 (2%) Strand = Plus / Plus Query: 912 ttcctcaacgggacgggatacaagatgactataacgatcaattcttcttcccaggagttc 971 ||||||||||||| ||||| ||||||||||| |||| ||| | ||||| |||||||| Sbjct: 951 ttcctcaacgggatgggatg---gatgactataatgatccattttacttccaaggagttc 1007 Query: 972 caaccgaagactacaatacccctggggaatcttccgaatatcgaactccaacacctgcta 1031 |||| || || |||||||||||||| ||||| || ||||| ||| |||| ||||| ||| Sbjct: 1008 caactgaggattacaatacccctggagaatcgtcggaataccgagctcccacaccggctg 1067 Query: 1032 ttgcaacaccaaagccaagaaa 1053 ||| ||||||||| || ||||| Sbjct: 1068 ttggaacaccaaaaccgagaaa 1089 Score = 48.1 bits (24), Expect = 0.098 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1487 aaaaatggtacagttgggacggttgtggatattttcttgagatg 1530 ||||||| |||||||||||| ||||| || |||||| ||||||| Sbjct: 1491 aaaaatgctacagttgggactgttgtagacattttcctgagatg 1534
>gb|AY105474.1| Zea mays PCO117051 mRNA sequence Length = 1555 Score = 331 bits (167), Expect = 5e-87 Identities = 380/451 (84%) Strand = Plus / Plus Query: 315 ccggcgcgactccaccagtgcacgacctcaacgtgccctacgaggccacgtccgaggagt 374 ||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 295 ccggcacgacaccgccagtgcacgacctcaacgtgccgtacgaggccacatccgaggagt 354 Query: 375 acgccaccccaaccgccgacatgctgttcccaccgacgccgctgcagaccccgatccaga 434 |||||||||| ||||| |||||||||||||| ||||| || |||||||||| ||||||| Sbjct: 355 acgccaccccgaccgctgacatgctgttcccgccgacaccattgcagaccccaatccaga 414 Query: 435 caccacttccagggattgatacagggatgtataacatacccacagggccgtcggactatg 494 | || | ||||||| || ||||||||||| |||||||| || || || || || |||| Sbjct: 415 ctcctttgccagggacagacacagggatgtacaacatacctactggcccttccgattatg 474 Query: 495 ccccatcgcccatcagtgacatgagaaacgggatggggatgaatgggtctgatccaaaaa 554 ||||||| || ||||| || || || ||||||||| ||| |||||| | || |||||| Sbjct: 475 ccccatcaccgatcagcgatatcaggaacgggatgacgataaatggggcagacccaaaag 534 Query: 555 ctggccgcccaagcccttacatgcaacctccatcaccctggatgaatcagagaccactgg 614 ||||||| ||||| |||||||||| ||| || || || |||||||||||||| || |||| Sbjct: 535 ctggccgtccaagtccttacatgccaccaccttccccttggatgaatcagaggccgctgg 594 Query: 615 gggttgatgtgaatgttgcttatgaggagagccgtgaggacccagaccggttgatgcaac 674 | |||||||||||||| ||||||| ||| | ||||| || || ||| || |||| | Sbjct: 595 gtgttgatgtgaatgtcgcttatgtggaaggtcgtgaagatcctgacaggggcgtgcagc 654 Query: 675 ctcagccactgactaaggattttctgatgatgtcttctggaaaacggaagagggatgaat 734 |||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||||||| | Sbjct: 655 ctcagccactgactcaggactttttgacgatgtcttctggaaaacgcaagagggatgagt 714 Query: 735 atcctggtcagcttccttctggttcatttgt 765 ||||||||||||| ||||||||||| ||||| Sbjct: 715 atcctggtcagctcccttctggttcttttgt 745 Score = 184 bits (93), Expect = 7e-43 Identities = 165/189 (87%) Strand = Plus / Plus Query: 79 aaccctaggcaccttcgccatcatggccagcggcaacgtgtccaccgtctacatctccgt 138 |||||||| | ||| |||| ||||||| ||| ||||||| |||||||||||||||||||| Sbjct: 65 aaccctagccgcctccgccgtcatggcgagcagcaacgtctccaccgtctacatctccgt 124 Query: 139 catcgacgacgttgtcgccaaggttcgtgaggacttcattacctacggcgttggcgatgc 198 |||||| ||||| || ||||||| || ||||| ||||| |||||||| || ||||| || Sbjct: 125 catcgatgacgtcatctccaaggtccgcgaggatttcatcacctacggagtcggcgacgc 184 Query: 199 cgtcctcaacgaactccaggctctctgggaaatgaagatgctgcactgtggcgcaatctc 258 |||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 185 cgtcctaaacgagctccaggctctctgggagatgaaaatgctgcactgtggcgcgatctc 244 Query: 259 agggaacat 267 |||||||| Sbjct: 245 ggggaacat 253 Score = 178 bits (90), Expect = 4e-41 Identities = 135/150 (90%) Strand = Plus / Plus Query: 1160 gaacctaacacgcagcaccttgtccttgcacaatttgacaaggtaacaaggacaaagaat 1219 ||||||||||| || || ||||| ||||||||||||||||| || || ||||| |||||| Sbjct: 1119 gaacctaacacacaacatcttgtacttgcacaatttgacaaagtgacgaggaccaagaat 1178 Query: 1220 cgctggaagtgcactttgaaggatggaatcatgcatttgaatggcagagatgttctattc 1279 || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1179 cgttggaagtgcactttgaaggatggaatcatgcatttgaatggtagggatgttctattt 1238 Query: 1280 aacaaggcttcaggagagtttgatttttga 1309 |||||||| |||| ||||||||||||||| Sbjct: 1239 aacaaggcgacaggtgagtttgatttttga 1268 Score = 119 bits (60), Expect = 3e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 926 gggatacaagatgactataacgatcaattcttcttcccaggagttccaaccgaagactac 985 ||||| ||||||||||| || |||||||| ||||| |||||||||||||| ||||| || Sbjct: 885 gggattcaagatgactacaatgatcaatttttctttccaggagttccaactgaagattat 944 Query: 986 aatacccctggggaatcttccgaatatcgaactccaacacctgctattgcaacaccaaag 1045 ||||||||||| |||||| | || |||||| |||| ||||||||| ||| ||||||||| Sbjct: 945 aatacccctggagaatctgctgagtatcgagctcctacacctgctgttggaacaccaaaa 1004 Query: 1046 ccaagaaa 1053 |||||||| Sbjct: 1005 ccaagaaa 1012
>gb|BT018530.1| Zea mays clone EL01N0434A06.d mRNA sequence Length = 1595 Score = 309 bits (156), Expect = 2e-80 Identities = 377/451 (83%) Strand = Plus / Plus Query: 315 ccggcgcgactccaccagtgcacgacctcaacgtgccctacgaggccacgtccgaggagt 374 ||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 315 ccggcacgacaccgccagtgcacgacctcaacgtgccgtacgaggccacatccgaggagt 374 Query: 375 acgccaccccaaccgccgacatgctgttcccaccgacgccgctgcagaccccgatccaga 434 |||||||||| ||||| |||||||||||||| ||||| || |||||||||| ||||||| Sbjct: 375 acgccaccccgaccgctgacatgctgttcccgccgacaccattgcagaccccaatccaga 434 Query: 435 caccacttccagggattgatacagggatgtataacatacccacagggccgtcggactatg 494 | || | ||||||| || ||||||||||| |||||||| || || || || || |||| Sbjct: 435 ctcctttgccagggacagacacagggatgtacaacatacctactggcccttccgattatg 494 Query: 495 ccccatcgcccatcagtgacatgagaaacgggatggggatgaatgggtctgatccaaaaa 554 ||||||| || ||||| || || || ||||||||| ||| |||||| | || |||||| Sbjct: 495 ccccatcaccgatcagcgatatcaggaacgggatgacgataaatggggcagacccaaaag 554 Query: 555 ctggccgcccaagcccttacatgcaacctccatcaccctggatgaatcagagaccactgg 614 ||||||| ||||| |||||||||| ||| || || || ||||||||||| || || |||| Sbjct: 555 ctggccgtccaagtccttacatgccaccaccttccccttggatgaatcanaggccgctgg 614 Query: 615 gggttgatgtgaatgttgcttatgaggagagccgtgaggacccagaccggttgatgcaac 674 | |||||||||||||| ||||||| ||| | ||||| || || ||| || |||| | Sbjct: 615 gtgttgatgtgaatgtcgcttatgtggaaggtcgtgaagatcctgacaggggcgtgcagc 674 Query: 675 ctcagccactgactaaggattttctgatgatgtcttctggaaaacggaagagggatgaat 734 |||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||||||| | Sbjct: 675 ctcagccactgactcaggactttttgacgatgtcttctggaaaacgcaagagggatgagt 734 Query: 735 atcctggtcagcttccttctggttcatttgt 765 |||||| || ||| ||||||||||| ||||| Sbjct: 735 atcctgctctgctcccttctggttcttttgt 765 Score = 184 bits (93), Expect = 7e-43 Identities = 165/189 (87%) Strand = Plus / Plus Query: 79 aaccctaggcaccttcgccatcatggccagcggcaacgtgtccaccgtctacatctccgt 138 |||||||| | ||| |||| ||||||| ||| ||||||| |||||||||||||||||||| Sbjct: 85 aaccctagccgcctccgccgtcatggcgagcagcaacgtctccaccgtctacatctccgt 144 Query: 139 catcgacgacgttgtcgccaaggttcgtgaggacttcattacctacggcgttggcgatgc 198 |||||| ||||| || ||||||| || ||||| ||||| |||||||| || ||||| || Sbjct: 145 catcgatgacgtcatctccaaggtccgcgaggatttcatcacctacggagtcggcgacgc 204 Query: 199 cgtcctcaacgaactccaggctctctgggaaatgaagatgctgcactgtggcgcaatctc 258 |||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 205 cgtcctaaacgagctccaggctctctgggagatgaaaatgctgcactgtggcgcgatctc 264 Query: 259 agggaacat 267 |||||||| Sbjct: 265 ggggaacat 273 Score = 178 bits (90), Expect = 4e-41 Identities = 135/150 (90%) Strand = Plus / Plus Query: 1160 gaacctaacacgcagcaccttgtccttgcacaatttgacaaggtaacaaggacaaagaat 1219 ||||||||||| || || ||||| ||||||||||||||||| || || ||||| |||||| Sbjct: 1139 gaacctaacacacaacatcttgtacttgcacaatttgacaaagtgacgaggaccaagaat 1198 Query: 1220 cgctggaagtgcactttgaaggatggaatcatgcatttgaatggcagagatgttctattc 1279 || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1199 cgttggaagtgcactttgaaggatggaatcatgcatttgaatggtagggatgttctattt 1258 Query: 1280 aacaaggcttcaggagagtttgatttttga 1309 |||||||| |||| ||||||||||||||| Sbjct: 1259 aacaaggcgacaggcgagtttgatttttga 1288 Score = 119 bits (60), Expect = 3e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 926 gggatacaagatgactataacgatcaattcttcttcccaggagttccaaccgaagactac 985 ||||| ||||||||||| || |||||||| ||||| |||||||||||||| ||||| || Sbjct: 905 gggattcaagatgactacaatgatcaatttttctttccaggagttccaactgaagattat 964 Query: 986 aatacccctggggaatcttccgaatatcgaactccaacacctgctattgcaacaccaaag 1045 ||||||||||| |||||| | || |||||| |||| ||||||||| ||| ||||||||| Sbjct: 965 aatacccctggagaatctgctgagtatcgagctcctacacctgctgttggaacaccaaaa 1024 Query: 1046 ccaagaaa 1053 |||||||| Sbjct: 1025 ccaagaaa 1032
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 133 bits (67), Expect = 2e-27 Identities = 82/87 (94%) Strand = Plus / Plus Query: 1200 aggtaacaaggacaaagaatcgctggaagtgcactttgaaggatggaatcatgcatttga 1259 |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 35360 aggtgacaaggacaaagaaccgctggaaatgcactttgaaggatggaatcatgcatttaa 35419 Query: 1260 atggcagagatgttctattcaacaagg 1286 ||||| ||||||||||||||||||||| Sbjct: 35420 atggccgagatgttctattcaacaagg 35446 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 690 aggattttctgatgatgtcttctggaaaacggaagagggatgaatatcctggtcagcttc 749 |||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| | Sbjct: 32241 aggattttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcc 32300 Query: 750 cttctggttcatttgtgccgcaacaggatggttgtgcaga 789 |||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 32301 cttctggttcttttgtgccacaacaagatggaagtgcaga 32340 Score = 105 bits (53), Expect = 5e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 409 gacgccgctgcagaccccgatccagacaccacttccagggattgatacagggatgtataa 468 ||||||||| || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct: 30678 gacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaa 30737 Query: 469 catacccacagggccgtcggactatgccccatcgcccatcagtgacatgagaaacgggat 528 ||| ||||| ||||| || ||||||||||| || || ||||||||| |||| || || || Sbjct: 30738 cattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcat 30797 Query: 529 ggggatgaatgggtctgatccaaaaactggccgcccaagcccttacatg 577 || |||||||| |||||||||| ||||| ||||| || || |||||| Sbjct: 30798 ggccatgaatggagctgatccaaagactggtcgcccgagtccctacatg 30846 Score = 103 bits (52), Expect = 2e-18 Identities = 103/120 (85%) Strand = Plus / Plus Query: 100 catggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaa 159 |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct: 30131 catggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaa 30190 Query: 160 ggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 219 ||| || || |||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 30191 ggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 30250 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 335 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 394 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 30476 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 30535 Query: 395 atgctgttccc 405 ||||||||||| Sbjct: 30536 atgctgttccc 30546 Score = 75.8 bits (38), Expect = 4e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 221 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 274 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 30362 ctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 30415 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1163 cctaacacgcagcaccttgtccttgcacaatttgacaa 1200 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 35229 cctaacacacagcaccttgtcctcgcacagtttgacaa 35266 Score = 50.1 bits (25), Expect = 0.025 Identities = 37/41 (90%) Strand = Plus / Plus Query: 590 ccctggatgaatcagagaccactgggggttgatgtgaatgt 630 |||||||||| |||||| || ||||| |||||||||||||| Sbjct: 30939 ccctggatgactcagaggccgctgggcgttgatgtgaatgt 30979 Score = 50.1 bits (25), Expect = 0.025 Identities = 40/45 (88%) Strand = Plus / Plus Query: 958 cttcccaggagttccaaccgaagactacaatacccctggggaatc 1002 ||||| |||||||||||| || || |||||||||||||| ||||| Sbjct: 34953 cttccaaggagttccaactgaggattacaatacccctggagaatc 34997 Score = 48.1 bits (24), Expect = 0.098 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1487 aaaaatggtacagttgggacggttgtggatattttcttgagatg 1530 ||||||| |||||||||||| ||||| || |||||| ||||||| Sbjct: 36251 aaaaatgctacagttgggactgttgtagacattttcctgagatg 36294 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 632 gcttatgaggagagccgtgaggacccaga 660 ||||||| ||||| ||||||||||||||| Sbjct: 31104 gcttatgtggagaaccgtgaggacccaga 31132
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 133 bits (67), Expect = 2e-27 Identities = 82/87 (94%) Strand = Plus / Plus Query: 1200 aggtaacaaggacaaagaatcgctggaagtgcactttgaaggatggaatcatgcatttga 1259 |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 108188 aggtgacaaggacaaagaaccgctggaaatgcactttgaaggatggaatcatgcatttaa 108247 Query: 1260 atggcagagatgttctattcaacaagg 1286 ||||| ||||||||||||||||||||| Sbjct: 108248 atggccgagatgttctattcaacaagg 108274 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 690 aggattttctgatgatgtcttctggaaaacggaagagggatgaatatcctggtcagcttc 749 |||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| | Sbjct: 105069 aggattttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcc 105128 Query: 750 cttctggttcatttgtgccgcaacaggatggttgtgcaga 789 |||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 105129 cttctggttcttttgtgccacaacaagatggaagtgcaga 105168 Score = 105 bits (53), Expect = 5e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 409 gacgccgctgcagaccccgatccagacaccacttccagggattgatacagggatgtataa 468 ||||||||| || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct: 103506 gacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaa 103565 Query: 469 catacccacagggccgtcggactatgccccatcgcccatcagtgacatgagaaacgggat 528 ||| ||||| ||||| || ||||||||||| || || ||||||||| |||| || || || Sbjct: 103566 cattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcat 103625 Query: 529 ggggatgaatgggtctgatccaaaaactggccgcccaagcccttacatg 577 || |||||||| |||||||||| ||||| ||||| || || |||||| Sbjct: 103626 ggccatgaatggagctgatccaaagactggtcgcccgagtccctacatg 103674 Score = 103 bits (52), Expect = 2e-18 Identities = 103/120 (85%) Strand = Plus / Plus Query: 100 catggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaa 159 |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct: 102959 catggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaa 103018 Query: 160 ggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 219 ||| || || |||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 103019 ggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 103078 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 335 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 394 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 103304 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 103363 Query: 395 atgctgttccc 405 ||||||||||| Sbjct: 103364 atgctgttccc 103374 Score = 75.8 bits (38), Expect = 4e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 221 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 274 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 103190 ctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 103243 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1163 cctaacacgcagcaccttgtccttgcacaatttgacaa 1200 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 108057 cctaacacacagcaccttgtcctcgcacagtttgacaa 108094 Score = 50.1 bits (25), Expect = 0.025 Identities = 37/41 (90%) Strand = Plus / Plus Query: 590 ccctggatgaatcagagaccactgggggttgatgtgaatgt 630 |||||||||| |||||| || ||||| |||||||||||||| Sbjct: 103767 ccctggatgactcagaggccgctgggcgttgatgtgaatgt 103807 Score = 50.1 bits (25), Expect = 0.025 Identities = 40/45 (88%) Strand = Plus / Plus Query: 958 cttcccaggagttccaaccgaagactacaatacccctggggaatc 1002 ||||| |||||||||||| || || |||||||||||||| ||||| Sbjct: 107781 cttccaaggagttccaactgaggattacaatacccctggagaatc 107825 Score = 48.1 bits (24), Expect = 0.098 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1487 aaaaatggtacagttgggacggttgtggatattttcttgagatg 1530 ||||||| |||||||||||| ||||| || |||||| ||||||| Sbjct: 109079 aaaaatgctacagttgggactgttgtagacattttcctgagatg 109122 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 632 gcttatgaggagagccgtgaggacccaga 660 ||||||| ||||| ||||||||||||||| Sbjct: 103932 gcttatgtggagaaccgtgaggacccaga 103960
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 133 bits (67), Expect = 2e-27 Identities = 82/87 (94%) Strand = Plus / Plus Query: 1200 aggtaacaaggacaaagaatcgctggaagtgcactttgaaggatggaatcatgcatttga 1259 |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 12737901 aggtgacaaggacaaagaaccgctggaaatgcactttgaaggatggaatcatgcatttaa 12737960 Query: 1260 atggcagagatgttctattcaacaagg 1286 ||||| ||||||||||||||||||||| Sbjct: 12737961 atggccgagatgttctattcaacaagg 12737987 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 690 aggattttctgatgatgtcttctggaaaacggaagagggatgaatatcctggtcagcttc 749 |||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| | Sbjct: 12734782 aggattttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcc 12734841 Query: 750 cttctggttcatttgtgccgcaacaggatggttgtgcaga 789 |||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 12734842 cttctggttcttttgtgccacaacaagatggaagtgcaga 12734881 Score = 105 bits (53), Expect = 5e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 409 gacgccgctgcagaccccgatccagacaccacttccagggattgatacagggatgtataa 468 ||||||||| || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct: 12733219 gacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaa 12733278 Query: 469 catacccacagggccgtcggactatgccccatcgcccatcagtgacatgagaaacgggat 528 ||| ||||| ||||| || ||||||||||| || || ||||||||| |||| || || || Sbjct: 12733279 cattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcat 12733338 Query: 529 ggggatgaatgggtctgatccaaaaactggccgcccaagcccttacatg 577 || |||||||| |||||||||| ||||| ||||| || || |||||| Sbjct: 12733339 ggccatgaatggagctgatccaaagactggtcgcccgagtccctacatg 12733387 Score = 103 bits (52), Expect = 2e-18 Identities = 103/120 (85%) Strand = Plus / Plus Query: 100 catggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaa 159 |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct: 12732672 catggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaa 12732731 Query: 160 ggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 219 ||| || || |||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 12732732 ggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 12732791 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 335 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 394 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 12733017 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 12733076 Query: 395 atgctgttccc 405 ||||||||||| Sbjct: 12733077 atgctgttccc 12733087 Score = 75.8 bits (38), Expect = 4e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 221 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 274 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 12732903 ctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 12732956 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1163 cctaacacgcagcaccttgtccttgcacaatttgacaa 1200 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 12737770 cctaacacacagcaccttgtcctcgcacagtttgacaa 12737807 Score = 50.1 bits (25), Expect = 0.025 Identities = 37/41 (90%) Strand = Plus / Plus Query: 590 ccctggatgaatcagagaccactgggggttgatgtgaatgt 630 |||||||||| |||||| || ||||| |||||||||||||| Sbjct: 12733480 ccctggatgactcagaggccgctgggcgttgatgtgaatgt 12733520 Score = 50.1 bits (25), Expect = 0.025 Identities = 40/45 (88%) Strand = Plus / Plus Query: 958 cttcccaggagttccaaccgaagactacaatacccctggggaatc 1002 ||||| |||||||||||| || || |||||||||||||| ||||| Sbjct: 12737494 cttccaaggagttccaactgaggattacaatacccctggagaatc 12737538 Score = 48.1 bits (24), Expect = 0.098 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1487 aaaaatggtacagttgggacggttgtggatattttcttgagatg 1530 ||||||| |||||||||||| ||||| || |||||| ||||||| Sbjct: 12738792 aaaaatgctacagttgggactgttgtagacattttcctgagatg 12738835 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 632 gcttatgaggagagccgtgaggacccaga 660 ||||||| ||||| ||||||||||||||| Sbjct: 12733645 gcttatgtggagaaccgtgaggacccaga 12733673
>emb|AJ293478.1|SHY293478 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR5 Length = 456 Score = 101 bits (51), Expect = 8e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 94 cgccatcatggccagcggcaacgtgtccaccgtctacatctccgtcatcgacgacgttgt 153 |||| ||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||| | Sbjct: 360 cgccgtcatggcgagcagcaacgtctccaccgtctacatctctgtcattgatgacgtcat 301 Query: 154 cgccaaggttcgtgaggacttcattacctacggcgttggcgatgccgtcctcaacgaact 213 | ||||||| || ||||| ||||| |||||||| || ||||| |||||||| ||||| || Sbjct: 300 ctccaaggtccgcgaggatttcatcacctacggagtcggcgacgccgtcctaaacgagct 241 Query: 214 ccaggct 220 ||||||| Sbjct: 240 ccaggct 234 Score = 65.9 bits (33), Expect = 4e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 221 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccg 273 |||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||| Sbjct: 127 ctctgggagatgaaaatgctgcactgtggcgcgatctcggggaacatagaccg 75 Score = 42.1 bits (21), Expect = 6.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 315 ccggcgcgactccaccagtgcacgacctcaacgtgcc 351 ||||| |||| || || |||||||||||||||||||| Sbjct: 39 ccggcacgacaccgcccgtgcacgacctcaacgtgcc 3
>ref|XM_001210776.1| Aspergillus terreus NIH2624 predicted protein (ATEG_00690) mRNA, complete cds Length = 1326 Score = 52.0 bits (26), Expect = 0.006 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1223 tggaagtgcactttgaaggatggaat 1248 |||||||||||||||||||||||||| Sbjct: 1240 tggaagtgcactttgaaggatggaat 1265
>ref|NM_001066555.1| Oryza sativa (japonica cultivar-group) Os07g0567300 (Os07g0567300) mRNA, complete cds Length = 1818 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 7 cctcctcctccccgtttcccctctcc 32 |||||||||||||||| ||||||||| Sbjct: 131 cctcctcctccccgttccccctctcc 156
>emb|AM384988.2| Nidula niveotomentosa partial mRNA for putative heat shock protein 1 (hsp1 gene) Length = 330 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 ggaggtgctcctggtgccggcg 320 |||||||||||||||||||||| Sbjct: 250 ggaggtgctcctggtgccggcg 271
>ref|XM_653328.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0816.2), mRNA Length = 1260 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1223 tggaagtgcactttgaaggatggaat 1248 ||||| |||||||||||||||||||| Sbjct: 1174 tggaaatgcactttgaaggatggaat 1199
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 7 cctcctcctccccgtttcccctctcc 32 |||||||||||||||| ||||||||| Sbjct: 22744636 cctcctcctccccgttccccctctcc 22744611
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 7 cctcctcctccccgtttcccctctcc 32 |||||||||||||||| ||||||||| Sbjct: 63978 cctcctcctccccgttccccctctcc 63953
>gb|AY251269.2| Varroa destructor virus 1, complete genome Length = 10112 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 795 ttgccgaatttgtggggtcaaaggat 820 |||||||||||||| ||||||||||| Sbjct: 1941 ttgccgaatttgtgtggtcaaaggat 1966
>emb|CU179894.1| Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE Length = 208413 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1250 atgcatttgaatggcagagat 1270 ||||||||||||||||||||| Sbjct: 74652 atgcatttgaatggcagagat 74632
>emb|CT841554.8| Pig DNA sequence from clone CH242-267N7 on chromosome 7, complete sequence Length = 248471 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 835 gtggaattccatcttgaacaa 855 ||||||||||||||||||||| Sbjct: 157089 gtggaattccatcttgaacaa 157069
>ref|XR_026056.1| PREDICTED: Strongylocentrotus purpuratus similar to GA binding protein transcription factor, beta subunit 2 (LOC583982), mRNA Length = 8702 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 5668 ctattcaacaaggcttcagga 5688 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 8215 ctattcaacaaggcttcagga 8235
>ref|XM_785963.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC586171 (LOC586171), partial mRNA Length = 6359 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 835 ctattcaacaaggcttcagga 855 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 3379 ctattcaacaaggcttcagga 3399 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 5830 ctattcaacaaggcttcagga 5850
>ref|XR_025951.1| PREDICTED: Strongylocentrotus purpuratus similar to GA binding protein transcription factor, beta subunit 2 (LOC583982), mRNA Length = 8702 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 5668 ctattcaacaaggcttcagga 5688 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 8215 ctattcaacaaggcttcagga 8235
>ref|XM_001198877.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC586171 (LOC586171), partial mRNA Length = 6359 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 835 ctattcaacaaggcttcagga 855 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 3379 ctattcaacaaggcttcagga 3399 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1274 ctattcaacaaggcttcagga 1294 ||||||||||||||||||||| Sbjct: 5830 ctattcaacaaggcttcagga 5850
>ref|NM_001064310.1| Oryza sativa (japonica cultivar-group) Os06g0529800 (Os06g0529800) mRNA, complete cds Length = 1678 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 caaaccctaaccctaggcacc 91 ||||||||||||||||||||| Sbjct: 99 caaaccctaaccctaggcacc 119
>ref|NM_001051184.1| Oryza sativa (japonica cultivar-group) Os01g0821700 (Os01g0821700) mRNA, partial cds Length = 1530 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 catcaccctggatgaatcaga 605 ||||||||||||||||||||| Sbjct: 1157 catcaccctggatgaatcaga 1177
>gb|AC140201.3| Mus musculus BAC clone RP23-267F15 from chromosome 16, complete sequence Length = 166079 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1237 gaaggatggaatcatgcattt 1257 ||||||||||||||||||||| Sbjct: 105725 gaaggatggaatcatgcattt 105705
>gb|AC124366.4| Mus musculus BAC clone RP24-541E9 from chromosome 1, complete sequence Length = 166555 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 742 tcagcttccttctggttcatt 762 ||||||||||||||||||||| Sbjct: 39213 tcagcttccttctggttcatt 39233
>gb|AC073079.10| Homo sapiens BAC clone RP11-282G13 from 7, complete sequence Length = 25183 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1338 gcctgctgtatctactgtctttaac 1362 |||||||| |||||||||||||||| Sbjct: 23275 gcctgctgaatctactgtctttaac 23299
>gb|AC006357.5| Homo sapiens PAC clone RP5-1121A15 from 7, complete sequence Length = 130492 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 aatgaagatgctgcactgtgg 249 ||||||||||||||||||||| Sbjct: 75992 aatgaagatgctgcactgtgg 76012
>gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosome 12, complete sequence Length = 226841 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1175 caccttgtccttgcacaattt 1195 ||||||||||||||||||||| Sbjct: 96005 caccttgtccttgcacaattt 95985
>gb|AC079817.41| Mus musculus strain C57BL/6J clone rp23-247i11 map 16, complete sequence Length = 197346 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1237 gaaggatggaatcatgcattt 1257 ||||||||||||||||||||| Sbjct: 172010 gaaggatggaatcatgcattt 171990
>gb|AY126484.1| Moira clotho bindin precursor, mRNA, partial cds Length = 1403 Score = 42.1 bits (21), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 168 aggacttcattacctacggcgttggcg 194 ||||||||||| | ||||||||||||| Sbjct: 1151 aggacttcattrcgtacggcgttggcg 1125
>gb|AC157503.3| Medicago truncatula chromosome 2 BAC clone mte1-58k20, complete sequence Length = 115769 Score = 42.1 bits (21), Expect = 6.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 1223 tggaagtgcactttgaaggatggaatcatgcat 1255 ||||||||||| || |||||||| ||||||||| Sbjct: 84584 tggaagtgcacattaaaggatggcatcatgcat 84552
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 caaaccctaaccctaggcacc 91 ||||||||||||||||||||| Sbjct: 19315505 caaaccctaaccctaggcacc 19315525
>gb|AC099652.2| Homo sapiens BAC clone RP11-750J7 from 7, complete sequence Length = 152754 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1338 gcctgctgtatctactgtctttaac 1362 |||||||| |||||||||||||||| Sbjct: 92 gcctgctgaatctactgtctttaac 116
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 catcaccctggatgaatcaga 605 ||||||||||||||||||||| Sbjct: 35058077 catcaccctggatgaatcaga 35058057
>emb|AL031681.16|HS862K6 Human DNA sequence from clone RP5-862K6 on chromosome 20q12-13.13 Contains the 5' end of the L3MBTL gene for l(3)mbt-like (Drosophila), the SFRS6 gene for arginine/serine-rich splicing factor 6, the EIF4EBP2P gene for eukaryotic translation initiation factor 4E binding protein 2 pseudogene, a pseudogene similar to part of nucleotide binding protein (NBP) and two CpG islands, complete sequence Length = 169649 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1357 tttaacataaggaagggaagg 1377 ||||||||||||||||||||| Sbjct: 121051 tttaacataaggaagggaagg 121071
>gb|AC153556.5| Mus musculus 10 BAC RP23-395M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184751 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 cccgagctgcagcccgcctcgccgtcgct 60 ||||||||||||||||||| |||| |||| Sbjct: 73748 cccgagctgcagcccgcctggccgccgct 73720
>dbj|AP007208.1| Mus musculus molossinus genomic DNA, chromosome 1 clone:MSMg01-275M02, complete sequence Length = 165943 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 742 tcagcttccttctggttcatt 762 ||||||||||||||||||||| Sbjct: 786 tcagcttccttctggttcatt 766
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485B12 Length = 156047 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 catcaccctggatgaatcaga 605 ||||||||||||||||||||| Sbjct: 65227 catcaccctggatgaatcaga 65207
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0703B11 Length = 144074 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 catcaccctggatgaatcaga 605 ||||||||||||||||||||| Sbjct: 102305 catcaccctggatgaatcaga 102285
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 caaaccctaaccctaggcacc 91 ||||||||||||||||||||| Sbjct: 20278 caaaccctaaccctaggcacc 20298
>gb|AY206695.1| Homo sapiens transient receptor potential cation channel, subfamily V, member 5 (TRPV5) gene, complete cds Length = 29923 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1338 gcctgctgtatctactgtctttaac 1362 |||||||| |||||||||||||||| Sbjct: 4867 gcctgctgaatctactgtctttaac 4843
>dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115A04, full insert sequence Length = 1679 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 caaaccctaaccctaggcacc 91 ||||||||||||||||||||| Sbjct: 100 caaaccctaaccctaggcacc 120
>dbj|AK060539.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E03, full insert sequence Length = 1530 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 catcaccctggatgaatcaga 605 ||||||||||||||||||||| Sbjct: 1157 catcaccctggatgaatcaga 1177
>gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complete sequence Length = 186518 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1246 aatcatgcatttgaatggcagagat 1270 ||||| ||||||||||||||||||| Sbjct: 153312 aatcaagcatttgaatggcagagat 153336
>emb|X16389.1|MMCMYBE1 Mouse c-myb oncogene exon 1 Length = 1861 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 cccgagctgcagcccgcctcgccgtcgct 60 ||||||||||||||||||| |||| |||| Sbjct: 880 cccgagctgcagcccgcctggccgccgct 852
>gb|M20210.1|MUSMYBH Mouse myb cellular proto oncogene, exon 1 Length = 910 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 cccgagctgcagcccgcctcgccgtcgct 60 ||||||||||||||||||| |||| |||| Sbjct: 557 cccgagctgcagcccgcctggccgccgct 529
>gb|M21169.1|MUSMYBG Mouse myb proto-oncogene, exon 1 Length = 1136 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 cccgagctgcagcccgcctcgccgtcgct 60 ||||||||||||||||||| |||| |||| Sbjct: 737 cccgagctgcagcccgcctggccgccgct 709 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 256,387,915 Number of extensions: 14409900 Number of successful extensions: 290383 Number of sequences better than 10.0: 48 Number of HSP's gapped: 290379 Number of HSP's successfully gapped: 109 Length of query: 1581 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1558 Effective length of database: 18,503,978,556 Effective search space: 28829198590248 Effective search space used: 28829198590248 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
